Wall clock time and date at job start Wed Apr 1 2020 03:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47320 * 2 1 4 4 C 1.35647 * 116.99779 * 179.97438 * 3 2 1 5 5 C 1.38705 * 120.15548 * 359.97298 * 4 3 2 6 6 C 1.38062 * 120.08445 * 180.02562 * 5 4 3 7 7 C 1.38536 * 120.39300 * 359.97438 * 6 5 4 8 8 C 1.37794 * 120.29830 * 359.78403 * 7 6 5 9 9 C 1.39704 * 119.91143 * 0.46891 * 8 7 6 10 10 C 1.47534 * 120.19743 * 179.78543 * 9 8 7 11 11 O 1.21584 * 120.00236 * 222.56714 * 10 9 8 12 12 N 1.34783 * 119.99349 * 42.57355 * 10 9 8 13 13 C 1.49215 * 126.06191 * 355.11154 * 12 10 9 14 14 C 1.50344 * 104.85834 * 172.97576 * 13 12 10 15 15 H 1.09000 * 110.05217 * 278.93848 * 14 13 12 16 16 C 1.51005 * 125.54684 * 144.31714 * 14 13 12 17 17 C 1.56689 * 101.58560 * 203.89747 * 16 14 13 18 18 C 1.55945 * 105.64841 * 25.13980 * 17 16 14 19 19 H 1.09000 * 110.49482 * 248.68285 * 18 17 16 20 20 N 1.46509 * 110.49263 * 126.15710 * 18 17 16 21 21 C 1.36928 * 120.00134 * 88.26230 * 20 18 17 22 22 H 1.07998 * 119.99977 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00162 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00201 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99839 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47389 * 270.00157 * 25 23 21 27 27 H 1.48503 * 109.47408 * 30.00057 * 25 23 21 28 28 H 1.48502 * 109.47487 * 150.00120 * 25 23 21 29 29 C 1.50296 * 104.27482 * 7.42022 * 18 17 16 30 30 H 1.09000 * 109.99377 * 79.65803 * 29 18 17 31 31 C 1.49693 * 126.05273 * 175.15915 * 12 10 9 32 32 H 1.08995 * 109.47543 * 300.00263 * 1 2 3 33 33 H 1.09008 * 109.46790 * 60.00389 * 1 2 3 34 34 H 1.09002 * 109.47035 * 179.97438 * 1 2 3 35 35 H 1.09005 * 109.47481 * 239.99558 * 2 1 3 36 36 H 1.09007 * 109.46923 * 120.00147 * 2 1 3 37 37 H 1.08001 * 119.95709 * 0.05053 * 5 4 3 38 38 H 1.08001 * 119.79765 * 180.02562 * 6 5 4 39 39 H 1.07999 * 119.85031 * 180.02562 * 7 6 5 40 40 H 1.08002 * 120.04403 * 180.25777 * 8 7 6 41 41 H 1.09005 * 110.35728 * 291.82168 * 13 12 10 42 42 H 1.08994 * 110.35633 * 54.01863 * 13 12 10 43 43 H 1.08996 * 111.00507 * 322.05773 * 16 14 13 44 44 H 1.08994 * 111.00538 * 85.90916 * 16 14 13 45 45 H 1.08996 * 110.30001 * 266.08548 * 17 16 14 46 46 H 1.09001 * 110.20636 * 144.14958 * 17 16 14 47 47 H 0.97001 * 119.99662 * 268.25990 * 20 18 17 48 48 H 0.97000 * 120.00007 * 180.02562 * 24 23 21 49 49 H 1.08999 * 110.84873 * 36.63559 * 31 12 10 50 50 H 1.08994 * 110.84703 * 273.01767 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5249 0.0005 5 6 4.1990 0.4272 0.0016 6 6 5.5675 0.6096 0.0027 7 6 6.1043 1.8868 0.0022 8 6 5.2768 2.9886 -0.0039 9 6 3.8902 2.8186 0.0003 10 6 2.9984 3.9939 -0.0014 11 8 2.0151 4.0120 0.7134 12 7 3.2739 5.0475 -0.7955 13 6 4.4896 5.2133 -1.6447 14 6 4.2293 6.4542 -2.4526 15 1 3.5940 6.2180 -3.3063 16 6 5.2683 7.4727 -2.8568 17 6 4.3881 8.7502 -3.0761 18 6 3.1211 8.5452 -2.1905 19 1 2.2397 8.3955 -2.8141 20 7 2.9279 9.6912 -1.2984 21 6 2.2036 10.7736 -1.7212 22 1 1.7751 10.7827 -2.7125 23 6 2.0202 11.8592 -0.8758 24 7 1.3244 12.8998 -1.2824 25 14 2.7608 11.8431 0.8390 26 1 1.7880 11.2523 1.7929 27 1 4.0042 11.0311 0.8337 28 1 3.0791 13.2330 1.2539 29 6 3.4207 7.3048 -1.3964 30 1 4.0736 7.5476 -0.5581 31 6 2.4149 6.2593 -0.9810 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.7881 -0.5716 0.0012 38 1 6.2233 -0.2484 0.0031 39 1 7.1761 2.0194 0.0026 40 1 5.6998 3.9824 -0.0085 41 1 5.3732 5.3456 -1.0202 42 1 4.6147 4.3514 -2.3000 43 1 5.9937 7.6288 -2.0584 44 1 5.7648 7.1785 -3.7814 45 1 4.1038 8.8381 -4.1247 46 1 4.9302 9.6403 -2.7568 47 1 3.3131 9.6831 -0.4082 48 1 1.1966 13.6585 -0.6918 49 1 1.9299 6.5379 -0.0454 50 1 1.6781 6.0958 -1.7674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026409781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:19 Heat of formation + Delta-G solvation = -8.462314 kcal Electronic energy + Delta-G solvation = -30419.647289 eV Core-core repulsion = 26413.170945 eV Total energy + Delta-G solvation = -4006.476344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98121 -40.17498 -38.43605 -37.59806 -35.39907 -33.44323 -32.35911 -31.70598 -31.16511 -29.95878 -29.28013 -28.69532 -25.70693 -24.64291 -24.09407 -22.83321 -22.25275 -21.93741 -20.32314 -19.86307 -19.22746 -18.29605 -17.63165 -17.11331 -16.57741 -16.43904 -16.07548 -15.47191 -15.12047 -14.98003 -14.65637 -14.39022 -14.19889 -13.82820 -13.72249 -13.57353 -13.37033 -12.93832 -12.91468 -12.64796 -12.53054 -12.32378 -12.18785 -12.05261 -11.93263 -11.79107 -11.55180 -11.30434 -11.13330 -11.07762 -10.83548 -10.79525 -10.46877 -10.37406 -10.02803 -9.90764 -9.69505 -9.55497 -9.34374 -8.92602 -8.65304 -8.49526 -7.27029 -5.76498 -3.12294 0.69001 1.06972 2.73397 2.84181 2.87870 3.38866 3.42597 3.47389 3.49903 4.03114 4.33215 4.42449 4.55622 4.57211 4.60109 4.69236 4.77518 4.82081 4.88722 4.96166 5.03374 5.08413 5.19503 5.27965 5.35254 5.40497 5.46662 5.48201 5.51118 5.53787 5.63776 5.72482 5.74595 5.80155 5.86578 5.92127 5.93844 5.99220 6.06281 6.09622 6.17639 6.19180 6.28595 6.36469 6.37866 6.54926 6.71236 6.95080 7.07771 7.53443 7.99604 8.22361 8.42799 9.20669 9.93390 10.12645 11.41777 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.002642 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.405774 B =10595.881002 C =11369.187833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.293 6.293 4 C 0.179 3.821 5 C -0.219 4.219 6 C -0.060 4.060 7 C -0.165 4.165 8 C -0.053 4.053 9 C -0.159 4.159 10 C 0.580 3.420 11 O -0.524 6.524 12 N -0.623 5.623 13 C 0.121 3.879 14 C -0.129 4.129 15 H 0.084 0.916 16 C -0.098 4.098 17 C -0.142 4.142 18 C 0.201 3.799 19 H 0.064 0.936 20 N -0.744 5.744 21 C -0.244 4.244 22 H 0.091 0.909 23 C 0.005 3.995 24 N -0.933 5.933 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.277 1.277 28 H -0.292 1.292 29 C -0.122 4.122 30 H 0.079 0.921 31 C 0.130 3.870 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.083 0.917 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.092 -29.519 -0.935 31.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.206 6.206 4 C 0.131 3.869 5 C -0.237 4.237 6 C -0.078 4.078 7 C -0.183 4.183 8 C -0.071 4.071 9 C -0.162 4.162 10 C 0.368 3.632 11 O -0.400 6.400 12 N -0.358 5.358 13 C -0.001 4.001 14 C -0.149 4.149 15 H 0.102 0.898 16 C -0.136 4.136 17 C -0.183 4.183 18 C 0.091 3.909 19 H 0.082 0.918 20 N -0.386 5.386 21 C -0.374 4.374 22 H 0.109 0.891 23 C -0.190 4.190 24 N -0.581 5.581 25 Si 0.713 3.287 26 H -0.210 1.210 27 H -0.204 1.204 28 H -0.218 1.218 29 C -0.142 4.142 30 H 0.097 0.903 31 C 0.010 3.990 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.194 0.806 48 H 0.069 0.931 49 H 0.102 0.898 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.173 -29.262 -0.608 30.672 hybrid contribution 0.716 -0.150 1.227 1.428 sum 9.889 -29.412 0.619 31.036 Atomic orbital electron populations 1.21765 0.92418 1.02686 1.04077 1.22866 0.96408 0.81799 1.01215 1.86244 1.18142 1.29149 1.87023 1.18919 0.82966 0.92529 0.92444 1.21207 0.94379 0.97859 1.10286 1.21092 0.94212 0.97533 0.94988 1.20996 1.00132 0.92116 1.05090 1.21369 0.90986 1.00026 0.94708 1.19255 0.93823 0.91237 1.11932 1.17615 0.84788 0.81334 0.79470 1.90813 1.28558 1.80356 1.40303 1.49741 1.22476 1.19244 1.44353 1.21393 0.87647 0.98040 0.93019 1.22198 1.00274 0.93896 0.98492 0.89776 1.21809 0.96495 0.94666 1.00654 1.23802 0.97417 0.96732 1.00324 1.20062 0.95623 0.84472 0.90765 0.91789 1.42856 1.64039 1.17277 1.14463 1.19071 1.24563 0.93120 1.00604 0.89137 1.24666 1.00053 0.96417 0.97894 1.69698 1.44643 1.07337 1.36430 0.86581 0.79183 0.76767 0.86160 1.21023 1.20367 1.21799 1.22543 0.97797 0.95328 0.98578 0.90281 1.21499 0.92615 0.82708 1.02227 0.91165 0.91387 0.90371 0.92014 0.91917 0.84967 0.85410 0.85238 0.84461 0.91285 0.90991 0.91675 0.91938 0.92175 0.90719 0.80555 0.93063 0.89848 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.15 0.38 -0.76 16 2 C 0.05 0.43 5.46 37.15 0.20 0.64 16 3 O -0.29 -3.82 8.99 -32.92 -0.30 -4.11 16 4 C 0.18 2.17 6.67 -38.69 -0.26 1.91 16 5 C -0.22 -1.92 9.03 -39.47 -0.36 -2.28 16 6 C -0.06 -0.44 10.03 -39.54 -0.40 -0.84 16 7 C -0.17 -1.29 10.02 -39.63 -0.40 -1.69 16 8 C -0.05 -0.52 8.46 -39.20 -0.33 -0.85 16 9 C -0.16 -2.06 5.53 -104.84 -0.58 -2.64 16 10 C 0.58 9.27 7.27 -12.47 -0.09 9.18 16 11 O -0.52 -10.43 16.57 -8.98 -0.15 -10.58 16 12 N -0.62 -8.87 3.43 -172.79 -0.59 -9.47 16 13 C 0.12 1.32 5.19 -3.86 -0.02 1.30 16 14 C -0.13 -1.53 2.77 -90.27 -0.25 -1.78 16 15 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 16 C -0.10 -1.16 6.72 -25.74 -0.17 -1.33 16 17 C -0.14 -2.22 6.76 -23.17 -0.16 -2.38 16 18 C 0.20 3.64 3.40 -67.70 -0.23 3.41 16 19 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 20 N -0.74 -17.11 4.91 -53.20 -0.26 -17.37 16 21 C -0.24 -6.74 10.45 -15.06 -0.16 -6.90 16 22 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 24 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 25 Si 0.88 22.24 27.74 -169.99 -4.71 17.52 16 26 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 C -0.12 -1.86 2.41 -90.34 -0.22 -2.08 16 30 H 0.08 1.26 7.92 -51.93 -0.41 0.85 16 31 C 0.13 2.03 6.83 -3.31 -0.02 2.00 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 36 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 37 H 0.13 0.84 6.30 -52.49 -0.33 0.51 16 38 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.14 1.19 5.62 -52.49 -0.30 0.89 16 41 H 0.07 0.66 6.30 -51.93 -0.33 0.33 16 42 H 0.07 0.69 8.00 -51.93 -0.42 0.28 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.32 7.98 -51.93 -0.41 0.91 16 47 H 0.36 8.29 5.53 -40.82 -0.23 8.07 16 48 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 49 H 0.08 1.45 8.06 -51.93 -0.42 1.04 16 50 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 395.87 15.07 5.97 5.97 Total: -1.00 -34.92 395.87 -10.29 -45.22 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.87 Total: 6.33 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -3.15 Total: -5.02 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.08 Total: -55.33 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.44 Total: -14.69 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.92 -10.29 -45.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026409781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.756 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds