Wall clock time and date at job start Wed Apr 1 2020 03:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47497 * 2 1 4 4 C 1.35653 * 117.00463 * 180.02562 * 3 2 1 5 5 C 1.38717 * 120.14573 * 0.02562 * 4 3 2 6 6 C 1.38051 * 120.07811 * 179.97438 * 5 4 3 7 7 C 1.38549 * 120.39828 * 0.02562 * 6 5 4 8 8 C 1.37792 * 120.29488 * 359.67481 * 7 6 5 9 9 C 1.39711 * 119.90814 * 0.60047 * 8 7 6 10 10 C 1.47537 * 120.19319 * 179.69491 * 9 8 7 11 11 O 1.21581 * 120.00154 * 179.72746 * 10 9 8 12 12 N 1.34778 * 119.99403 * 359.73035 * 10 9 8 13 13 C 1.46505 * 119.99520 * 179.97438 * 12 10 9 14 14 C 1.53154 * 109.43294 * 119.95861 * 13 12 10 15 15 C 1.53695 * 108.87244 * 66.17738 * 14 13 12 16 16 H 1.09002 * 112.09766 * 188.24913 * 15 14 13 17 17 C 1.54602 * 107.83434 * 312.22525 * 15 14 13 18 18 C 1.54308 * 104.75310 * 88.67307 * 17 15 14 19 19 C 1.54616 * 104.75039 * 359.97438 * 18 17 15 20 20 H 1.08990 * 112.19236 * 146.79834 * 19 18 17 21 21 C 1.53142 * 109.43567 * 240.18241 * 13 12 10 22 22 N 1.48293 * 104.25894 * 25.14100 * 19 18 17 23 23 C 1.36935 * 128.21084 * 138.42751 * 22 19 18 24 24 H 1.08002 * 119.99940 * 195.29809 * 23 22 19 25 25 C 1.38811 * 120.00161 * 15.29970 * 23 22 19 26 26 N 1.31621 * 119.99450 * 9.24587 * 25 23 22 27 27 Si 1.86790 * 120.00095 * 189.24840 * 25 23 22 28 28 H 1.48504 * 109.47462 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47620 * 120.00020 * 27 25 23 30 30 H 1.48507 * 109.47076 * 239.99904 * 27 25 23 31 31 H 1.09003 * 109.47120 * 300.00333 * 1 2 3 32 32 H 1.08997 * 109.47004 * 59.99694 * 1 2 3 33 33 H 1.09000 * 109.47407 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47120 * 239.99667 * 2 1 3 35 35 H 1.09005 * 109.47359 * 120.00370 * 2 1 3 36 36 H 1.07993 * 119.95699 * 359.96103 * 5 4 3 37 37 H 1.08012 * 119.79983 * 180.02562 * 6 5 4 38 38 H 1.07994 * 119.85652 * 179.97438 * 7 6 5 39 39 H 1.07996 * 120.04845 * 180.32141 * 8 7 6 40 40 H 0.96998 * 120.00366 * 359.97438 * 12 10 9 41 41 H 1.08998 * 109.39913 * 0.07181 * 13 12 10 42 42 H 1.09005 * 109.56625 * 185.99347 * 14 13 12 43 43 H 1.09001 * 109.57122 * 306.35700 * 14 13 12 44 44 H 1.08999 * 110.38296 * 207.49018 * 17 15 14 45 45 H 1.08997 * 110.38622 * 329.73817 * 17 15 14 46 46 H 1.09000 * 110.38946 * 118.81215 * 18 17 15 47 47 H 1.08998 * 110.38258 * 241.18363 * 18 17 15 48 48 H 1.08997 * 109.56990 * 53.64522 * 21 13 12 49 49 H 1.08997 * 109.57331 * 174.00627 * 21 13 12 50 50 H 0.97005 * 119.99501 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3512 1.5250 -0.0005 5 6 4.1990 0.4271 -0.0016 6 6 5.5674 0.6096 -0.0027 7 6 6.1043 1.8868 -0.0022 8 6 5.2769 2.9886 -0.0074 9 6 3.8902 2.8185 -0.0004 10 6 2.9985 3.9939 0.0009 11 8 1.7922 3.8418 0.0019 12 7 3.5212 5.2362 0.0009 13 6 2.6357 6.4034 0.0016 14 6 2.9030 7.2449 1.2530 15 6 4.3203 7.8326 1.1635 16 1 4.6205 8.3222 2.0899 17 6 5.2830 6.6890 0.7690 18 6 5.2808 6.6882 -0.7741 19 6 4.3163 7.8311 -1.1670 20 1 4.6194 8.3268 -2.0891 21 6 2.8991 7.2436 -1.2513 22 7 4.3436 8.7486 -0.0023 23 6 4.3808 10.1174 -0.0030 24 1 4.6440 10.6509 0.8984 25 6 4.0803 10.8193 -1.1623 26 7 3.5854 10.1866 -2.2049 27 14 4.3783 12.6615 -1.2425 28 1 4.9358 13.1297 0.0519 29 1 5.3406 12.9604 -2.3333 30 1 3.0950 13.3594 -1.5096 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.7881 -0.5716 -0.0014 37 1 6.2234 -0.2485 -0.0039 38 1 7.1761 2.0194 -0.0026 39 1 5.6997 3.9824 -0.0122 40 1 4.4835 5.3575 0.0004 41 1 1.5978 6.0704 0.0034 42 1 2.1751 8.0543 1.3109 43 1 2.8237 6.6161 2.1397 44 1 6.2855 6.8893 1.1470 45 1 4.9174 5.7360 1.1513 46 1 6.2821 6.8882 -1.1554 47 1 4.9129 5.7346 -1.1527 48 1 2.8172 6.6139 -2.1372 49 1 2.1712 8.0529 -1.3080 50 1 3.3757 10.6770 -3.0152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021451030.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:43 Heat of formation + Delta-G solvation = 40.134682 kcal Electronic energy + Delta-G solvation = -31775.306016 eV Core-core repulsion = 27770.936996 eV Total energy + Delta-G solvation = -4004.369020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.69018 -41.18475 -39.38352 -38.32181 -35.83620 -33.96197 -33.27973 -32.80369 -32.02989 -31.63610 -30.73047 -30.37197 -26.61685 -25.14674 -24.89235 -24.69662 -22.91347 -22.59273 -21.57971 -21.21718 -20.97334 -19.53674 -18.78472 -18.23530 -17.09400 -17.07810 -16.79344 -16.39826 -16.03418 -15.76434 -15.66559 -15.57763 -14.84170 -14.60762 -14.57702 -14.44643 -14.29050 -14.26506 -13.78640 -13.72424 -13.39089 -13.31646 -13.24266 -12.90483 -12.86333 -12.79241 -12.63872 -12.52755 -12.41994 -12.01461 -11.95379 -11.93879 -11.77260 -11.65136 -11.42363 -11.18584 -11.04028 -10.69907 -10.55753 -10.07256 -9.62733 -9.17803 -8.75353 -7.81827 -5.17068 -0.09948 0.43425 1.48108 1.49658 1.58859 1.97489 2.25783 2.36466 2.52030 2.89558 3.35693 3.52389 3.74220 3.77870 3.90836 3.94276 4.01197 4.04596 4.14908 4.20489 4.23102 4.25557 4.29256 4.36587 4.40917 4.41519 4.48333 4.51126 4.67378 4.77219 4.84080 4.86694 4.91295 4.93334 4.99057 5.05694 5.09641 5.16396 5.25132 5.25350 5.27598 5.35866 5.41830 5.48908 5.56730 5.58352 5.78720 5.80567 5.83051 6.27710 6.46601 6.68223 7.10605 7.36197 7.77144 8.57336 9.29327 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020364 B = 0.002939 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.664086 B = 9525.414604 C =10270.415082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.040 3.960 3 O -0.315 6.315 4 C 0.162 3.838 5 C -0.221 4.221 6 C -0.044 4.044 7 C -0.162 4.162 8 C -0.058 4.058 9 C -0.202 4.202 10 C 0.535 3.465 11 O -0.577 6.577 12 N -0.725 5.725 13 C 0.154 3.846 14 C -0.131 4.131 15 C 0.142 3.858 16 H 0.078 0.922 17 C -0.151 4.151 18 C -0.165 4.165 19 C 0.178 3.822 20 H 0.073 0.927 21 C -0.113 4.113 22 N -0.602 5.602 23 C -0.230 4.230 24 H 0.078 0.922 25 C -0.059 4.059 26 N -0.936 5.936 27 Si 0.970 3.030 28 H -0.268 1.268 29 H -0.294 1.294 30 H -0.299 1.299 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.163 0.837 39 H 0.137 0.863 40 H 0.433 0.567 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.040 0.960 49 H 0.044 0.956 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.980 -24.344 5.701 25.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 O -0.228 6.228 4 C 0.114 3.886 5 C -0.239 4.239 6 C -0.062 4.062 7 C -0.179 4.179 8 C -0.076 4.076 9 C -0.205 4.205 10 C 0.325 3.675 11 O -0.459 6.459 12 N -0.399 5.399 13 C 0.049 3.951 14 C -0.171 4.171 15 C 0.035 3.965 16 H 0.096 0.904 17 C -0.190 4.190 18 C -0.205 4.205 19 C 0.071 3.929 20 H 0.091 0.909 21 C -0.153 4.153 22 N -0.323 5.323 23 C -0.359 4.359 24 H 0.096 0.904 25 C -0.253 4.253 26 N -0.584 5.584 27 Si 0.800 3.200 28 H -0.192 1.192 29 H -0.221 1.221 30 H -0.227 1.227 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.176 0.824 37 H 0.186 0.814 38 H 0.180 0.820 39 H 0.155 0.845 40 H 0.295 0.705 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.116 0.884 46 H 0.092 0.908 47 H 0.109 0.891 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.012 -24.041 5.589 25.186 hybrid contribution -0.358 1.510 -0.527 1.639 sum 4.654 -22.531 5.061 23.557 Atomic orbital electron populations 1.21780 0.92477 1.03945 1.02436 1.23163 0.96606 0.80965 1.02739 1.86369 1.18719 1.30883 1.86821 1.19357 0.83414 0.93322 0.92474 1.21564 0.94801 0.97965 1.09578 1.21616 0.94047 0.98607 0.91964 1.21404 1.01507 0.91578 1.03448 1.21424 0.90297 1.01075 0.94834 1.19465 0.94500 0.90880 1.15701 1.18860 0.87990 0.84610 0.76084 1.90723 1.16600 1.86893 1.51654 1.48769 1.13234 1.04260 1.73610 1.20732 0.93984 0.84830 0.95579 1.22420 0.99895 0.98347 0.96443 1.21752 0.92564 0.90403 0.91731 0.90426 1.23213 1.01205 0.99430 0.95166 1.23348 1.01096 0.99760 0.96248 1.21336 0.91089 0.87974 0.92462 0.90909 1.22165 1.00842 0.97174 0.95153 1.45354 1.85100 1.00575 1.01291 1.19337 1.38128 0.81194 0.97242 0.90409 1.25551 1.00981 1.01471 0.97277 1.70077 1.48802 1.35285 1.04222 0.85134 0.76536 0.80827 0.77511 1.19227 1.22109 1.22689 0.92875 0.93047 0.87359 0.90367 0.90174 0.82427 0.81423 0.81982 0.84498 0.70507 0.91747 0.93106 0.91186 0.89533 0.88393 0.90780 0.89123 0.94168 0.93698 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 10.28 71.98 0.74 -1.85 16 2 C 0.04 0.72 5.46 71.98 0.39 1.12 16 3 O -0.32 -9.37 8.21 -68.76 -0.56 -9.93 16 4 C 0.16 4.33 6.70 22.85 0.15 4.48 16 5 C -0.22 -3.80 9.03 22.34 0.20 -3.60 16 6 C -0.04 -0.57 10.03 22.30 0.22 -0.35 16 7 C -0.16 -2.38 10.02 22.24 0.22 -2.16 16 8 C -0.06 -1.23 9.54 22.52 0.21 -1.02 16 9 C -0.20 -5.88 5.89 -20.01 -0.12 -6.00 16 10 C 0.54 19.73 7.76 86.70 0.67 20.40 16 11 O -0.58 -25.87 14.48 16.95 0.25 -25.63 16 12 N -0.72 -25.03 2.73 -445.23 -1.21 -26.25 16 13 C 0.15 6.24 3.15 45.09 0.14 6.38 16 14 C -0.13 -5.07 5.49 30.88 0.17 -4.90 16 15 C 0.14 5.51 4.32 45.43 0.20 5.71 16 16 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 17 C -0.15 -4.63 5.69 31.58 0.18 -4.45 16 18 C -0.17 -5.66 5.69 31.59 0.18 -5.48 16 19 C 0.18 8.18 3.13 45.41 0.14 8.33 16 20 H 0.07 3.91 6.36 -2.39 -0.02 3.90 16 21 C -0.11 -5.18 5.40 30.86 0.17 -5.01 16 22 N -0.60 -29.02 2.82 -637.39 -1.80 -30.81 16 23 C -0.23 -12.37 10.38 84.03 0.87 -11.49 16 24 H 0.08 4.05 7.85 -2.91 -0.02 4.03 16 25 C -0.06 -3.24 5.42 84.86 0.46 -2.78 16 26 N -0.94 -54.48 10.59 21.65 0.23 -54.25 16 27 Si 0.97 45.18 29.56 68.60 2.03 47.21 16 28 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 29 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 30 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.10 7.66 -2.39 -0.02 1.08 16 35 H 0.08 1.10 7.66 -2.38 -0.02 1.08 16 36 H 0.16 1.77 6.30 -2.91 -0.02 1.75 16 37 H 0.17 0.85 8.06 -2.90 -0.02 0.82 16 38 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.14 2.62 5.81 -2.91 -0.02 2.60 16 40 H 0.43 12.90 0.15 -115.82 -0.02 12.88 16 41 H 0.06 2.87 6.89 -2.39 -0.02 2.85 16 42 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.10 2.67 5.02 -2.39 -0.01 2.66 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.09 2.87 4.99 -2.39 -0.01 2.86 16 48 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.04 2.39 7.99 -2.39 -0.02 2.37 16 50 H 0.24 14.04 8.31 -92.70 -0.77 13.27 16 Total: -1.00 -74.57 377.47 5.08 -69.49 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.94 Total: 32.85 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.21 Total: -2.68 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -2.78 Total: -111.31 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.32 Total: -35.56 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.57 5.08 -69.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021451030.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.624 kcal (2) G-P(sol) polarization free energy of solvation -74.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds