Wall clock time and date at job start Wed Apr 1 2020 03:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.47374 * 2 1 4 4 C 1.35712 * 117.00250 * 179.97438 * 3 2 1 5 5 C 1.38997 * 119.90874 * 180.02562 * 4 3 2 6 6 C 1.37701 * 120.08590 * 180.02562 * 5 4 3 7 7 C 1.39738 * 119.91293 * 0.27029 * 6 5 4 8 8 C 1.47602 * 120.09149 * 179.72553 * 7 6 5 9 9 O 1.21580 * 119.99839 * 213.68921 * 8 7 6 10 10 N 1.34773 * 119.99703 * 33.68364 * 8 7 6 11 11 C 1.49218 * 126.06210 * 5.45698 * 10 8 7 12 12 C 1.50350 * 104.86317 * 172.89975 * 11 10 8 13 13 H 1.09006 * 110.05090 * 278.92782 * 12 11 10 14 14 C 1.51003 * 125.54150 * 143.74509 * 12 11 10 15 15 C 1.55926 * 101.81614 * 203.82960 * 14 12 11 16 16 C 1.55943 * 105.58390 * 25.61461 * 15 14 12 17 17 H 1.08998 * 110.60920 * 248.45810 * 16 15 14 18 18 N 1.46509 * 110.49259 * 125.85402 * 16 15 14 19 19 C 1.36933 * 120.00140 * 90.26144 * 18 16 15 20 20 H 1.08004 * 119.99847 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00099 * 179.97438 * 19 18 16 22 22 N 1.31620 * 120.00211 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00197 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46814 * 90.00544 * 23 21 19 25 25 H 1.48498 * 109.47009 * 210.00693 * 23 21 19 26 26 H 1.48498 * 109.46971 * 330.00676 * 23 21 19 27 27 C 1.50288 * 104.15871 * 7.18509 * 16 15 14 28 28 H 1.09000 * 109.48037 * 80.27163 * 27 16 15 29 29 C 1.49700 * 126.05716 * 185.13615 * 10 8 7 30 30 C 1.39733 * 119.81931 * 359.44893 * 7 6 5 31 31 C 1.37706 * 119.91468 * 0.53508 * 30 7 6 32 32 H 1.09002 * 109.47165 * 59.99692 * 1 2 3 33 33 H 1.09002 * 109.47251 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47132 * 299.99857 * 1 2 3 35 35 H 1.09003 * 109.47132 * 240.00143 * 2 1 3 36 36 H 1.09002 * 109.47165 * 120.00308 * 2 1 3 37 37 H 1.07998 * 119.96053 * 359.97146 * 5 4 3 38 38 H 1.08002 * 120.04780 * 180.02562 * 6 5 4 39 39 H 1.09003 * 110.35537 * 291.73904 * 11 10 8 40 40 H 1.09000 * 110.36236 * 53.94083 * 11 10 8 41 41 H 1.08997 * 111.00033 * 322.07835 * 14 12 11 42 42 H 1.09004 * 111.00175 * 85.92260 * 14 12 11 43 43 H 1.09004 * 110.58798 * 266.44529 * 15 14 12 44 44 H 1.08994 * 110.04839 * 144.50464 * 15 14 12 45 45 H 0.96997 * 119.99660 * 270.26753 * 18 16 15 46 46 H 0.96998 * 120.00726 * 179.97438 * 22 21 19 47 47 H 1.09000 * 110.84888 * 273.09507 * 29 10 8 48 48 H 1.08998 * 110.84299 * 36.71041 * 29 10 8 49 49 H 1.08003 * 120.04406 * 180.27975 * 30 7 6 50 50 H 1.07998 * 119.95798 * 179.74692 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5251 0.0005 5 6 3.8810 2.8104 0.0011 6 6 5.2455 2.9950 0.0011 7 6 6.0985 1.8882 -0.0051 8 6 7.5618 2.0815 -0.0113 9 8 8.2766 1.2939 -0.6003 10 7 8.1054 3.1313 0.6360 11 6 7.3736 4.1104 1.4917 12 6 8.4483 4.9601 2.1111 13 1 8.8825 4.4468 2.9691 14 6 8.3445 6.4403 2.3913 15 6 9.8441 6.8672 2.4118 16 6 10.5894 5.8221 1.5264 17 1 11.2413 5.1973 2.1370 18 7 11.3606 6.4949 0.4781 19 6 12.6600 6.8591 0.7108 20 1 13.1164 6.6500 1.6671 21 6 13.3908 7.4961 -0.2826 22 7 12.8348 7.7504 -1.4482 23 14 15.1636 7.9923 0.0346 24 1 16.0666 6.8813 -0.3594 25 1 15.4893 9.2017 -0.7632 26 1 15.3439 8.2885 1.4786 27 6 9.4867 4.9989 0.9222 28 1 9.0588 5.5318 0.0730 29 6 9.5517 3.5177 0.6292 30 6 5.5624 0.5978 0.0003 31 6 4.1967 0.4215 0.0006 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.2211 3.6653 0.0007 38 1 5.6561 3.9939 0.0020 39 1 6.7091 4.7236 0.8830 40 1 6.8071 3.5900 2.2640 41 1 7.8029 6.9514 1.5954 42 1 7.8777 6.6229 3.3592 43 1 10.2349 6.8453 3.4291 44 1 9.9542 7.8655 1.9885 45 1 10.9508 6.6824 -0.3808 46 1 13.3453 8.1959 -2.1423 47 1 10.0981 2.9891 1.4103 48 1 9.9973 3.3354 -0.3487 49 1 6.2184 -0.2603 0.0000 50 1 3.7816 -0.5756 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026410336.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:38 Heat of formation + Delta-G solvation = -32.385051 kcal Electronic energy + Delta-G solvation = -29657.777284 eV Core-core repulsion = 25650.263573 eV Total energy + Delta-G solvation = -4007.513712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.93802 -41.10030 -39.91957 -38.12734 -36.82752 -35.11393 -32.99825 -32.67371 -32.29592 -31.37424 -30.07327 -29.74313 -27.03793 -25.44869 -24.86398 -24.81570 -23.41662 -22.72066 -21.41772 -20.75867 -20.43238 -19.29302 -19.11439 -18.21925 -17.72816 -17.09585 -17.01967 -16.59958 -16.40242 -16.05896 -15.78143 -15.45638 -15.31046 -14.94597 -14.69770 -14.59731 -14.40229 -14.29566 -14.05615 -13.83400 -13.48957 -13.28327 -13.18506 -13.07895 -12.99829 -12.88577 -12.63254 -12.57081 -12.42759 -12.20518 -12.11809 -11.82800 -11.73223 -11.66909 -11.54537 -11.34775 -11.08574 -10.97951 -10.85635 -10.12445 -9.81025 -9.27713 -8.97442 -7.92851 -5.20625 -0.09230 0.28681 1.47212 1.48841 1.56824 1.67882 1.77858 2.16757 2.57206 2.71890 2.96184 3.41446 3.48730 3.68625 3.72523 3.78325 3.91763 4.05905 4.07386 4.12134 4.13692 4.24746 4.28795 4.35320 4.38269 4.42773 4.48863 4.55078 4.60517 4.67613 4.71677 4.77688 4.84032 4.89161 4.96254 4.96467 4.97969 5.02488 5.13326 5.18365 5.18833 5.24982 5.29628 5.36117 5.39247 5.49923 5.54306 5.60091 5.65696 6.29436 6.34752 6.42205 7.01377 7.35254 8.12544 8.34296 9.30637 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024434 B = 0.001999 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.667773 B =14001.006556 C =14471.694025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 O -0.323 6.323 4 C 0.151 3.849 5 C -0.159 4.159 6 C -0.047 4.047 7 C -0.183 4.183 8 C 0.571 3.429 9 O -0.591 6.591 10 N -0.618 5.618 11 C 0.119 3.881 12 C -0.107 4.107 13 H 0.092 0.908 14 C -0.082 4.082 15 C -0.138 4.138 16 C 0.185 3.815 17 H 0.050 0.950 18 N -0.734 5.734 19 C -0.236 4.236 20 H 0.077 0.923 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.969 3.031 24 H -0.291 1.291 25 H -0.297 1.297 26 H -0.267 1.267 27 C -0.120 4.120 28 H 0.068 0.932 29 C 0.131 3.869 30 C -0.033 4.033 31 C -0.212 4.212 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.371 0.629 46 H 0.249 0.751 47 H 0.075 0.925 48 H 0.050 0.950 49 H 0.130 0.870 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.944 -13.834 9.307 32.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.236 6.236 4 C 0.104 3.896 5 C -0.177 4.177 6 C -0.065 4.065 7 C -0.186 4.186 8 C 0.363 3.637 9 O -0.473 6.473 10 N -0.351 5.351 11 C -0.001 4.001 12 C -0.126 4.126 13 H 0.110 0.890 14 C -0.120 4.120 15 C -0.178 4.178 16 C 0.076 3.924 17 H 0.068 0.932 18 N -0.373 5.373 19 C -0.368 4.368 20 H 0.095 0.905 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.799 3.201 24 H -0.219 1.219 25 H -0.224 1.224 26 H -0.192 1.192 27 C -0.141 4.141 28 H 0.086 0.914 29 C 0.009 3.991 30 C -0.052 4.052 31 C -0.231 4.231 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.174 0.826 38 H 0.171 0.829 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.203 0.797 46 H 0.058 0.942 47 H 0.094 0.906 48 H 0.068 0.932 49 H 0.147 0.853 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -27.607 -14.158 9.067 32.324 hybrid contribution 1.653 0.189 -0.837 1.863 sum -25.954 -13.969 8.230 30.602 Atomic orbital electron populations 1.21813 0.91449 1.04190 1.03296 1.23152 0.96978 0.80521 1.02657 1.86051 1.18358 1.31641 1.87588 1.19408 0.82827 0.94369 0.92965 1.20602 0.94765 0.95727 1.06647 1.21543 0.92288 0.98843 0.93814 1.19662 0.91031 0.95682 1.12247 1.18393 0.88481 0.79295 0.77581 1.90758 1.64127 1.45525 1.46919 1.49786 1.09097 1.27734 1.48520 1.21710 0.94214 0.90264 0.93874 1.22174 0.95626 0.97365 0.97472 0.88993 1.21581 0.95447 0.92023 1.02988 1.23516 0.95413 0.99191 0.99691 1.20401 0.90582 0.91723 0.89691 0.93212 1.42693 1.10777 1.69890 1.13921 1.19650 0.89489 1.29388 0.98248 0.90512 1.25524 1.02313 1.02950 0.96200 1.69816 1.37736 1.49276 1.05369 0.85194 0.80478 0.76846 0.77598 1.21879 1.22415 1.19190 1.22334 0.98743 0.93634 0.99344 0.91397 1.21402 0.81661 0.94788 1.01201 1.21048 0.95130 0.95828 0.93152 1.21360 0.92938 0.99541 1.09247 0.91885 0.88303 0.91654 0.90966 0.90590 0.82643 0.82894 0.89001 0.88228 0.91131 0.88797 0.91322 0.93419 0.79721 0.94233 0.90627 0.93176 0.85252 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 71.98 0.74 -0.14 16 2 C 0.04 0.36 5.45 71.98 0.39 0.75 16 3 O -0.32 -4.86 10.12 -90.33 -0.91 -5.77 16 4 C 0.15 2.52 6.70 22.63 0.15 2.67 16 5 C -0.16 -2.59 9.97 22.32 0.22 -2.37 16 6 C -0.05 -0.87 8.56 22.51 0.19 -0.68 16 7 C -0.18 -4.40 5.61 -20.08 -0.11 -4.51 16 8 C 0.57 17.85 7.55 86.72 0.65 18.50 16 9 O -0.59 -23.71 17.16 -3.97 -0.07 -23.78 16 10 N -0.62 -17.25 3.42 -818.34 -2.80 -20.05 16 11 C 0.12 2.31 5.24 85.00 0.45 2.75 16 12 C -0.11 -2.32 2.79 -10.56 -0.03 -2.35 16 13 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 14 C -0.08 -1.75 6.66 30.96 0.21 -1.55 16 15 C -0.14 -4.22 6.73 32.63 0.22 -4.00 16 16 C 0.19 6.90 3.41 45.13 0.15 7.06 16 17 H 0.05 1.90 8.09 -2.39 -0.02 1.88 16 18 N -0.73 -36.45 5.10 -322.24 -1.64 -38.10 16 19 C -0.24 -13.01 9.96 84.03 0.84 -12.17 16 20 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 22 N -0.97 -60.17 13.06 21.65 0.28 -59.88 16 23 Si 0.97 46.61 29.55 68.60 2.03 48.63 16 24 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 C -0.12 -3.78 2.43 -10.54 -0.03 -3.80 16 28 H 0.07 2.35 7.89 -2.39 -0.02 2.33 16 29 C 0.13 4.27 6.81 85.15 0.58 4.85 16 30 C -0.03 -0.69 9.60 22.51 0.22 -0.48 16 31 C -0.21 -3.47 9.01 22.32 0.20 -3.27 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.07 0.53 7.65 -2.39 -0.02 0.51 16 36 H 0.08 0.50 7.65 -2.39 -0.02 0.48 16 37 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.15 2.42 5.07 -2.91 -0.01 2.41 16 39 H 0.09 1.48 5.75 -2.39 -0.01 1.46 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.05 1.73 7.98 -2.39 -0.02 1.71 16 45 H 0.37 20.13 7.66 -92.71 -0.71 19.42 16 46 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 47 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.05 1.94 8.13 -2.39 -0.02 1.92 16 49 H 0.13 2.81 7.98 -2.91 -0.02 2.78 16 50 H 0.16 1.69 6.28 -2.91 -0.02 1.67 16 Total: -1.00 -74.33 399.60 2.63 -71.69 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.24 Total: 30.00 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.51 Total: -2.75 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -4.16 Total: -118.03 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.98 Total: -29.55 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -74.33 2.63 -71.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026410336.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.308 kcal (2) G-P(sol) polarization free energy of solvation -74.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds