Wall clock time and date at job start Wed Apr 1 2020 03:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47320 * 2 1 4 4 C 1.35647 * 116.99779 * 179.97438 * 3 2 1 5 5 C 1.38705 * 120.15548 * 359.97298 * 4 3 2 6 6 C 1.38062 * 120.08445 * 180.02562 * 5 4 3 7 7 C 1.38536 * 120.39300 * 359.97438 * 6 5 4 8 8 C 1.37794 * 120.29830 * 359.78403 * 7 6 5 9 9 C 1.39704 * 119.91143 * 0.46891 * 8 7 6 10 10 C 1.47534 * 120.19743 * 179.78543 * 9 8 7 11 11 O 1.21584 * 120.00236 * 222.56714 * 10 9 8 12 12 N 1.34783 * 119.99349 * 42.57355 * 10 9 8 13 13 C 1.49215 * 126.06191 * 355.11154 * 12 10 9 14 14 C 1.50344 * 104.85834 * 172.97576 * 13 12 10 15 15 H 1.09000 * 110.05217 * 278.93848 * 14 13 12 16 16 C 1.51005 * 125.54684 * 144.31714 * 14 13 12 17 17 C 1.56689 * 101.58560 * 203.89747 * 16 14 13 18 18 C 1.55945 * 105.64841 * 25.13980 * 17 16 14 19 19 H 1.09000 * 110.49482 * 248.68285 * 18 17 16 20 20 N 1.46509 * 110.49263 * 126.15710 * 18 17 16 21 21 C 1.36928 * 120.00134 * 88.26230 * 20 18 17 22 22 H 1.07998 * 119.99977 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00162 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00201 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99839 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47389 * 270.00157 * 25 23 21 27 27 H 1.48503 * 109.47408 * 30.00057 * 25 23 21 28 28 H 1.48502 * 109.47487 * 150.00120 * 25 23 21 29 29 C 1.50296 * 104.27482 * 7.42022 * 18 17 16 30 30 H 1.09000 * 109.99377 * 79.65803 * 29 18 17 31 31 C 1.49693 * 126.05273 * 175.15915 * 12 10 9 32 32 H 1.08995 * 109.47543 * 300.00263 * 1 2 3 33 33 H 1.09008 * 109.46790 * 60.00389 * 1 2 3 34 34 H 1.09002 * 109.47035 * 179.97438 * 1 2 3 35 35 H 1.09005 * 109.47481 * 239.99558 * 2 1 3 36 36 H 1.09007 * 109.46923 * 120.00147 * 2 1 3 37 37 H 1.08001 * 119.95709 * 0.05053 * 5 4 3 38 38 H 1.08001 * 119.79765 * 180.02562 * 6 5 4 39 39 H 1.07999 * 119.85031 * 180.02562 * 7 6 5 40 40 H 1.08002 * 120.04403 * 180.25777 * 8 7 6 41 41 H 1.09005 * 110.35728 * 291.82168 * 13 12 10 42 42 H 1.08994 * 110.35633 * 54.01863 * 13 12 10 43 43 H 1.08996 * 111.00507 * 322.05773 * 16 14 13 44 44 H 1.08994 * 111.00538 * 85.90916 * 16 14 13 45 45 H 1.08996 * 110.30001 * 266.08548 * 17 16 14 46 46 H 1.09001 * 110.20636 * 144.14958 * 17 16 14 47 47 H 0.97001 * 119.99662 * 268.25990 * 20 18 17 48 48 H 0.97000 * 120.00007 * 180.02562 * 24 23 21 49 49 H 1.08999 * 110.84873 * 36.63559 * 31 12 10 50 50 H 1.08994 * 110.84703 * 273.01767 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5249 0.0005 5 6 4.1990 0.4272 0.0016 6 6 5.5675 0.6096 0.0027 7 6 6.1043 1.8868 0.0022 8 6 5.2768 2.9886 -0.0039 9 6 3.8902 2.8186 0.0003 10 6 2.9984 3.9939 -0.0014 11 8 2.0151 4.0120 0.7134 12 7 3.2739 5.0475 -0.7955 13 6 4.4896 5.2133 -1.6447 14 6 4.2293 6.4542 -2.4526 15 1 3.5940 6.2180 -3.3063 16 6 5.2683 7.4727 -2.8568 17 6 4.3881 8.7502 -3.0761 18 6 3.1211 8.5452 -2.1905 19 1 2.2397 8.3955 -2.8141 20 7 2.9279 9.6912 -1.2984 21 6 2.2036 10.7736 -1.7212 22 1 1.7751 10.7827 -2.7125 23 6 2.0202 11.8592 -0.8758 24 7 1.3244 12.8998 -1.2824 25 14 2.7608 11.8431 0.8390 26 1 1.7880 11.2523 1.7929 27 1 4.0042 11.0311 0.8337 28 1 3.0791 13.2330 1.2539 29 6 3.4207 7.3048 -1.3964 30 1 4.0736 7.5476 -0.5581 31 6 2.4149 6.2593 -0.9810 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.7881 -0.5716 0.0012 38 1 6.2233 -0.2484 0.0031 39 1 7.1761 2.0194 0.0026 40 1 5.6998 3.9824 -0.0085 41 1 5.3732 5.3456 -1.0202 42 1 4.6147 4.3514 -2.3000 43 1 5.9937 7.6288 -2.0584 44 1 5.7648 7.1785 -3.7814 45 1 4.1038 8.8381 -4.1247 46 1 4.9302 9.6403 -2.7568 47 1 3.3131 9.6831 -0.4082 48 1 1.1966 13.6585 -0.6918 49 1 1.9299 6.5379 -0.0454 50 1 1.6781 6.0958 -1.7674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026409781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:18 Heat of formation + Delta-G solvation = -30.355600 kcal Electronic energy + Delta-G solvation = -30420.596654 eV Core-core repulsion = 26413.170945 eV Total energy + Delta-G solvation = -4007.425708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.98038 -41.11455 -39.56806 -38.36479 -36.90151 -35.11823 -33.09931 -33.02511 -32.48195 -30.73648 -30.44995 -29.88063 -27.17111 -25.47141 -24.91004 -24.54605 -23.37667 -22.61204 -21.54246 -20.84468 -20.54954 -19.60009 -19.04092 -18.12097 -17.73214 -17.17909 -16.98247 -16.66165 -16.28626 -16.07049 -15.92818 -15.66564 -15.23175 -15.01550 -14.86747 -14.51474 -14.40654 -14.28455 -14.24140 -13.66723 -13.48673 -13.43714 -13.26217 -13.19354 -12.96014 -12.83163 -12.66790 -12.56583 -12.34628 -12.23446 -12.09832 -12.00667 -11.83147 -11.70814 -11.58003 -11.41336 -11.07782 -11.00641 -10.85665 -10.06071 -9.76574 -9.29952 -9.23363 -8.02611 -5.34912 -0.03876 0.40882 1.35241 1.39212 1.45172 1.65280 1.82982 2.19427 2.47173 2.76460 2.91221 3.29477 3.48208 3.51712 3.77866 3.83068 3.94319 3.95317 3.99672 4.11361 4.16431 4.22458 4.26597 4.32297 4.35429 4.41859 4.47313 4.50636 4.53755 4.64633 4.67504 4.73863 4.78531 4.83998 4.86183 4.90490 4.92554 5.05367 5.12719 5.15760 5.22875 5.25259 5.33463 5.34246 5.48046 5.51658 5.54141 5.78659 5.79118 6.22514 6.35347 6.47211 7.06898 7.07877 7.85057 8.02771 9.19098 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.002642 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.405774 B =10595.881002 C =11369.187833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.332 6.332 4 C 0.155 3.845 5 C -0.218 4.218 6 C -0.050 4.050 7 C -0.158 4.158 8 C -0.054 4.054 9 C -0.191 4.191 10 C 0.573 3.427 11 O -0.582 6.582 12 N -0.621 5.621 13 C 0.123 3.877 14 C -0.107 4.107 15 H 0.087 0.913 16 C -0.081 4.081 17 C -0.138 4.138 18 C 0.190 3.810 19 H 0.048 0.952 20 N -0.749 5.749 21 C -0.223 4.223 22 H 0.059 0.941 23 C -0.064 4.064 24 N -0.984 5.984 25 Si 0.950 3.050 26 H -0.287 1.287 27 H -0.250 1.250 28 H -0.295 1.295 29 C -0.123 4.123 30 H 0.077 0.923 31 C 0.129 3.871 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.155 0.845 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.148 0.852 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.363 0.637 48 H 0.257 0.743 49 H 0.053 0.947 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.355 -33.314 -1.124 36.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.246 6.246 4 C 0.107 3.893 5 C -0.236 4.236 6 C -0.068 4.068 7 C -0.176 4.176 8 C -0.072 4.072 9 C -0.195 4.195 10 C 0.364 3.636 11 O -0.462 6.462 12 N -0.355 5.355 13 C 0.003 3.997 14 C -0.126 4.126 15 H 0.105 0.895 16 C -0.119 4.119 17 C -0.178 4.178 18 C 0.082 3.918 19 H 0.066 0.934 20 N -0.392 5.392 21 C -0.355 4.355 22 H 0.077 0.923 23 C -0.256 4.256 24 N -0.635 5.635 25 Si 0.778 3.222 26 H -0.213 1.213 27 H -0.175 1.175 28 H -0.222 1.222 29 C -0.144 4.144 30 H 0.095 0.905 31 C 0.007 3.993 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.173 0.827 38 H 0.183 0.817 39 H 0.180 0.820 40 H 0.165 0.835 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.113 0.887 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.197 0.803 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.506 -33.120 -0.843 35.778 hybrid contribution -0.658 0.917 1.181 1.634 sum 12.847 -32.203 0.338 34.673 Atomic orbital electron populations 1.21811 0.92464 1.04145 1.02465 1.23133 0.96484 0.80488 1.02838 1.86205 1.19246 1.31681 1.87445 1.19264 0.83106 0.93307 0.93585 1.21512 0.94846 0.97842 1.09399 1.21592 0.93941 0.98773 0.92446 1.21402 1.01474 0.91495 1.03232 1.21524 0.89674 1.01486 0.94545 1.19227 0.94683 0.90171 1.15381 1.18280 0.84573 0.82207 0.78560 1.90764 1.31234 1.81489 1.42753 1.49784 1.23178 1.18200 1.44332 1.21605 0.86842 0.98176 0.93075 1.22171 0.99557 0.93518 0.97387 0.89466 1.21726 0.95758 0.91727 1.02703 1.23620 0.96293 0.98291 0.99616 1.20334 0.96503 0.84112 0.90877 0.93417 1.42887 1.63622 1.17373 1.15337 1.19038 1.23240 0.94137 0.99041 0.92280 1.25439 1.01520 0.96338 1.02257 1.69872 1.47211 1.08373 1.38074 0.85484 0.79250 0.76731 0.80758 1.21342 1.17494 1.22190 1.22294 0.98144 0.94455 0.99457 0.90462 1.21351 0.93173 0.84080 1.00673 0.93077 0.92670 0.87311 0.89927 0.90480 0.82707 0.81732 0.81996 0.83450 0.88858 0.88660 0.90453 0.88725 0.91710 0.92725 0.80340 0.93457 0.92822 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 10.28 71.98 0.74 -1.55 16 2 C 0.04 0.71 5.46 71.98 0.39 1.10 16 3 O -0.33 -8.84 8.99 -75.97 -0.68 -9.52 16 4 C 0.15 3.61 6.67 22.85 0.15 3.76 16 5 C -0.22 -3.14 9.03 22.34 0.20 -2.94 16 6 C -0.05 -0.49 10.03 22.30 0.22 -0.27 16 7 C -0.16 -1.71 10.02 22.24 0.22 -1.49 16 8 C -0.05 -0.90 8.46 22.52 0.19 -0.71 16 9 C -0.19 -4.77 5.53 -20.01 -0.11 -4.88 16 10 C 0.57 18.78 7.27 86.69 0.63 19.41 16 11 O -0.58 -24.75 16.57 9.67 0.16 -24.59 16 12 N -0.62 -17.51 3.43 -818.86 -2.81 -20.31 16 13 C 0.12 2.31 5.19 84.99 0.44 2.75 16 14 C -0.11 -2.23 2.77 -10.57 -0.03 -2.26 16 15 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 16 C -0.08 -1.60 6.72 31.23 0.21 -1.39 16 17 C -0.14 -4.11 6.76 32.90 0.22 -3.89 16 18 C 0.19 6.92 3.40 45.14 0.15 7.07 16 19 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 20 N -0.75 -34.90 4.91 -322.24 -1.58 -36.48 16 21 C -0.22 -12.78 10.45 84.03 0.88 -11.91 16 22 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 23 C -0.06 -3.85 5.50 84.86 0.47 -3.39 16 24 N -0.98 -64.13 13.97 21.65 0.30 -63.83 16 25 Si 0.95 46.86 27.74 68.60 1.90 48.76 16 26 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 28 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 29 C -0.12 -3.68 2.41 -10.61 -0.03 -3.71 16 30 H 0.08 2.37 7.92 -2.39 -0.02 2.35 16 31 C 0.13 4.16 6.83 85.08 0.58 4.74 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.91 7.66 -2.38 -0.02 0.89 16 36 H 0.08 0.95 7.66 -2.38 -0.02 0.93 16 37 H 0.16 1.41 6.30 -2.91 -0.02 1.39 16 38 H 0.17 0.45 8.06 -2.91 -0.02 0.42 16 39 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 40 H 0.15 2.00 5.62 -2.91 -0.02 1.99 16 41 H 0.09 1.36 6.30 -2.38 -0.02 1.34 16 42 H 0.10 1.44 8.00 -2.39 -0.02 1.42 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.05 1.87 7.98 -2.39 -0.02 1.85 16 47 H 0.36 16.54 5.53 -92.71 -0.51 16.03 16 48 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 49 H 0.05 2.02 8.06 -2.39 -0.02 2.00 16 50 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -83.17 395.87 3.21 -79.97 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.37 Total: 25.55 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 5.54 Total: 0.45 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -4.09 Total: -120.62 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.52 Total: -34.11 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.90 Total: 48.76 kcal Total: -83.17 3.21 -79.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026409781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.613 kcal (2) G-P(sol) polarization free energy of solvation -83.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds