Wall clock time and date at job start Wed Apr 1 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47453 * 2 1 4 4 C 1.35901 * 117.00063 * 180.02562 * 3 2 1 5 5 C 1.38755 * 120.05737 * 359.95939 * 4 3 2 6 6 C 1.38118 * 119.94690 * 179.97438 * 5 4 3 7 7 C 1.38286 * 120.05497 * 0.06825 * 6 5 4 8 8 C 1.38244 * 120.11199 * 359.97205 * 7 6 5 9 9 C 1.50699 * 119.97556 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47357 * 269.97835 * 9 8 7 11 11 C 1.50696 * 109.47351 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99818 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00328 * 180.02562 * 11 10 9 14 14 C 1.47873 * 126.93982 * 359.69054 * 13 11 10 15 15 C 1.56000 * 105.11028 * 181.87220 * 14 13 11 16 16 H 1.09003 * 116.16224 * 159.04786 * 15 14 13 17 17 C 1.57085 * 99.47617 * 33.16554 * 15 14 13 18 18 C 1.49294 * 126.94654 * 180.02562 * 13 11 10 19 19 H 1.08996 * 116.15070 * 16.70340 * 18 13 11 20 20 C 1.56015 * 104.09227 * 247.55997 * 18 13 11 21 21 N 1.49284 * 104.31980 * 289.11354 * 15 14 13 22 22 C 1.36940 * 126.94112 * 246.61455 * 21 15 14 23 23 H 1.07996 * 120.00171 * 0.02562 * 22 21 15 24 24 C 1.38821 * 119.99701 * 179.97438 * 22 21 15 25 25 N 1.31617 * 120.00017 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99756 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47227 * 59.99989 * 26 24 22 28 28 H 1.48504 * 109.46813 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.46998 * 299.99523 * 26 24 22 30 30 C 1.38165 * 120.05717 * 359.97438 * 8 7 6 31 31 H 1.08997 * 109.46780 * 300.00278 * 1 2 3 32 32 H 1.09003 * 109.47267 * 59.99456 * 1 2 3 33 33 H 1.08995 * 109.47257 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.47128 * 240.00075 * 2 1 3 35 35 H 1.08998 * 109.47282 * 120.00063 * 2 1 3 36 36 H 1.08010 * 120.02444 * 0.04259 * 5 4 3 37 37 H 1.07999 * 119.97285 * 180.02562 * 6 5 4 38 38 H 1.07999 * 119.94732 * 179.97438 * 7 6 5 39 39 H 1.09007 * 109.46739 * 29.98149 * 9 8 7 40 40 H 1.09001 * 109.47017 * 149.97519 * 9 8 7 41 41 H 1.08992 * 109.47129 * 300.00249 * 10 9 8 42 42 H 1.09003 * 109.46585 * 59.99780 * 10 9 8 43 43 H 1.08996 * 110.31544 * 300.90637 * 14 13 11 44 44 H 1.08998 * 110.31520 * 63.09473 * 14 13 11 45 45 H 1.09006 * 112.36675 * 191.50871 * 17 15 14 46 46 H 1.09004 * 112.44470 * 64.09325 * 17 15 14 47 47 H 1.09001 * 110.31641 * 47.67443 * 20 18 13 48 48 H 1.09003 * 110.31650 * 169.85786 * 20 18 13 49 49 H 0.96996 * 120.00074 * 179.97438 * 25 24 22 50 50 H 1.07994 * 120.03283 * 179.74363 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.2000 0.4257 -0.0002 6 6 5.5689 0.6092 -0.0013 7 6 6.0963 1.8876 -0.0013 8 6 5.2553 2.9848 -0.0008 9 6 5.8333 4.3765 -0.0014 10 6 6.0295 4.8479 1.4409 11 6 6.6081 6.2394 1.4403 12 8 6.8402 6.7991 0.3897 13 7 6.8677 6.8618 2.6072 14 6 6.6403 6.3297 3.9680 15 6 7.0692 7.4795 4.9312 16 1 6.6617 7.4375 5.9413 17 6 6.6525 8.7171 4.0581 18 6 7.4363 8.2304 2.7871 19 1 7.4022 8.8833 1.9150 20 6 8.8464 7.9777 3.4052 21 7 8.5560 7.5300 4.8070 22 6 9.4736 7.2233 5.7760 23 1 9.1414 6.9049 6.7530 24 6 10.8311 7.3206 5.5022 25 7 11.2360 7.7072 4.3110 26 14 12.0829 6.9016 6.8238 27 1 11.9026 5.4895 7.2465 28 1 13.4538 7.0858 6.2833 29 1 11.8876 7.7970 7.9923 30 6 3.8852 2.8066 -0.0008 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.7885 -0.5730 -0.0002 37 1 6.2280 -0.2463 -0.0015 38 1 7.1669 2.0291 -0.0017 39 1 6.7944 4.3705 -0.5157 40 1 5.1506 5.0533 -0.5151 41 1 5.0685 4.8539 1.9551 42 1 6.7123 4.1711 1.9546 43 1 5.5868 6.0886 4.1090 44 1 7.2573 5.4472 4.1372 45 1 7.0442 9.6544 4.4534 46 1 5.5767 8.7639 3.8890 47 1 9.3724 7.2052 2.8444 48 1 9.4263 8.9006 3.4149 49 1 12.1845 7.7756 4.1197 50 1 3.2286 3.6639 0.0038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032805311.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:39 Heat of formation + Delta-G solvation = -0.150482 kcal Electronic energy + Delta-G solvation = -29598.622416 eV Core-core repulsion = 25592.506500 eV Total energy + Delta-G solvation = -4006.115916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.41779 -39.97004 -38.28490 -37.60107 -33.78405 -33.53515 -32.32387 -31.56875 -30.12164 -29.50966 -28.80675 -28.44772 -25.30334 -25.04289 -23.76023 -23.05953 -22.68004 -20.95398 -20.19944 -19.81553 -18.34771 -18.08455 -17.12312 -16.41703 -16.31535 -16.22283 -16.19940 -15.66063 -15.30790 -14.61803 -14.42831 -14.00339 -13.75092 -13.69559 -13.51728 -13.31544 -13.23449 -12.96268 -12.60897 -12.48748 -12.18479 -11.96200 -11.88408 -11.79376 -11.62513 -11.58818 -11.27023 -11.06129 -11.00214 -10.99040 -10.85945 -10.82259 -10.75814 -10.56227 -10.27588 -10.08927 -9.60638 -9.43681 -8.93830 -8.71346 -8.35510 -7.97593 -6.93607 -5.76578 -3.10831 1.14439 1.30054 2.90417 3.09783 3.37267 3.40482 3.41648 3.43656 3.64263 4.41530 4.49759 4.52329 4.58333 4.73015 4.79208 4.88027 4.94845 5.03871 5.13405 5.16982 5.19851 5.21423 5.29394 5.34334 5.38033 5.41507 5.51414 5.56984 5.62962 5.65018 5.68842 5.78852 5.80315 5.92972 5.99304 6.10451 6.19194 6.20960 6.28678 6.30545 6.42417 6.51175 6.53502 6.60156 6.62008 6.71225 7.20890 7.41576 7.47855 7.70329 8.05671 8.14826 8.63514 9.07319 9.70608 10.39782 11.35839 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.002151 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.322823 B =13013.869918 C =13499.438531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.129 3.871 5 C -0.216 4.216 6 C -0.078 4.078 7 C -0.152 4.152 8 C -0.037 4.037 9 C -0.065 4.065 10 C -0.128 4.128 11 C 0.527 3.473 12 O -0.558 6.558 13 N -0.607 5.607 14 C 0.083 3.917 15 C 0.143 3.857 16 H 0.106 0.894 17 C -0.151 4.151 18 C 0.096 3.904 19 H 0.111 0.889 20 C 0.177 3.823 21 N -0.600 5.600 22 C -0.231 4.231 23 H 0.080 0.920 24 C -0.007 4.007 25 N -0.920 5.920 26 Si 0.913 3.087 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.285 1.285 30 C -0.149 4.149 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.254 0.746 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.631 -13.617 -7.362 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.084 3.916 5 C -0.235 4.235 6 C -0.096 4.096 7 C -0.170 4.170 8 C -0.037 4.037 9 C -0.103 4.103 10 C -0.168 4.168 11 C 0.316 3.684 12 O -0.438 6.438 13 N -0.340 5.340 14 C -0.043 4.043 15 C 0.034 3.966 16 H 0.124 0.876 17 C -0.191 4.191 18 C -0.007 4.007 19 H 0.129 0.871 20 C 0.053 3.947 21 N -0.324 5.324 22 C -0.359 4.359 23 H 0.097 0.903 24 C -0.204 4.204 25 N -0.567 5.567 26 Si 0.743 3.257 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.211 1.211 30 C -0.168 4.168 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.378 -13.247 -7.953 24.010 hybrid contribution 0.875 -0.720 0.733 1.349 sum -17.504 -13.967 -7.220 23.529 Atomic orbital electron populations 1.21776 0.92759 1.02814 1.03608 1.22763 0.95850 0.82101 1.01330 1.86070 1.19197 1.29165 1.88746 1.18951 0.82105 0.94112 0.96460 1.21191 0.94477 0.97809 1.09994 1.20926 0.94251 0.97284 0.97181 1.21051 1.00103 0.91937 1.03914 1.19757 0.92230 0.95709 0.96034 1.20366 1.02440 0.91408 0.96066 1.21570 1.02567 0.94432 0.98215 1.20144 0.78257 0.87525 0.82507 1.90659 1.54773 1.67730 1.30622 1.49243 1.61893 1.17437 1.05457 1.23297 0.98706 0.99690 0.82565 1.23110 0.86576 0.91218 0.95736 0.87635 1.24149 0.98400 0.99693 0.96854 1.24333 0.96590 0.82789 0.96937 0.87103 1.22268 0.89191 0.99513 0.83774 1.45729 0.98314 1.78655 1.09734 1.19012 0.86031 1.38955 0.91914 0.90259 1.24815 0.96915 1.01635 0.96986 1.69892 1.14374 1.52580 1.19829 0.86196 0.80716 0.78126 0.80662 1.21202 1.21647 1.21134 1.20325 0.94697 0.94827 1.06901 0.91451 0.91504 0.90411 0.92138 0.92067 0.85813 0.85814 0.85627 0.89783 0.90035 0.89236 0.88930 0.92836 0.91126 0.89852 0.91698 0.93296 0.92474 0.93535 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.15 0.38 -0.43 16 2 C 0.05 0.39 5.46 37.15 0.20 0.59 16 3 O -0.32 -3.36 10.14 -19.43 -0.20 -3.56 16 4 C 0.13 1.44 6.69 -39.21 -0.26 1.18 16 5 C -0.22 -2.14 9.04 -39.43 -0.36 -2.49 16 6 C -0.08 -0.78 10.04 -39.61 -0.40 -1.17 16 7 C -0.15 -1.68 9.70 -39.56 -0.38 -2.07 16 8 C -0.04 -0.44 5.13 -104.65 -0.54 -0.97 16 9 C -0.07 -0.83 4.63 -27.88 -0.13 -0.96 16 10 C -0.13 -1.75 4.97 -27.89 -0.14 -1.89 16 11 C 0.53 9.45 7.89 -10.99 -0.09 9.36 16 12 O -0.56 -11.68 16.33 5.55 0.09 -11.59 16 13 N -0.61 -11.13 2.94 -156.81 -0.46 -11.59 16 14 C 0.08 1.40 6.01 -1.68 -0.01 1.39 16 15 C 0.14 2.62 5.52 -62.56 -0.35 2.27 16 16 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 17 C -0.15 -2.56 6.82 -22.32 -0.15 -2.71 16 18 C 0.10 1.87 5.18 -62.57 -0.32 1.54 16 19 H 0.11 2.11 8.06 -51.93 -0.42 1.69 16 20 C 0.18 4.24 4.88 -0.48 0.00 4.24 16 21 N -0.60 -14.34 3.07 -154.61 -0.47 -14.81 16 22 C -0.23 -6.12 10.38 -15.05 -0.16 -6.27 16 23 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 24 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 25 N -0.92 -26.75 10.57 55.49 0.59 -26.17 16 26 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 C -0.15 -1.74 9.64 -39.43 -0.38 -2.12 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.37 7.66 -51.92 -0.40 -0.03 16 35 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 36 H 0.12 0.94 6.30 -52.48 -0.33 0.61 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 40 H 0.08 1.05 8.04 -51.93 -0.42 0.64 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.05 1.34 7.73 -51.93 -0.40 0.94 16 48 H 0.06 1.50 7.48 -51.93 -0.39 1.12 16 49 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 50 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 404.37 15.07 6.09 6.09 Total: -1.00 -32.33 404.37 -10.77 -43.10 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -8.21 Total: 2.70 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -3.17 Total: -0.81 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.35 Total: -52.57 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.11 Total: -15.15 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.33 -10.77 -43.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032805311.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.950 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds