Wall clock time and date at job start Wed Apr 1 2020 03:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42903 * 109.47167 * 2 1 4 4 C 1.35709 * 117.00003 * 180.02562 * 3 2 1 5 5 C 1.39002 * 119.91179 * 179.97438 * 4 3 2 6 6 C 1.37700 * 120.09047 * 179.97438 * 5 4 3 7 7 C 1.39735 * 119.90905 * 0.02562 * 6 5 4 8 8 C 1.47609 * 120.08687 * 180.02562 * 7 6 5 9 9 O 1.21584 * 119.99678 * 206.95804 * 8 7 6 10 10 N 1.34773 * 120.00130 * 26.95302 * 8 7 6 11 11 C 1.49630 * 126.07222 * 356.36533 * 10 8 7 12 12 C 1.51519 * 102.49408 * 154.35365 * 11 10 8 13 13 H 1.09004 * 111.13039 * 287.40436 * 12 11 10 14 14 C 1.51568 * 123.33615 * 151.63501 * 12 11 10 15 15 C 1.56335 * 101.81413 * 207.98821 * 14 12 11 16 16 C 1.56006 * 105.77138 * 25.43009 * 15 14 12 17 17 H 1.08994 * 110.52051 * 125.72563 * 16 15 14 18 18 N 1.46499 * 110.52474 * 248.33940 * 16 15 14 19 19 C 1.36937 * 119.99536 * 271.65402 * 18 16 15 20 20 H 1.07998 * 120.00428 * 0.02562 * 19 18 16 21 21 C 1.38818 * 119.99793 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99675 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99964 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47112 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47074 * 299.99951 * 23 21 19 26 26 H 1.48502 * 109.47508 * 60.00097 * 23 21 19 27 27 C 1.49701 * 104.10931 * 7.03169 * 16 15 14 28 28 H 1.09008 * 108.54362 * 77.89641 * 27 16 15 29 29 C 1.49280 * 126.07403 * 176.36706 * 10 8 7 30 30 C 1.39735 * 119.82434 * 0.27001 * 7 6 5 31 31 C 1.37695 * 119.91238 * 359.47020 * 30 7 6 32 32 H 1.09000 * 109.47281 * 299.99973 * 1 2 3 33 33 H 1.08999 * 109.47495 * 59.99756 * 1 2 3 34 34 H 1.09005 * 109.47222 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47281 * 240.00027 * 2 1 3 36 36 H 1.09003 * 109.47191 * 119.99831 * 2 1 3 37 37 H 1.08003 * 119.95156 * 0.02562 * 5 4 3 38 38 H 1.07995 * 120.04832 * 180.02562 * 6 5 4 39 39 H 1.09000 * 110.79857 * 36.09962 * 11 10 8 40 40 H 1.09004 * 110.80020 * 272.60632 * 11 10 8 41 41 H 1.08997 * 110.96045 * 89.84785 * 14 12 11 42 42 H 1.09001 * 110.98556 * 326.12840 * 14 12 11 43 43 H 1.09003 * 110.18567 * 266.36060 * 15 14 12 44 44 H 1.08994 * 110.25428 * 144.54717 * 15 14 12 45 45 H 0.96993 * 120.00288 * 91.66101 * 18 16 15 46 46 H 0.97004 * 119.99339 * 179.97438 * 22 21 19 47 47 H 1.09008 * 110.39783 * 292.41042 * 29 10 8 48 48 H 1.08994 * 110.40138 * 54.69577 * 29 10 8 49 49 H 1.08007 * 120.04489 * 179.70716 * 30 7 6 50 50 H 1.08009 * 119.95920 * 180.25088 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5251 -0.0005 5 6 3.8810 2.8104 -0.0011 6 6 5.2456 2.9951 -0.0011 7 6 6.0985 1.8882 -0.0011 8 6 7.5618 2.0816 -0.0006 9 8 8.2876 1.2309 -0.4779 10 7 8.0934 3.2012 0.5289 11 6 7.3295 4.3638 1.0800 12 6 8.3094 4.9603 2.0698 13 1 8.4058 4.3314 2.9549 14 6 8.3292 6.4301 2.4395 15 6 9.8298 6.6435 2.8228 16 6 10.6255 5.5490 2.0466 17 1 11.4186 6.0025 1.4522 18 7 11.1817 4.5624 2.9757 19 6 12.4153 4.7669 3.5339 20 1 12.9780 5.6558 3.2894 21 6 12.9427 3.8318 4.4139 22 7 12.2572 2.7483 4.7113 23 14 14.6251 4.1112 5.1758 24 1 14.9573 2.9750 6.0724 25 1 15.6454 4.2077 4.1011 26 1 14.6106 5.3727 5.9593 27 6 9.6013 4.9143 1.1582 28 1 9.4269 5.5711 0.3058 29 6 9.5488 3.5017 0.6698 30 6 5.5624 0.5978 -0.0068 31 6 4.1968 0.4215 -0.0013 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.2211 3.6653 -0.0007 38 1 5.6561 3.9939 -0.0012 39 1 6.4245 4.0275 1.5859 40 1 7.0912 5.0787 0.2924 41 1 7.6774 6.6269 3.2907 42 1 8.0524 7.0507 1.5873 43 1 9.9654 6.5165 3.8969 44 1 10.1597 7.6364 2.5173 45 1 10.6763 3.7642 3.1954 46 1 12.6259 2.0947 5.3260 47 1 10.0067 2.8308 1.3968 48 1 10.0498 3.4146 -0.2943 49 1 6.2183 -0.2603 -0.0116 50 1 3.7816 -0.5756 -0.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026410333.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:30 Heat of formation + Delta-G solvation = -8.284295 kcal Electronic energy + Delta-G solvation = -30012.128500 eV Core-core repulsion = 26005.659875 eV Total energy + Delta-G solvation = -4006.468624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.86369 -40.19483 -38.75611 -37.19234 -35.25882 -33.30725 -32.42426 -31.47890 -30.82579 -30.42468 -28.81268 -28.48416 -25.56035 -24.67723 -23.87532 -23.28775 -22.44778 -21.89396 -20.12815 -19.58867 -18.80841 -18.51129 -17.43953 -17.09011 -16.52012 -16.37974 -15.92903 -15.22283 -15.10444 -14.71976 -14.44446 -14.28774 -13.92432 -13.80914 -13.74171 -13.61035 -13.53219 -13.14692 -12.89589 -12.72392 -12.55989 -12.31096 -12.17690 -12.13634 -11.73845 -11.41620 -11.23746 -11.10818 -11.00913 -10.90788 -10.79685 -10.66815 -10.46281 -10.26649 -10.10249 -9.77802 -9.60869 -9.55798 -9.27555 -8.89765 -8.59078 -8.36893 -6.96192 -5.75837 -3.05014 0.81102 1.10047 2.78298 2.85194 2.99027 3.44717 3.49455 3.50414 3.68386 4.18042 4.42600 4.47833 4.53585 4.55288 4.59927 4.67469 4.79192 4.96762 4.97264 5.01134 5.14982 5.22567 5.29553 5.33501 5.35474 5.40569 5.48259 5.56950 5.58369 5.64720 5.74663 5.78343 5.85035 5.88682 5.95206 6.02081 6.03491 6.15058 6.19522 6.28976 6.31180 6.37767 6.40929 6.49388 6.55576 6.67349 6.82310 7.04568 7.05819 7.64379 7.71241 8.30167 8.42331 9.53607 10.10309 10.44875 11.46366 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.002257 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.689928 B =12405.049081 C =12980.332581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.149 3.851 5 C -0.161 4.161 6 C -0.059 4.059 7 C -0.162 4.162 8 C 0.574 3.426 9 O -0.541 6.541 10 N -0.617 5.617 11 C 0.108 3.892 12 C -0.126 4.126 13 H 0.095 0.905 14 C -0.098 4.098 15 C -0.145 4.145 16 C 0.197 3.803 17 H 0.055 0.945 18 N -0.718 5.718 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.292 1.292 25 H -0.286 1.286 26 H -0.287 1.287 27 C -0.120 4.120 28 H 0.068 0.932 29 C 0.133 3.867 30 C -0.021 4.021 31 C -0.218 4.218 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.136 0.864 38 H 0.147 0.853 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.085 0.915 48 H 0.070 0.930 49 H 0.137 0.863 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.524 0.363 -10.320 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.228 6.228 4 C 0.103 3.897 5 C -0.179 4.179 6 C -0.077 4.077 7 C -0.165 4.165 8 C 0.364 3.636 9 O -0.420 6.420 10 N -0.351 5.351 11 C -0.013 4.013 12 C -0.145 4.145 13 H 0.113 0.887 14 C -0.136 4.136 15 C -0.186 4.186 16 C 0.085 3.915 17 H 0.073 0.927 18 N -0.359 5.359 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.213 1.213 26 H -0.213 1.213 27 C -0.139 4.139 28 H 0.087 0.913 29 C 0.012 3.988 30 C -0.040 4.040 31 C -0.236 4.236 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.103 0.897 48 H 0.088 0.912 49 H 0.155 0.845 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.139 -0.008 -10.563 25.436 hybrid contribution 0.799 -0.383 0.614 1.078 sum -22.341 -0.392 -9.949 24.459 Atomic orbital electron populations 1.21780 0.92586 1.02976 1.03593 1.22848 0.95997 0.81761 1.01731 1.86033 1.19044 1.29655 1.88018 1.19246 0.82237 0.94228 0.93960 1.20363 0.94971 0.94876 1.07704 1.21684 0.92244 0.99370 0.94450 1.19824 0.92994 0.94309 1.09385 1.17808 0.87340 0.80589 0.77910 1.90792 1.62025 1.42663 1.46501 1.49699 1.08055 1.17238 1.60092 1.22126 0.95312 0.87800 0.96100 1.22715 0.95394 0.98153 0.98260 0.88712 1.21819 0.98063 0.93394 1.00360 1.23859 0.92978 0.99246 1.02512 1.20020 0.92067 0.89818 0.89564 0.92654 1.42419 1.19204 1.22651 1.51613 1.19194 0.93784 1.04205 1.20050 0.91175 1.24745 0.98618 0.96999 1.00477 1.69649 1.38108 1.11145 1.39033 0.86286 0.84240 0.76840 0.78897 1.21789 1.21294 1.21337 1.22061 0.98138 0.95577 0.98174 0.91337 1.20926 0.79597 0.96628 1.01651 1.21026 0.94223 0.96534 0.92206 1.21189 0.93926 0.98279 1.10246 0.91429 0.91480 0.90266 0.91787 0.91720 0.84627 0.83586 0.89912 0.90845 0.92035 0.91991 0.90553 0.92856 0.78107 0.93452 0.89715 0.91184 0.84545 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.28 37.15 0.38 -0.33 16 2 C 0.05 0.33 5.45 37.15 0.20 0.53 16 3 O -0.31 -2.97 10.12 -18.83 -0.19 -3.16 16 4 C 0.15 1.55 6.70 -39.02 -0.26 1.29 16 5 C -0.16 -1.60 9.97 -39.49 -0.39 -2.00 16 6 C -0.06 -0.64 7.94 -39.22 -0.31 -0.95 16 7 C -0.16 -2.18 5.73 -104.96 -0.60 -2.78 16 8 C 0.57 9.59 7.66 -12.44 -0.10 9.49 16 9 O -0.54 -11.03 17.01 5.29 0.09 -10.94 16 10 N -0.62 -9.53 3.43 -172.85 -0.59 -10.13 16 11 C 0.11 1.30 4.72 -3.05 -0.01 1.28 16 12 C -0.13 -1.77 3.08 -89.24 -0.28 -2.04 16 13 H 0.09 1.60 7.96 -51.93 -0.41 1.19 16 14 C -0.10 -1.25 6.62 -25.66 -0.17 -1.42 16 15 C -0.15 -2.33 6.74 -23.33 -0.16 -2.49 16 16 C 0.20 3.65 3.45 -67.96 -0.23 3.42 16 17 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 18 N -0.72 -17.14 4.89 -53.45 -0.26 -17.40 16 19 C -0.24 -6.50 9.97 -15.06 -0.15 -6.65 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 23 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C -0.12 -1.88 2.27 -91.10 -0.21 -2.08 16 28 H 0.07 0.95 8.00 -51.92 -0.42 0.53 16 29 C 0.13 2.30 6.65 -4.20 -0.03 2.27 16 30 C -0.02 -0.26 9.58 -39.22 -0.38 -0.64 16 31 C -0.22 -2.23 9.01 -39.50 -0.36 -2.59 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 36 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 37 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 38 H 0.15 1.33 4.60 -52.49 -0.24 1.09 16 39 H 0.08 0.89 6.17 -51.93 -0.32 0.57 16 40 H 0.07 0.72 7.44 -51.93 -0.39 0.33 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.43 7.98 -51.93 -0.41 1.01 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.38 9.90 6.73 -40.82 -0.27 9.62 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.08 1.76 7.17 -51.92 -0.37 1.38 16 48 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 49 H 0.14 1.69 7.87 -52.48 -0.41 1.28 16 50 H 0.13 1.04 6.28 -52.48 -0.33 0.71 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -32.71 395.50 -10.16 -42.87 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.72 Total: 8.88 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.14 Total: -6.12 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.13 Total: -54.75 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.10 Total: -14.10 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.71 -10.16 -42.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026410333.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.585 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds