Wall clock time and date at job start Wed Apr 1 2020 03:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47176 * 2 1 4 4 C 1.35713 * 117.00212 * 179.97438 * 3 2 1 5 5 C 1.38986 * 119.91204 * 180.02562 * 4 3 2 6 6 C 1.37708 * 120.09038 * 180.02562 * 5 4 3 7 7 C 1.39732 * 119.90733 * 359.97438 * 6 5 4 8 8 C 1.47605 * 120.08599 * 179.97438 * 7 6 5 9 9 O 1.21582 * 119.99819 * 28.58228 * 8 7 6 10 10 N 1.34780 * 119.99851 * 208.57870 * 8 7 6 11 11 C 1.47213 * 126.70444 * 356.62286 * 10 8 7 12 12 C 1.53773 * 106.38015 * 148.69664 * 11 10 8 13 13 H 1.09002 * 112.39043 * 256.84904 * 12 11 10 14 14 C 1.54324 * 109.06257 * 132.42663 * 12 11 10 15 15 C 1.55200 * 104.03224 * 222.13049 * 14 12 11 16 16 C 1.55052 * 102.04172 * 39.86857 * 15 14 12 17 17 H 1.09003 * 110.53534 * 78.81698 * 16 15 14 18 18 N 1.46506 * 110.53190 * 201.44051 * 16 15 14 19 19 C 1.36936 * 119.99900 * 271.63653 * 18 16 15 20 20 H 1.07998 * 120.00318 * 0.27323 * 19 18 16 21 21 C 1.38809 * 119.99629 * 180.02562 * 19 18 16 22 22 N 1.31620 * 120.00636 * 359.97438 * 21 19 18 23 23 Si 1.86812 * 119.99813 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46920 * 59.99895 * 23 21 19 25 25 H 1.48494 * 109.46845 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46836 * 299.99799 * 23 21 19 27 27 C 1.54318 * 104.06899 * 320.12443 * 16 15 14 28 28 H 1.08998 * 111.69415 * 262.72340 * 27 16 15 29 29 C 1.47212 * 126.69826 * 176.60293 * 10 8 7 30 30 C 1.39739 * 119.82622 * 0.27262 * 7 6 5 31 31 C 1.37706 * 119.90661 * 359.47203 * 30 7 6 32 32 H 1.08996 * 109.47461 * 299.99842 * 1 2 3 33 33 H 1.08994 * 109.47373 * 60.00044 * 1 2 3 34 34 H 1.09008 * 109.47045 * 179.97438 * 1 2 3 35 35 H 1.08997 * 109.46978 * 239.99565 * 2 1 3 36 36 H 1.09007 * 109.46937 * 120.00350 * 2 1 3 37 37 H 1.08008 * 119.95961 * 0.02562 * 5 4 3 38 38 H 1.07998 * 120.04923 * 179.97438 * 6 5 4 39 39 H 1.09005 * 110.06789 * 29.46917 * 11 10 8 40 40 H 1.08994 * 110.12128 * 267.95637 * 11 10 8 41 41 H 1.08997 * 110.53139 * 340.64814 * 14 12 11 42 42 H 1.09001 * 110.53107 * 103.27759 * 14 12 11 43 43 H 1.08996 * 110.83401 * 281.73324 * 15 14 12 44 44 H 1.08994 * 111.03063 * 158.09257 * 15 14 12 45 45 H 0.96996 * 120.00278 * 91.63988 * 18 16 15 46 46 H 0.96998 * 120.00050 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.07736 * 92.07386 * 29 10 8 48 48 H 1.08997 * 110.07710 * 330.52686 * 29 10 8 49 49 H 1.07993 * 120.04569 * 179.72425 * 30 7 6 50 50 H 1.08001 * 119.95217 * 180.25290 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3518 1.5251 0.0005 5 6 3.8810 2.8103 0.0011 6 6 5.2456 2.9950 0.0011 7 6 6.0985 1.8881 0.0011 8 6 7.5618 2.0816 0.0006 9 8 8.0434 3.0780 0.5039 10 7 8.3640 1.1535 -0.5579 11 6 7.9482 -0.1319 -1.1426 12 6 8.9426 -0.4346 -2.2759 13 1 8.5217 -0.2361 -3.2616 14 6 9.4261 -1.8944 -2.1455 15 6 10.9497 -1.8129 -2.4292 16 6 11.3458 -0.5054 -1.6959 17 1 11.4388 -0.6812 -0.6242 18 7 12.5976 0.0288 -2.2381 19 6 13.7976 -0.3786 -1.7191 20 1 13.8213 -1.0970 -0.9131 21 6 14.9836 0.1280 -2.2325 22 7 14.9549 0.9995 -3.2184 23 14 16.6206 -0.4283 -1.5250 24 1 16.7571 -1.8978 -1.6895 25 1 17.7273 0.2545 -2.2420 26 1 16.6785 -0.0842 -0.0816 27 6 10.1754 0.4573 -1.9871 28 1 10.3984 1.1217 -2.8219 29 6 9.8271 1.2276 -0.7024 30 6 5.5624 0.5977 -0.0047 31 6 4.1967 0.4215 0.0006 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8900 37 1 3.2211 3.6653 0.0015 38 1 5.6561 3.9939 0.0012 39 1 6.9376 -0.0511 -1.5432 40 1 7.9896 -0.9178 -0.3886 41 1 9.2466 -2.2680 -1.1374 42 1 8.9307 -2.5283 -2.8810 43 1 11.1410 -1.7319 -3.4992 44 1 11.4729 -2.6701 -2.0057 45 1 12.5765 0.6711 -2.9646 46 1 15.7838 1.3532 -3.5773 47 1 10.3120 0.7624 0.1558 48 1 10.1420 2.2672 -0.7926 49 1 6.2183 -0.2603 -0.0092 50 1 3.7816 -0.5756 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026410335.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:36 Heat of formation + Delta-G solvation = -27.788610 kcal Electronic energy + Delta-G solvation = -29758.356231 eV Core-core repulsion = 25751.041836 eV Total energy + Delta-G solvation = -4007.314395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.90696 -40.12314 -38.65745 -37.28432 -35.27505 -33.40380 -32.54582 -31.42205 -31.02792 -30.55230 -28.94136 -28.49507 -25.28049 -24.67205 -24.27841 -22.93856 -22.62979 -21.95611 -20.38432 -19.56029 -19.19787 -18.56535 -17.55178 -17.00080 -16.58886 -16.39261 -16.12527 -15.38189 -15.14856 -14.94635 -14.45603 -14.26603 -13.99922 -13.88520 -13.74435 -13.71662 -13.28726 -13.11017 -13.02391 -12.84397 -12.62832 -12.31353 -12.26161 -12.14738 -11.86032 -11.65563 -11.22797 -11.18212 -11.09586 -10.87088 -10.77141 -10.66209 -10.40494 -10.29556 -10.23292 -9.96919 -9.81858 -9.65499 -9.38591 -8.87595 -8.70160 -8.49517 -6.95463 -5.76988 -3.05903 0.71843 0.99972 2.70958 2.72781 2.99766 3.44164 3.48883 3.49660 3.56258 4.29630 4.37283 4.41307 4.45271 4.53322 4.57085 4.62191 4.73037 4.81392 4.86134 4.91126 4.99585 5.12174 5.26293 5.27627 5.32546 5.38424 5.42546 5.52380 5.54600 5.59540 5.62912 5.74851 5.77437 5.86083 5.90822 5.92950 5.97741 6.04538 6.08931 6.20235 6.24254 6.30461 6.34694 6.44072 6.53393 6.63971 6.77790 6.96435 7.02410 7.57707 7.69550 8.17902 8.41413 9.52606 10.09836 10.43870 11.45399 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.002065 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.524314 B =13553.924226 C =14343.829880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.151 3.849 5 C -0.160 4.160 6 C -0.023 4.023 7 C -0.164 4.164 8 C 0.575 3.425 9 O -0.539 6.539 10 N -0.611 5.611 11 C 0.096 3.904 12 C -0.101 4.101 13 H 0.087 0.913 14 C -0.117 4.117 15 C -0.142 4.142 16 C 0.184 3.816 17 H 0.057 0.943 18 N -0.720 5.720 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.106 4.106 28 H 0.090 0.910 29 C 0.116 3.884 30 C -0.056 4.056 31 C -0.218 4.218 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.142 0.858 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.407 -4.584 4.518 30.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.227 6.227 4 C 0.105 3.895 5 C -0.179 4.179 6 C -0.041 4.041 7 C -0.167 4.167 8 C 0.365 3.635 9 O -0.418 6.418 10 N -0.344 5.344 11 C -0.027 4.027 12 C -0.121 4.121 13 H 0.105 0.895 14 C -0.155 4.155 15 C -0.183 4.183 16 C 0.073 3.927 17 H 0.075 0.925 18 N -0.360 5.360 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.126 4.126 28 H 0.108 0.892 29 C -0.005 4.005 30 C -0.074 4.074 31 C -0.236 4.236 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.218 0.782 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.159 0.841 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -29.186 -3.887 4.935 29.855 hybrid contribution 1.031 -0.453 0.026 1.126 sum -28.155 -4.340 4.960 28.917 Atomic orbital electron populations 1.21784 0.92557 1.03017 1.03624 1.22853 0.96048 0.81700 1.01705 1.86043 1.19011 1.29710 1.87956 1.19244 0.82289 0.94198 0.93813 1.20385 0.94925 0.94973 1.07586 1.21043 0.91521 0.98931 0.92647 1.19806 0.93049 0.94214 1.09616 1.17825 0.85678 0.81943 0.78057 1.90801 1.76332 1.28890 1.45745 1.48523 1.08599 1.18838 1.58400 1.22677 0.99145 0.85363 0.95516 1.22594 0.95081 0.96463 0.97926 0.89512 1.22526 0.97743 0.94230 1.01019 1.23320 0.92810 1.00570 1.01629 1.21243 0.85161 0.90039 0.96260 0.92545 1.42429 0.99905 1.51756 1.41922 1.19180 0.84019 1.20070 1.13929 0.91242 1.24739 0.97726 0.99579 0.98770 1.69645 1.26514 1.33657 1.28193 0.86287 0.83797 0.77898 0.78312 1.21314 1.21719 1.21255 1.22908 0.95374 0.97319 0.97008 0.89159 1.22197 0.78362 1.02151 0.97834 1.21592 0.94853 0.96866 0.94115 1.21182 0.93979 0.98264 1.10215 0.91453 0.91433 0.90221 0.91717 0.91763 0.84514 0.84132 0.90167 0.90885 0.91760 0.92164 0.91535 0.92107 0.78168 0.93446 0.90857 0.90206 0.84061 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 10.28 37.16 0.38 -0.22 16 2 C 0.05 0.28 5.45 37.16 0.20 0.48 16 3 O -0.31 -2.70 10.12 -18.84 -0.19 -2.89 16 4 C 0.15 1.41 6.69 -39.02 -0.26 1.15 16 5 C -0.16 -1.55 9.97 -39.50 -0.39 -1.94 16 6 C -0.02 -0.25 9.58 -39.22 -0.38 -0.63 16 7 C -0.16 -2.00 5.69 -104.96 -0.60 -2.60 16 8 C 0.58 8.81 7.64 -12.44 -0.10 8.71 16 9 O -0.54 -10.25 16.93 5.29 0.09 -10.16 16 10 N -0.61 -8.62 3.32 -172.78 -0.57 -9.20 16 11 C 0.10 1.04 4.69 -3.25 -0.02 1.02 16 12 C -0.10 -1.23 3.91 -88.53 -0.35 -1.58 16 13 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.12 -1.39 6.35 -24.87 -0.16 -1.55 16 15 C -0.14 -2.31 6.61 -24.48 -0.16 -2.48 16 16 C 0.18 3.42 3.02 -66.15 -0.20 3.22 16 17 H 0.06 1.08 7.14 -51.93 -0.37 0.71 16 18 N -0.72 -17.41 5.22 -51.71 -0.27 -17.68 16 19 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 23 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C -0.11 -1.67 3.60 -88.53 -0.32 -1.99 16 28 H 0.09 1.54 7.79 -51.93 -0.40 1.14 16 29 C 0.12 1.87 6.53 -3.25 -0.02 1.85 16 30 C -0.06 -0.54 7.87 -39.22 -0.31 -0.85 16 31 C -0.22 -1.84 9.01 -39.50 -0.36 -2.20 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.18 8.14 -51.92 -0.42 -0.24 16 35 H 0.06 0.29 7.65 -51.93 -0.40 -0.10 16 36 H 0.06 0.29 7.65 -51.92 -0.40 -0.10 16 37 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.14 1.53 7.90 -52.49 -0.41 1.12 16 39 H 0.08 0.74 5.70 -51.93 -0.30 0.44 16 40 H 0.07 0.69 6.66 -51.93 -0.35 0.35 16 41 H 0.06 0.70 7.19 -51.93 -0.37 0.32 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.38 9.95 7.59 -40.82 -0.31 9.64 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.07 1.21 7.13 -51.93 -0.37 0.84 16 48 H 0.08 1.43 7.96 -51.93 -0.41 1.01 16 49 H 0.14 1.16 4.88 -52.49 -0.26 0.91 16 50 H 0.13 0.79 6.28 -52.49 -0.33 0.46 16 LS Contribution 394.62 15.07 5.95 5.95 Total: -1.00 -32.84 394.62 -10.17 -43.01 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -7.61 Total: 7.62 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.27 Total: -6.72 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.12 Total: -54.07 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.10 Total: -13.05 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.84 -10.17 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026410335.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.225 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds