Wall clock time and date at job start Wed Apr 1 2020 03:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.47374 * 2 1 4 4 C 1.35712 * 117.00250 * 179.97438 * 3 2 1 5 5 C 1.38997 * 119.90874 * 180.02562 * 4 3 2 6 6 C 1.37701 * 120.08590 * 180.02562 * 5 4 3 7 7 C 1.39738 * 119.91293 * 0.27029 * 6 5 4 8 8 C 1.47602 * 120.09149 * 179.72553 * 7 6 5 9 9 O 1.21580 * 119.99839 * 213.68921 * 8 7 6 10 10 N 1.34773 * 119.99703 * 33.68364 * 8 7 6 11 11 C 1.49218 * 126.06210 * 5.45698 * 10 8 7 12 12 C 1.50350 * 104.86317 * 172.89975 * 11 10 8 13 13 H 1.09006 * 110.05090 * 278.92782 * 12 11 10 14 14 C 1.51003 * 125.54150 * 143.74509 * 12 11 10 15 15 C 1.55926 * 101.81614 * 203.82960 * 14 12 11 16 16 C 1.55943 * 105.58390 * 25.61461 * 15 14 12 17 17 H 1.08998 * 110.60920 * 248.45810 * 16 15 14 18 18 N 1.46509 * 110.49259 * 125.85402 * 16 15 14 19 19 C 1.36933 * 120.00140 * 90.26144 * 18 16 15 20 20 H 1.08004 * 119.99847 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00099 * 179.97438 * 19 18 16 22 22 N 1.31620 * 120.00211 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00197 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46814 * 90.00544 * 23 21 19 25 25 H 1.48498 * 109.47009 * 210.00693 * 23 21 19 26 26 H 1.48498 * 109.46971 * 330.00676 * 23 21 19 27 27 C 1.50288 * 104.15871 * 7.18509 * 16 15 14 28 28 H 1.09000 * 109.48037 * 80.27163 * 27 16 15 29 29 C 1.49700 * 126.05716 * 185.13615 * 10 8 7 30 30 C 1.39733 * 119.81931 * 359.44893 * 7 6 5 31 31 C 1.37706 * 119.91468 * 0.53508 * 30 7 6 32 32 H 1.09002 * 109.47165 * 59.99692 * 1 2 3 33 33 H 1.09002 * 109.47251 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47132 * 299.99857 * 1 2 3 35 35 H 1.09003 * 109.47132 * 240.00143 * 2 1 3 36 36 H 1.09002 * 109.47165 * 120.00308 * 2 1 3 37 37 H 1.07998 * 119.96053 * 359.97146 * 5 4 3 38 38 H 1.08002 * 120.04780 * 180.02562 * 6 5 4 39 39 H 1.09003 * 110.35537 * 291.73904 * 11 10 8 40 40 H 1.09000 * 110.36236 * 53.94083 * 11 10 8 41 41 H 1.08997 * 111.00033 * 322.07835 * 14 12 11 42 42 H 1.09004 * 111.00175 * 85.92260 * 14 12 11 43 43 H 1.09004 * 110.58798 * 266.44529 * 15 14 12 44 44 H 1.08994 * 110.04839 * 144.50464 * 15 14 12 45 45 H 0.96997 * 119.99660 * 270.26753 * 18 16 15 46 46 H 0.96998 * 120.00726 * 179.97438 * 22 21 19 47 47 H 1.09000 * 110.84888 * 273.09507 * 29 10 8 48 48 H 1.08998 * 110.84299 * 36.71041 * 29 10 8 49 49 H 1.08003 * 120.04406 * 180.27975 * 30 7 6 50 50 H 1.07998 * 119.95798 * 179.74692 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5251 0.0005 5 6 3.8810 2.8104 0.0011 6 6 5.2455 2.9950 0.0011 7 6 6.0985 1.8882 -0.0051 8 6 7.5618 2.0815 -0.0113 9 8 8.2766 1.2939 -0.6003 10 7 8.1054 3.1313 0.6360 11 6 7.3736 4.1104 1.4917 12 6 8.4483 4.9601 2.1111 13 1 8.8825 4.4468 2.9691 14 6 8.3445 6.4403 2.3913 15 6 9.8441 6.8672 2.4118 16 6 10.5894 5.8221 1.5264 17 1 11.2413 5.1973 2.1370 18 7 11.3606 6.4949 0.4781 19 6 12.6600 6.8591 0.7108 20 1 13.1164 6.6500 1.6671 21 6 13.3908 7.4961 -0.2826 22 7 12.8348 7.7504 -1.4482 23 14 15.1636 7.9923 0.0346 24 1 16.0666 6.8813 -0.3594 25 1 15.4893 9.2017 -0.7632 26 1 15.3439 8.2885 1.4786 27 6 9.4867 4.9989 0.9222 28 1 9.0588 5.5318 0.0730 29 6 9.5517 3.5177 0.6292 30 6 5.5624 0.5978 0.0003 31 6 4.1967 0.4215 0.0006 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.2211 3.6653 0.0007 38 1 5.6561 3.9939 0.0020 39 1 6.7091 4.7236 0.8830 40 1 6.8071 3.5900 2.2640 41 1 7.8029 6.9514 1.5954 42 1 7.8777 6.6229 3.3592 43 1 10.2349 6.8453 3.4291 44 1 9.9542 7.8655 1.9885 45 1 10.9508 6.6824 -0.3808 46 1 13.3453 8.1959 -2.1423 47 1 10.0981 2.9891 1.4103 48 1 9.9973 3.3354 -0.3487 49 1 6.2184 -0.2603 0.0000 50 1 3.7816 -0.5756 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026410336.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:38 Heat of formation + Delta-G solvation = -12.823448 kcal Electronic energy + Delta-G solvation = -29656.929030 eV Core-core repulsion = 25650.263573 eV Total energy + Delta-G solvation = -4006.665457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.89395 -40.24767 -38.81777 -37.26905 -35.35566 -33.41715 -32.47748 -31.47251 -30.91304 -30.51092 -28.89274 -28.51408 -25.48998 -24.70465 -23.94963 -23.09591 -22.44649 -22.00672 -20.23398 -19.71863 -19.11381 -18.59680 -17.37425 -16.95842 -16.58556 -16.52199 -16.10174 -15.39880 -15.16591 -14.76554 -14.63720 -14.07620 -13.97570 -13.84389 -13.81835 -13.71378 -13.59010 -13.14462 -12.91696 -12.87184 -12.61237 -12.33372 -12.21232 -12.10007 -11.76424 -11.55578 -11.42274 -11.18389 -11.13708 -10.99211 -10.79978 -10.75298 -10.42940 -10.14848 -10.12933 -9.88566 -9.74820 -9.56713 -9.37031 -8.91469 -8.68394 -8.46693 -6.97226 -5.77231 -3.06409 0.75415 1.03514 2.72834 2.74153 2.89546 3.43846 3.49064 3.50540 3.57151 4.10937 4.36244 4.42733 4.44038 4.50629 4.58173 4.61832 4.73777 4.84843 4.91515 4.96481 5.09283 5.16282 5.22267 5.28991 5.32911 5.39119 5.48848 5.53693 5.55389 5.57317 5.67470 5.74490 5.79366 5.87371 5.93278 5.95893 5.99514 6.04011 6.10627 6.14650 6.25107 6.32714 6.34598 6.38119 6.50264 6.63610 6.78511 6.98896 7.05109 7.54090 7.70326 8.18225 8.40878 9.52288 10.08999 10.43355 11.45145 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024434 B = 0.001999 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.667773 B =14001.006556 C =14471.694025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.150 3.850 5 C -0.158 4.158 6 C -0.052 4.052 7 C -0.162 4.162 8 C 0.576 3.424 9 O -0.540 6.540 10 N -0.620 5.620 11 C 0.119 3.881 12 C -0.131 4.131 13 H 0.082 0.918 14 C -0.096 4.096 15 C -0.144 4.144 16 C 0.195 3.805 17 H 0.056 0.944 18 N -0.720 5.720 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.118 4.118 28 H 0.082 0.918 29 C 0.130 3.870 30 C -0.024 4.024 31 C -0.218 4.218 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.135 0.865 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.107 -13.432 7.031 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.227 6.227 4 C 0.103 3.897 5 C -0.177 4.177 6 C -0.070 4.070 7 C -0.166 4.166 8 C 0.365 3.635 9 O -0.419 6.419 10 N -0.355 5.355 11 C -0.003 4.003 12 C -0.151 4.151 13 H 0.101 0.899 14 C -0.134 4.134 15 C -0.185 4.185 16 C 0.084 3.916 17 H 0.074 0.926 18 N -0.360 5.360 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.138 4.138 28 H 0.101 0.899 29 C 0.010 3.990 30 C -0.043 4.043 31 C -0.236 4.236 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.152 0.848 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.721 -13.754 6.710 29.075 hybrid contribution 0.888 0.161 -0.172 0.918 sum -23.834 -13.594 6.539 28.206 Atomic orbital electron populations 1.21783 0.92556 1.02983 1.03645 1.22846 0.96035 0.81744 1.01677 1.86042 1.19019 1.29657 1.87989 1.19239 0.82264 0.94198 0.93951 1.20378 0.94986 0.94928 1.07384 1.21504 0.92136 0.99130 0.94252 1.19818 0.92953 0.94313 1.09478 1.17833 0.87251 0.79903 0.78492 1.90796 1.62708 1.43626 1.44723 1.49765 1.09757 1.27497 1.48458 1.21487 0.94595 0.90765 0.93449 1.22203 0.96849 0.96912 0.99089 0.89925 1.21661 0.98317 0.92571 1.00887 1.23722 0.92743 1.01799 1.00246 1.20109 0.90130 0.90968 0.90409 0.92572 1.42491 1.11058 1.69316 1.13107 1.19248 0.88297 1.31238 0.98434 0.91127 1.24743 0.98360 1.01631 0.96100 1.69656 1.36417 1.47472 1.04450 0.86210 0.85097 0.77772 0.77223 1.21723 1.21824 1.20769 1.22583 0.98582 0.94546 0.98132 0.89945 1.21567 0.80169 0.94397 1.02899 1.20987 0.94234 0.96346 0.92739 1.21176 0.93918 0.98264 1.10277 0.91417 0.90262 0.91435 0.91768 0.91789 0.84546 0.83904 0.90949 0.90950 0.91556 0.92208 0.92602 0.90751 0.78167 0.93497 0.91032 0.89822 0.84761 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 10.28 37.15 0.38 -0.25 16 2 C 0.05 0.30 5.45 37.15 0.20 0.50 16 3 O -0.31 -2.78 10.12 -18.84 -0.19 -2.97 16 4 C 0.15 1.44 6.70 -39.02 -0.26 1.18 16 5 C -0.16 -1.51 9.97 -39.50 -0.39 -1.90 16 6 C -0.05 -0.54 8.56 -39.22 -0.34 -0.88 16 7 C -0.16 -2.02 5.61 -104.96 -0.59 -2.61 16 8 C 0.58 8.88 7.55 -12.44 -0.09 8.79 16 9 O -0.54 -10.32 17.16 5.30 0.09 -10.23 16 10 N -0.62 -8.78 3.42 -172.63 -0.59 -9.37 16 11 C 0.12 1.31 5.24 -3.85 -0.02 1.29 16 12 C -0.13 -1.60 2.79 -90.26 -0.25 -1.85 16 13 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 14 C -0.10 -1.18 6.66 -26.17 -0.17 -1.36 16 15 C -0.14 -2.31 6.73 -23.59 -0.16 -2.47 16 16 C 0.20 3.62 3.41 -67.70 -0.23 3.39 16 17 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 18 N -0.72 -17.35 5.10 -53.21 -0.27 -17.62 16 19 C -0.24 -6.53 9.96 -15.06 -0.15 -6.68 16 20 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 23 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C -0.12 -1.86 2.43 -90.23 -0.22 -2.08 16 28 H 0.08 1.40 7.89 -51.93 -0.41 0.99 16 29 C 0.13 2.06 6.81 -3.20 -0.02 2.04 16 30 C -0.02 -0.27 9.60 -39.22 -0.38 -0.64 16 31 C -0.22 -2.01 9.01 -39.50 -0.36 -2.36 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.32 7.65 -51.93 -0.40 -0.07 16 36 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 37 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.14 1.33 5.07 -52.49 -0.27 1.06 16 39 H 0.07 0.71 5.75 -51.93 -0.30 0.41 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 1.37 7.98 -51.93 -0.41 0.95 16 45 H 0.38 9.96 7.66 -40.82 -0.31 9.65 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.08 1.50 8.13 -51.93 -0.42 1.08 16 49 H 0.13 1.44 7.98 -52.48 -0.42 1.02 16 50 H 0.13 0.90 6.28 -52.49 -0.33 0.57 16 LS Contribution 399.60 15.07 6.02 6.02 Total: -1.00 -32.66 399.60 -10.24 -42.90 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -7.86 Total: 7.56 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -3.14 Total: -6.33 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.14 Total: -54.18 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.10 Total: -13.20 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.66 -10.24 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026410336.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.081 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds