Wall clock time and date at job start Wed Apr 1 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42903 * 109.47167 * 2 1 4 4 C 1.35709 * 117.00003 * 180.02562 * 3 2 1 5 5 C 1.39002 * 119.91179 * 179.97438 * 4 3 2 6 6 C 1.37700 * 120.09047 * 179.97438 * 5 4 3 7 7 C 1.39735 * 119.90905 * 0.02562 * 6 5 4 8 8 C 1.47609 * 120.08687 * 180.02562 * 7 6 5 9 9 O 1.21584 * 119.99678 * 206.95804 * 8 7 6 10 10 N 1.34773 * 120.00130 * 26.95302 * 8 7 6 11 11 C 1.49630 * 126.07222 * 356.36533 * 10 8 7 12 12 C 1.51519 * 102.49408 * 154.35365 * 11 10 8 13 13 H 1.09004 * 111.13039 * 287.40436 * 12 11 10 14 14 C 1.51568 * 123.33615 * 151.63501 * 12 11 10 15 15 C 1.56335 * 101.81413 * 207.98821 * 14 12 11 16 16 C 1.56006 * 105.77138 * 25.43009 * 15 14 12 17 17 H 1.08994 * 110.52051 * 125.72563 * 16 15 14 18 18 N 1.46499 * 110.52474 * 248.33940 * 16 15 14 19 19 C 1.36937 * 119.99536 * 271.65402 * 18 16 15 20 20 H 1.07998 * 120.00428 * 0.02562 * 19 18 16 21 21 C 1.38818 * 119.99793 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99675 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99964 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47112 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47074 * 299.99951 * 23 21 19 26 26 H 1.48502 * 109.47508 * 60.00097 * 23 21 19 27 27 C 1.49701 * 104.10931 * 7.03169 * 16 15 14 28 28 H 1.09008 * 108.54362 * 77.89641 * 27 16 15 29 29 C 1.49280 * 126.07403 * 176.36706 * 10 8 7 30 30 C 1.39735 * 119.82434 * 0.27001 * 7 6 5 31 31 C 1.37695 * 119.91238 * 359.47020 * 30 7 6 32 32 H 1.09000 * 109.47281 * 299.99973 * 1 2 3 33 33 H 1.08999 * 109.47495 * 59.99756 * 1 2 3 34 34 H 1.09005 * 109.47222 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47281 * 240.00027 * 2 1 3 36 36 H 1.09003 * 109.47191 * 119.99831 * 2 1 3 37 37 H 1.08003 * 119.95156 * 0.02562 * 5 4 3 38 38 H 1.07995 * 120.04832 * 180.02562 * 6 5 4 39 39 H 1.09000 * 110.79857 * 36.09962 * 11 10 8 40 40 H 1.09004 * 110.80020 * 272.60632 * 11 10 8 41 41 H 1.08997 * 110.96045 * 89.84785 * 14 12 11 42 42 H 1.09001 * 110.98556 * 326.12840 * 14 12 11 43 43 H 1.09003 * 110.18567 * 266.36060 * 15 14 12 44 44 H 1.08994 * 110.25428 * 144.54717 * 15 14 12 45 45 H 0.96993 * 120.00288 * 91.66101 * 18 16 15 46 46 H 0.97004 * 119.99339 * 179.97438 * 22 21 19 47 47 H 1.09008 * 110.39783 * 292.41042 * 29 10 8 48 48 H 1.08994 * 110.40138 * 54.69577 * 29 10 8 49 49 H 1.08007 * 120.04489 * 179.70716 * 30 7 6 50 50 H 1.08009 * 119.95920 * 180.25088 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5251 -0.0005 5 6 3.8810 2.8104 -0.0011 6 6 5.2456 2.9951 -0.0011 7 6 6.0985 1.8882 -0.0011 8 6 7.5618 2.0816 -0.0006 9 8 8.2876 1.2309 -0.4779 10 7 8.0934 3.2012 0.5289 11 6 7.3295 4.3638 1.0800 12 6 8.3094 4.9603 2.0698 13 1 8.4058 4.3314 2.9549 14 6 8.3292 6.4301 2.4395 15 6 9.8298 6.6435 2.8228 16 6 10.6255 5.5490 2.0466 17 1 11.4186 6.0025 1.4522 18 7 11.1817 4.5624 2.9757 19 6 12.4153 4.7669 3.5339 20 1 12.9780 5.6558 3.2894 21 6 12.9427 3.8318 4.4139 22 7 12.2572 2.7483 4.7113 23 14 14.6251 4.1112 5.1758 24 1 14.9573 2.9750 6.0724 25 1 15.6454 4.2077 4.1011 26 1 14.6106 5.3727 5.9593 27 6 9.6013 4.9143 1.1582 28 1 9.4269 5.5711 0.3058 29 6 9.5488 3.5017 0.6698 30 6 5.5624 0.5978 -0.0068 31 6 4.1968 0.4215 -0.0013 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.2211 3.6653 -0.0007 38 1 5.6561 3.9939 -0.0012 39 1 6.4245 4.0275 1.5859 40 1 7.0912 5.0787 0.2924 41 1 7.6774 6.6269 3.2907 42 1 8.0524 7.0507 1.5873 43 1 9.9654 6.5165 3.8969 44 1 10.1597 7.6364 2.5173 45 1 10.6763 3.7642 3.1954 46 1 12.6259 2.0947 5.3260 47 1 10.0067 2.8308 1.3968 48 1 10.0498 3.4146 -0.2943 49 1 6.2183 -0.2603 -0.0116 50 1 3.7816 -0.5756 -0.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026410333.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:29 Heat of formation + Delta-G solvation = -28.398438 kcal Electronic energy + Delta-G solvation = -30013.000714 eV Core-core repulsion = 26005.659875 eV Total energy + Delta-G solvation = -4007.340839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.98068 -41.10435 -39.92233 -38.13004 -36.74722 -35.05840 -33.00398 -32.60389 -32.35477 -31.35427 -30.04819 -29.78108 -27.04427 -25.52077 -25.13728 -24.77110 -23.45970 -22.66976 -21.21735 -20.73625 -20.24432 -19.42144 -19.19511 -18.21708 -17.61653 -17.10222 -16.94425 -16.65706 -16.33593 -16.07139 -15.82989 -15.43018 -15.31873 -14.97363 -14.68324 -14.63932 -14.44876 -14.29069 -14.01430 -13.75515 -13.54433 -13.33440 -13.17517 -13.05136 -12.92587 -12.82708 -12.66825 -12.54891 -12.30551 -12.21991 -12.05546 -11.89609 -11.73466 -11.67682 -11.47884 -11.36447 -11.04543 -10.90464 -10.84815 -10.11000 -9.81855 -9.27637 -8.96511 -7.92141 -5.19513 -0.11039 0.28297 1.46136 1.49105 1.54875 1.67217 1.82948 2.16045 2.57323 2.74190 2.98876 3.41697 3.48566 3.69895 3.75049 3.77338 3.96389 4.06339 4.07115 4.11925 4.18528 4.20843 4.28455 4.35613 4.38518 4.43024 4.48708 4.52256 4.61918 4.68002 4.73725 4.83339 4.87562 4.93245 4.95221 4.96023 4.98930 5.08427 5.12589 5.17983 5.20387 5.26174 5.29198 5.35254 5.40935 5.46770 5.55050 5.59260 5.71526 6.29990 6.33582 6.43533 7.03382 7.35679 8.14533 8.35524 9.31177 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.002257 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.689928 B =12405.049081 C =12980.332581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.320 6.320 4 C 0.151 3.849 5 C -0.158 4.158 6 C -0.050 4.050 7 C -0.186 4.186 8 C 0.567 3.433 9 O -0.595 6.595 10 N -0.616 5.616 11 C 0.112 3.888 12 C -0.114 4.114 13 H 0.055 0.945 14 C -0.082 4.082 15 C -0.139 4.139 16 C 0.183 3.817 17 H 0.051 0.949 18 N -0.731 5.731 19 C -0.233 4.233 20 H 0.078 0.922 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.970 3.030 24 H -0.301 1.301 25 H -0.280 1.280 26 H -0.276 1.276 27 C -0.121 4.121 28 H 0.104 0.896 29 C 0.136 3.864 30 C -0.036 4.036 31 C -0.215 4.215 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.370 0.630 46 H 0.247 0.753 47 H 0.036 0.964 48 H 0.063 0.937 49 H 0.123 0.877 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.567 3.060 -11.377 29.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 O -0.234 6.234 4 C 0.104 3.896 5 C -0.176 4.176 6 C -0.068 4.068 7 C -0.189 4.189 8 C 0.358 3.642 9 O -0.478 6.478 10 N -0.349 5.349 11 C -0.008 4.008 12 C -0.133 4.133 13 H 0.074 0.926 14 C -0.119 4.119 15 C -0.179 4.179 16 C 0.074 3.926 17 H 0.069 0.931 18 N -0.371 5.371 19 C -0.365 4.365 20 H 0.096 0.904 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.800 3.200 24 H -0.228 1.228 25 H -0.206 1.206 26 H -0.202 1.202 27 C -0.141 4.141 28 H 0.123 0.877 29 C 0.014 3.986 30 C -0.056 4.056 31 C -0.233 4.233 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.180 0.820 38 H 0.186 0.814 39 H 0.119 0.881 40 H 0.134 0.866 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.202 0.798 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.081 0.919 49 H 0.141 0.859 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -26.221 2.774 -11.636 28.821 hybrid contribution 1.651 -1.239 0.886 2.247 sum -24.570 1.534 -10.750 26.863 Atomic orbital electron populations 1.21807 0.91263 1.04189 1.03385 1.23148 0.97098 0.80592 1.02537 1.86045 1.18259 1.31513 1.87575 1.19449 0.82789 0.94463 0.92890 1.20673 0.94840 0.95644 1.06480 1.21825 0.92264 0.99257 0.93423 1.19681 0.91053 0.95795 1.12357 1.18450 0.88712 0.79990 0.77006 1.90747 1.63564 1.44427 1.49019 1.49764 1.07417 1.18114 1.59607 1.22422 0.94714 0.86963 0.96702 1.22638 0.94965 0.98863 0.96869 0.92612 1.21780 0.95386 0.92350 1.02429 1.23653 0.95395 0.98985 0.99879 1.20375 0.93011 0.89843 0.89355 0.93072 1.42613 1.18536 1.23457 1.52463 1.19626 0.94638 1.03628 1.18603 0.90374 1.25544 1.02334 0.97272 1.02138 1.69830 1.39830 1.12316 1.40401 0.85250 0.80243 0.76560 0.77958 1.22757 1.20640 1.20189 1.21928 0.98127 0.94710 0.99294 0.87739 1.20694 0.81077 0.96914 0.99904 1.21046 0.95206 0.96041 0.93269 1.21341 0.92847 0.99671 1.09463 0.91710 0.91587 0.88380 0.90872 0.91033 0.81978 0.81439 0.88084 0.86586 0.90632 0.88001 0.93881 0.90598 0.79755 0.94382 0.94591 0.91905 0.85911 0.82836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 71.98 0.74 -0.30 16 2 C 0.04 0.42 5.45 71.98 0.39 0.81 16 3 O -0.32 -5.18 10.12 -90.30 -0.91 -6.09 16 4 C 0.15 2.74 6.70 22.64 0.15 2.89 16 5 C -0.16 -2.61 9.97 22.33 0.22 -2.39 16 6 C -0.05 -0.93 7.94 22.50 0.18 -0.76 16 7 C -0.19 -4.94 5.73 -20.08 -0.12 -5.05 16 8 C 0.57 19.54 7.66 86.72 0.66 20.21 16 9 O -0.60 -25.97 17.01 -3.98 -0.07 -26.04 16 10 N -0.62 -19.04 3.43 -819.04 -2.81 -21.85 16 11 C 0.11 2.34 4.72 85.29 0.40 2.74 16 12 C -0.11 -2.98 3.08 -9.90 -0.03 -3.01 16 13 H 0.06 1.91 7.96 -2.38 -0.02 1.89 16 14 C -0.08 -1.74 6.62 31.29 0.21 -1.54 16 15 C -0.14 -4.19 6.74 32.80 0.22 -3.97 16 16 C 0.18 6.75 3.45 44.98 0.16 6.91 16 17 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 18 N -0.73 -36.27 4.89 -323.02 -1.58 -37.85 16 19 C -0.23 -12.87 9.97 84.03 0.84 -12.03 16 20 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 21 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 22 N -0.97 -61.28 13.06 21.65 0.28 -61.00 16 23 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 24 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 27 C -0.12 -3.68 2.27 -11.10 -0.03 -3.71 16 28 H 0.10 2.51 8.00 -2.38 -0.02 2.49 16 29 C 0.14 4.92 6.65 84.74 0.56 5.48 16 30 C -0.04 -0.92 9.58 22.50 0.22 -0.70 16 31 C -0.21 -4.12 9.01 22.32 0.20 -3.92 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 35 H 0.07 0.64 7.65 -2.39 -0.02 0.62 16 36 H 0.07 0.66 7.65 -2.39 -0.02 0.64 16 37 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.17 2.29 4.60 -2.91 -0.01 2.28 16 39 H 0.10 1.82 6.17 -2.39 -0.01 1.80 16 40 H 0.12 1.56 7.44 -2.38 -0.02 1.54 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.04 1.59 7.98 -2.39 -0.02 1.57 16 44 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.37 20.34 6.73 -92.71 -0.62 19.71 16 46 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 47 H 0.04 1.63 7.17 -2.38 -0.02 1.62 16 48 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.12 3.31 7.87 -2.91 -0.02 3.29 16 50 H 0.15 2.15 6.28 -2.91 -0.02 2.13 16 Total: -1.00 -77.46 395.50 2.72 -74.74 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.33 Total: 31.56 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 5.45 Total: -2.59 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -4.10 Total: -120.70 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.98 Total: -32.13 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -77.46 2.72 -74.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026410333.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.339 kcal (2) G-P(sol) polarization free energy of solvation -77.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds