Wall clock time and date at job start Wed Apr 1 2020 03:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47176 * 2 1 4 4 C 1.35713 * 117.00212 * 179.97438 * 3 2 1 5 5 C 1.38986 * 119.91204 * 180.02562 * 4 3 2 6 6 C 1.37708 * 120.09038 * 180.02562 * 5 4 3 7 7 C 1.39732 * 119.90733 * 359.97438 * 6 5 4 8 8 C 1.47605 * 120.08599 * 179.97438 * 7 6 5 9 9 O 1.21582 * 119.99819 * 28.58228 * 8 7 6 10 10 N 1.34780 * 119.99851 * 208.57870 * 8 7 6 11 11 C 1.47213 * 126.70444 * 356.62286 * 10 8 7 12 12 C 1.53773 * 106.38015 * 148.69664 * 11 10 8 13 13 H 1.09002 * 112.39043 * 256.84904 * 12 11 10 14 14 C 1.54324 * 109.06257 * 132.42663 * 12 11 10 15 15 C 1.55200 * 104.03224 * 222.13049 * 14 12 11 16 16 C 1.55052 * 102.04172 * 39.86857 * 15 14 12 17 17 H 1.09003 * 110.53534 * 78.81698 * 16 15 14 18 18 N 1.46506 * 110.53190 * 201.44051 * 16 15 14 19 19 C 1.36936 * 119.99900 * 271.63653 * 18 16 15 20 20 H 1.07998 * 120.00318 * 0.27323 * 19 18 16 21 21 C 1.38809 * 119.99629 * 180.02562 * 19 18 16 22 22 N 1.31620 * 120.00636 * 359.97438 * 21 19 18 23 23 Si 1.86812 * 119.99813 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46920 * 59.99895 * 23 21 19 25 25 H 1.48494 * 109.46845 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46836 * 299.99799 * 23 21 19 27 27 C 1.54318 * 104.06899 * 320.12443 * 16 15 14 28 28 H 1.08998 * 111.69415 * 262.72340 * 27 16 15 29 29 C 1.47212 * 126.69826 * 176.60293 * 10 8 7 30 30 C 1.39739 * 119.82622 * 0.27262 * 7 6 5 31 31 C 1.37706 * 119.90661 * 359.47203 * 30 7 6 32 32 H 1.08996 * 109.47461 * 299.99842 * 1 2 3 33 33 H 1.08994 * 109.47373 * 60.00044 * 1 2 3 34 34 H 1.09008 * 109.47045 * 179.97438 * 1 2 3 35 35 H 1.08997 * 109.46978 * 239.99565 * 2 1 3 36 36 H 1.09007 * 109.46937 * 120.00350 * 2 1 3 37 37 H 1.08008 * 119.95961 * 0.02562 * 5 4 3 38 38 H 1.07998 * 120.04923 * 179.97438 * 6 5 4 39 39 H 1.09005 * 110.06789 * 29.46917 * 11 10 8 40 40 H 1.08994 * 110.12128 * 267.95637 * 11 10 8 41 41 H 1.08997 * 110.53139 * 340.64814 * 14 12 11 42 42 H 1.09001 * 110.53107 * 103.27759 * 14 12 11 43 43 H 1.08996 * 110.83401 * 281.73324 * 15 14 12 44 44 H 1.08994 * 111.03063 * 158.09257 * 15 14 12 45 45 H 0.96996 * 120.00278 * 91.63988 * 18 16 15 46 46 H 0.96998 * 120.00050 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.07736 * 92.07386 * 29 10 8 48 48 H 1.08997 * 110.07710 * 330.52686 * 29 10 8 49 49 H 1.07993 * 120.04569 * 179.72425 * 30 7 6 50 50 H 1.08001 * 119.95217 * 180.25290 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3518 1.5251 0.0005 5 6 3.8810 2.8103 0.0011 6 6 5.2456 2.9950 0.0011 7 6 6.0985 1.8881 0.0011 8 6 7.5618 2.0816 0.0006 9 8 8.0434 3.0780 0.5039 10 7 8.3640 1.1535 -0.5579 11 6 7.9482 -0.1319 -1.1426 12 6 8.9426 -0.4346 -2.2759 13 1 8.5217 -0.2361 -3.2616 14 6 9.4261 -1.8944 -2.1455 15 6 10.9497 -1.8129 -2.4292 16 6 11.3458 -0.5054 -1.6959 17 1 11.4388 -0.6812 -0.6242 18 7 12.5976 0.0288 -2.2381 19 6 13.7976 -0.3786 -1.7191 20 1 13.8213 -1.0970 -0.9131 21 6 14.9836 0.1280 -2.2325 22 7 14.9549 0.9995 -3.2184 23 14 16.6206 -0.4283 -1.5250 24 1 16.7571 -1.8978 -1.6895 25 1 17.7273 0.2545 -2.2420 26 1 16.6785 -0.0842 -0.0816 27 6 10.1754 0.4573 -1.9871 28 1 10.3984 1.1217 -2.8219 29 6 9.8271 1.2276 -0.7024 30 6 5.5624 0.5977 -0.0047 31 6 4.1967 0.4215 0.0006 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8900 37 1 3.2211 3.6653 0.0015 38 1 5.6561 3.9939 0.0012 39 1 6.9376 -0.0511 -1.5432 40 1 7.9896 -0.9178 -0.3886 41 1 9.2466 -2.2680 -1.1374 42 1 8.9307 -2.5283 -2.8810 43 1 11.1410 -1.7319 -3.4992 44 1 11.4729 -2.6701 -2.0057 45 1 12.5765 0.6711 -2.9646 46 1 15.7838 1.3532 -3.5773 47 1 10.3120 0.7624 0.1558 48 1 10.1420 2.2672 -0.7926 49 1 6.2183 -0.2603 -0.0092 50 1 3.7816 -0.5756 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026410335.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:35 Heat of formation + Delta-G solvation = -47.802069 kcal Electronic energy + Delta-G solvation = -29759.224080 eV Core-core repulsion = 25751.041836 eV Total energy + Delta-G solvation = -4008.182244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.87543 -40.97650 -39.77285 -38.12877 -36.75199 -35.06931 -33.09804 -32.73743 -32.08094 -31.52102 -30.11598 -29.74811 -26.79268 -25.63384 -25.01588 -24.57047 -23.50091 -22.64865 -21.61312 -20.65550 -20.45710 -19.22485 -19.11944 -18.41626 -17.39198 -17.24761 -17.05988 -16.69837 -16.32135 -15.95451 -15.72824 -15.59189 -15.18731 -14.91172 -14.68481 -14.50587 -14.37926 -14.29379 -14.01498 -13.80072 -13.61296 -13.31364 -13.18804 -13.07125 -12.89964 -12.85684 -12.64839 -12.55639 -12.34873 -12.11328 -12.00308 -11.78560 -11.66569 -11.63746 -11.52797 -11.44798 -11.36662 -11.02635 -10.82940 -10.12522 -9.82492 -9.27574 -8.95788 -7.92966 -5.20577 -0.10674 0.28474 1.46707 1.49552 1.55337 1.67948 1.90123 2.18016 2.56944 2.72975 3.29388 3.40852 3.47178 3.66385 3.73469 3.81684 3.84598 4.05619 4.11011 4.13291 4.17696 4.21693 4.33373 4.38263 4.42174 4.46785 4.47431 4.51912 4.61217 4.65598 4.68849 4.83601 4.86791 4.90780 4.94306 4.98519 5.05045 5.06252 5.09544 5.15435 5.18199 5.27647 5.30570 5.37329 5.41341 5.48789 5.52940 5.61180 5.64152 6.29362 6.36826 6.47548 7.02385 7.35084 8.13053 8.34367 9.30395 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.002065 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.524314 B =13553.924226 C =14343.829880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 O -0.326 6.326 4 C 0.153 3.847 5 C -0.165 4.165 6 C -0.034 4.034 7 C -0.185 4.185 8 C 0.570 3.430 9 O -0.592 6.592 10 N -0.609 5.609 11 C 0.095 3.905 12 C -0.091 4.091 13 H 0.101 0.899 14 C -0.100 4.100 15 C -0.138 4.138 16 C 0.175 3.825 17 H 0.051 0.949 18 N -0.735 5.735 19 C -0.236 4.236 20 H 0.076 0.924 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.970 3.030 24 H -0.276 1.276 25 H -0.298 1.298 26 H -0.281 1.281 27 C -0.101 4.101 28 H 0.070 0.930 29 C 0.120 3.880 30 C -0.048 4.048 31 C -0.209 4.209 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.148 0.852 38 H 0.130 0.870 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.371 0.629 46 H 0.249 0.751 47 H 0.067 0.933 48 H 0.047 0.953 49 H 0.162 0.838 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.629 -7.935 5.010 33.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 O -0.240 6.240 4 C 0.106 3.894 5 C -0.184 4.184 6 C -0.053 4.053 7 C -0.189 4.189 8 C 0.362 3.638 9 O -0.474 6.474 10 N -0.340 5.340 11 C -0.026 4.026 12 C -0.111 4.111 13 H 0.120 0.880 14 C -0.138 4.138 15 C -0.179 4.179 16 C 0.066 3.934 17 H 0.069 0.931 18 N -0.374 5.374 19 C -0.368 4.368 20 H 0.094 0.906 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.799 3.201 24 H -0.202 1.202 25 H -0.225 1.225 26 H -0.207 1.207 27 C -0.121 4.121 28 H 0.088 0.912 29 C -0.003 4.003 30 C -0.067 4.067 31 C -0.227 4.227 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.166 0.834 38 H 0.147 0.853 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.203 0.797 46 H 0.058 0.942 47 H 0.085 0.915 48 H 0.066 0.934 49 H 0.179 0.821 50 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -32.474 -7.311 5.441 33.729 hybrid contribution 1.874 0.576 -0.093 1.963 sum -30.601 -6.735 5.348 31.786 Atomic orbital electron populations 1.21821 0.91747 1.04212 1.03116 1.23184 0.96794 0.80344 1.02999 1.86052 1.18411 1.31959 1.87534 1.19387 0.83006 0.94262 0.92759 1.20490 0.94312 0.96124 1.07467 1.21024 0.92284 0.98505 0.93452 1.19642 0.90805 0.95900 1.12519 1.18423 0.87094 0.81171 0.77121 1.90762 1.77460 1.31057 1.48171 1.48554 1.07393 1.20019 1.58072 1.22959 0.99913 0.84131 0.95572 1.22606 0.93342 0.95752 0.99376 0.88033 1.22479 0.93850 0.94276 1.03225 1.23138 0.96506 0.98278 0.99961 1.21520 0.83967 0.91971 0.95947 0.93107 1.42646 1.01182 1.51863 1.41728 1.19581 0.85211 1.18901 1.13113 0.90610 1.25530 1.01138 1.00541 0.99795 1.69810 1.26682 1.35587 1.30076 0.85265 0.79590 0.77741 0.77514 1.20197 1.22451 1.20707 1.22726 0.96240 0.97133 0.96008 0.91167 1.21969 0.80227 1.00227 0.97842 1.21749 0.95726 0.96019 0.93161 1.21486 0.93169 0.99473 1.08587 0.92011 0.91936 0.88164 0.90255 0.90474 0.83434 0.85251 0.87398 0.88203 0.89633 0.89179 0.93212 0.92646 0.79723 0.94212 0.91509 0.93381 0.82067 0.81624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 71.98 0.74 -0.02 16 2 C 0.04 0.29 5.45 71.98 0.39 0.68 16 3 O -0.33 -4.67 10.12 -90.34 -0.91 -5.58 16 4 C 0.15 2.43 6.69 22.63 0.15 2.58 16 5 C -0.17 -3.00 9.97 22.32 0.22 -2.78 16 6 C -0.03 -0.75 9.58 22.51 0.22 -0.53 16 7 C -0.19 -4.34 5.69 -20.08 -0.11 -4.45 16 8 C 0.57 17.65 7.64 86.72 0.66 18.31 16 9 O -0.59 -23.85 16.93 -3.97 -0.07 -23.92 16 10 N -0.61 -16.75 3.32 -818.83 -2.72 -19.47 16 11 C 0.10 1.71 4.69 86.50 0.41 2.12 16 12 C -0.09 -1.95 3.91 -9.44 -0.04 -1.98 16 13 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 14 C -0.10 -1.97 6.35 31.80 0.20 -1.77 16 15 C -0.14 -4.29 6.61 32.05 0.21 -4.08 16 16 C 0.17 6.53 3.02 46.14 0.14 6.67 16 17 H 0.05 1.95 7.14 -2.39 -0.02 1.94 16 18 N -0.74 -36.70 5.22 -317.50 -1.66 -38.36 16 19 C -0.24 -13.06 9.97 84.03 0.84 -12.22 16 20 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 21 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 22 N -0.97 -60.20 13.06 21.65 0.28 -59.91 16 23 Si 0.97 46.66 29.55 68.60 2.03 48.68 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 27 C -0.10 -3.19 3.60 -9.44 -0.03 -3.22 16 28 H 0.07 2.51 7.79 -2.39 -0.02 2.49 16 29 C 0.12 3.99 6.53 86.51 0.56 4.56 16 30 C -0.05 -0.77 7.87 22.51 0.18 -0.59 16 31 C -0.21 -2.65 9.01 22.33 0.20 -2.45 16 32 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.10 0.10 8.14 -2.38 -0.02 0.08 16 35 H 0.08 0.35 7.65 -2.39 -0.02 0.33 16 36 H 0.08 0.37 7.65 -2.38 -0.02 0.35 16 37 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 38 H 0.13 3.05 7.90 -2.91 -0.02 3.02 16 39 H 0.11 1.43 5.70 -2.38 -0.01 1.42 16 40 H 0.10 1.34 6.66 -2.39 -0.02 1.33 16 41 H 0.09 1.38 7.19 -2.39 -0.02 1.37 16 42 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.37 20.18 7.59 -92.71 -0.70 19.48 16 46 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.07 2.28 7.13 -2.39 -0.02 2.26 16 48 H 0.05 1.87 7.96 -2.39 -0.02 1.85 16 49 H 0.16 1.83 4.88 -2.91 -0.01 1.82 16 50 H 0.17 0.99 6.28 -2.91 -0.02 0.98 16 Total: -1.00 -75.99 394.62 2.61 -73.38 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.25 Total: 28.42 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.41 Total: -3.23 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -4.09 Total: -117.74 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.98 Total: -29.50 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -75.99 2.61 -73.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026410335.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.575 kcal (2) G-P(sol) polarization free energy of solvation -75.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds