Wall clock time and date at job start Wed Apr 1 2020 02:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47453 * 2 1 4 4 C 1.35901 * 117.00063 * 180.02562 * 3 2 1 5 5 C 1.38755 * 120.05737 * 359.95939 * 4 3 2 6 6 C 1.38118 * 119.94690 * 179.97438 * 5 4 3 7 7 C 1.38286 * 120.05497 * 0.06825 * 6 5 4 8 8 C 1.38244 * 120.11199 * 359.97205 * 7 6 5 9 9 C 1.50699 * 119.97556 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47357 * 269.97835 * 9 8 7 11 11 C 1.50696 * 109.47351 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99818 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00328 * 180.02562 * 11 10 9 14 14 C 1.47873 * 126.93982 * 359.69054 * 13 11 10 15 15 C 1.56000 * 105.11028 * 181.87220 * 14 13 11 16 16 H 1.09003 * 116.16224 * 159.04786 * 15 14 13 17 17 C 1.57085 * 99.47617 * 33.16554 * 15 14 13 18 18 C 1.49294 * 126.94654 * 180.02562 * 13 11 10 19 19 H 1.08996 * 116.15070 * 16.70340 * 18 13 11 20 20 C 1.56015 * 104.09227 * 247.55997 * 18 13 11 21 21 N 1.49284 * 104.31980 * 289.11354 * 15 14 13 22 22 C 1.36940 * 126.94112 * 246.61455 * 21 15 14 23 23 H 1.07996 * 120.00171 * 0.02562 * 22 21 15 24 24 C 1.38821 * 119.99701 * 179.97438 * 22 21 15 25 25 N 1.31617 * 120.00017 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99756 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47227 * 59.99989 * 26 24 22 28 28 H 1.48504 * 109.46813 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.46998 * 299.99523 * 26 24 22 30 30 C 1.38165 * 120.05717 * 359.97438 * 8 7 6 31 31 H 1.08997 * 109.46780 * 300.00278 * 1 2 3 32 32 H 1.09003 * 109.47267 * 59.99456 * 1 2 3 33 33 H 1.08995 * 109.47257 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.47128 * 240.00075 * 2 1 3 35 35 H 1.08998 * 109.47282 * 120.00063 * 2 1 3 36 36 H 1.08010 * 120.02444 * 0.04259 * 5 4 3 37 37 H 1.07999 * 119.97285 * 180.02562 * 6 5 4 38 38 H 1.07999 * 119.94732 * 179.97438 * 7 6 5 39 39 H 1.09007 * 109.46739 * 29.98149 * 9 8 7 40 40 H 1.09001 * 109.47017 * 149.97519 * 9 8 7 41 41 H 1.08992 * 109.47129 * 300.00249 * 10 9 8 42 42 H 1.09003 * 109.46585 * 59.99780 * 10 9 8 43 43 H 1.08996 * 110.31544 * 300.90637 * 14 13 11 44 44 H 1.08998 * 110.31520 * 63.09473 * 14 13 11 45 45 H 1.09006 * 112.36675 * 191.50871 * 17 15 14 46 46 H 1.09004 * 112.44470 * 64.09325 * 17 15 14 47 47 H 1.09001 * 110.31641 * 47.67443 * 20 18 13 48 48 H 1.09003 * 110.31650 * 169.85786 * 20 18 13 49 49 H 0.96996 * 120.00074 * 179.97438 * 25 24 22 50 50 H 1.07994 * 120.03283 * 179.74363 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.2000 0.4257 -0.0002 6 6 5.5689 0.6092 -0.0013 7 6 6.0963 1.8876 -0.0013 8 6 5.2553 2.9848 -0.0008 9 6 5.8333 4.3765 -0.0014 10 6 6.0295 4.8479 1.4409 11 6 6.6081 6.2394 1.4403 12 8 6.8402 6.7991 0.3897 13 7 6.8677 6.8618 2.6072 14 6 6.6403 6.3297 3.9680 15 6 7.0692 7.4795 4.9312 16 1 6.6617 7.4375 5.9413 17 6 6.6525 8.7171 4.0581 18 6 7.4363 8.2304 2.7871 19 1 7.4022 8.8833 1.9150 20 6 8.8464 7.9777 3.4052 21 7 8.5560 7.5300 4.8070 22 6 9.4736 7.2233 5.7760 23 1 9.1414 6.9049 6.7530 24 6 10.8311 7.3206 5.5022 25 7 11.2360 7.7072 4.3110 26 14 12.0829 6.9016 6.8238 27 1 11.9026 5.4895 7.2465 28 1 13.4538 7.0858 6.2833 29 1 11.8876 7.7970 7.9923 30 6 3.8852 2.8066 -0.0008 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.7885 -0.5730 -0.0002 37 1 6.2280 -0.2463 -0.0015 38 1 7.1669 2.0291 -0.0017 39 1 6.7944 4.3705 -0.5157 40 1 5.1506 5.0533 -0.5151 41 1 5.0685 4.8539 1.9551 42 1 6.7123 4.1711 1.9546 43 1 5.5868 6.0886 4.1090 44 1 7.2573 5.4472 4.1372 45 1 7.0442 9.6544 4.4534 46 1 5.5767 8.7639 3.8890 47 1 9.3724 7.2052 2.8444 48 1 9.4263 8.9006 3.4149 49 1 12.1845 7.7756 4.1197 50 1 3.2286 3.6639 0.0038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032805311.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:38 Heat of formation + Delta-G solvation = -17.580076 kcal Electronic energy + Delta-G solvation = -29599.378220 eV Core-core repulsion = 25592.506500 eV Total energy + Delta-G solvation = -4006.871720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.55596 -41.10793 -39.53527 -38.64313 -35.38696 -34.79122 -33.26311 -32.87881 -31.23843 -30.58311 -30.22689 -29.94066 -26.93551 -26.24549 -24.99428 -24.12509 -23.48167 -22.10664 -21.39739 -21.37308 -19.93278 -18.99247 -18.66246 -17.79044 -17.37284 -17.10677 -17.01806 -16.99890 -16.56366 -16.28195 -15.71502 -15.38967 -14.96476 -14.86243 -14.45475 -14.32723 -14.12403 -13.90308 -13.72883 -13.56783 -13.46026 -13.35815 -13.25146 -13.04138 -12.83084 -12.67341 -12.60839 -12.55488 -12.44067 -12.29124 -12.13347 -12.07545 -12.00615 -11.87677 -11.65365 -11.60384 -11.48310 -10.94028 -10.68496 -9.78570 -9.51494 -9.14908 -8.90398 -7.83228 -5.18522 0.32670 0.48821 1.47121 1.49993 1.56015 1.67182 2.03259 2.26638 2.49414 2.78604 3.32011 3.36262 3.53165 3.78174 3.86365 3.91927 3.95464 4.02733 4.06730 4.07313 4.13202 4.18795 4.23260 4.26973 4.38706 4.43306 4.45262 4.57616 4.58652 4.62618 4.73826 4.84395 4.86969 4.94394 4.95362 4.96300 5.03182 5.08186 5.14449 5.17387 5.22203 5.26774 5.36157 5.46105 5.49157 5.54423 5.65499 5.68553 5.82828 6.08076 6.48844 6.70763 7.00879 7.19717 7.70690 8.42674 9.28182 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.002151 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.322823 B =13013.869918 C =13499.438531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.119 3.881 5 C -0.214 4.214 6 C -0.079 4.079 7 C -0.165 4.165 8 C -0.044 4.044 9 C -0.057 4.057 10 C -0.115 4.115 11 C 0.520 3.480 12 O -0.595 6.595 13 N -0.611 5.611 14 C 0.090 3.910 15 C 0.136 3.864 16 H 0.136 0.864 17 C -0.129 4.129 18 C 0.098 3.902 19 H 0.110 0.890 20 C 0.189 3.811 21 N -0.619 5.619 22 C -0.229 4.229 23 H 0.095 0.905 24 C -0.074 4.074 25 N -0.958 5.958 26 Si 0.977 3.023 27 H -0.277 1.277 28 H -0.304 1.304 29 H -0.274 1.274 30 C -0.162 4.162 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.103 0.897 47 H -0.001 1.001 48 H 0.019 0.981 49 H 0.243 0.757 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.520 -15.670 -5.909 27.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.249 6.249 4 C 0.074 3.926 5 C -0.233 4.233 6 C -0.096 4.096 7 C -0.183 4.183 8 C -0.044 4.044 9 C -0.095 4.095 10 C -0.154 4.154 11 C 0.311 3.689 12 O -0.477 6.477 13 N -0.344 5.344 14 C -0.034 4.034 15 C 0.029 3.971 16 H 0.153 0.847 17 C -0.168 4.168 18 C -0.006 4.006 19 H 0.128 0.872 20 C 0.064 3.936 21 N -0.344 5.344 22 C -0.357 4.357 23 H 0.113 0.887 24 C -0.266 4.266 25 N -0.608 5.608 26 Si 0.806 3.194 27 H -0.203 1.203 28 H -0.231 1.231 29 H -0.200 1.200 30 C -0.180 4.180 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.146 0.854 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.133 0.867 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.121 0.879 47 H 0.017 0.983 48 H 0.037 0.963 49 H 0.052 0.948 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.336 -15.324 -6.463 27.052 hybrid contribution 1.691 -0.132 0.254 1.715 sum -19.645 -15.455 -6.209 25.755 Atomic orbital electron populations 1.21810 0.91648 1.04154 1.03117 1.23059 0.96799 0.80771 1.02297 1.86058 1.18838 1.31360 1.88657 1.19095 0.82734 0.94292 0.96451 1.21486 0.94340 0.98630 1.08800 1.21221 0.94770 0.97497 0.96157 1.21208 1.00294 0.92482 1.04350 1.19607 0.92475 0.95064 0.97260 1.20231 1.01637 0.92287 0.95339 1.21544 1.03406 0.91340 0.99151 1.20922 0.77563 0.88689 0.81720 1.90639 1.56266 1.68852 1.31903 1.49351 1.61622 1.17004 1.06444 1.23227 1.01131 0.98021 0.81000 1.23546 0.83103 0.92460 0.97941 0.84651 1.24047 1.00032 0.98663 0.94055 1.24145 0.94254 0.84140 0.98028 0.87193 1.21852 0.91325 0.96037 0.84428 1.45990 1.00950 1.78492 1.09011 1.19514 0.86640 1.36727 0.92858 0.88713 1.25667 0.99153 1.02915 0.98911 1.70142 1.13659 1.54990 1.21972 0.85158 0.77599 0.78273 0.78337 1.20256 1.23069 1.19996 1.20400 0.94642 0.95471 1.07519 0.91961 0.91969 0.88146 0.91082 0.91072 0.83438 0.83454 0.85432 0.91293 0.90494 0.86689 0.88538 0.87996 0.92851 0.90276 0.87906 0.98257 0.96260 0.94761 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 71.98 0.74 -0.56 16 2 C 0.05 0.53 5.46 71.98 0.39 0.93 16 3 O -0.33 -6.55 10.14 -92.44 -0.94 -7.49 16 4 C 0.12 2.49 6.69 22.51 0.15 2.64 16 5 C -0.21 -3.72 9.04 22.37 0.20 -3.52 16 6 C -0.08 -1.39 10.04 22.25 0.22 -1.17 16 7 C -0.17 -3.48 9.70 22.28 0.22 -3.27 16 8 C -0.04 -1.00 5.13 -19.88 -0.10 -1.10 16 9 C -0.06 -1.45 4.63 29.85 0.14 -1.31 16 10 C -0.11 -3.00 4.97 29.85 0.15 -2.85 16 11 C 0.52 18.46 7.89 87.66 0.69 19.15 16 12 O -0.59 -25.38 16.33 -3.04 -0.05 -25.43 16 13 N -0.61 -21.81 2.94 -768.43 -2.26 -24.07 16 14 C 0.09 2.80 6.01 87.16 0.52 3.32 16 15 C 0.14 4.63 5.52 46.93 0.26 4.89 16 16 H 0.14 3.84 8.14 -2.39 -0.02 3.82 16 17 C -0.13 -4.03 6.82 33.45 0.23 -3.80 16 18 C 0.10 3.80 5.18 46.92 0.24 4.05 16 19 H 0.11 4.28 8.06 -2.39 -0.02 4.26 16 20 C 0.19 9.48 4.88 86.74 0.42 9.91 16 21 N -0.62 -29.67 3.07 -643.08 -1.97 -31.64 16 22 C -0.23 -12.09 10.38 84.04 0.87 -11.21 16 23 H 0.10 4.61 7.83 -2.91 -0.02 4.59 16 24 C -0.07 -4.17 5.49 84.86 0.47 -3.70 16 25 N -0.96 -58.62 10.57 21.65 0.23 -58.39 16 26 Si 0.98 45.30 29.55 68.60 2.03 47.33 16 27 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 28 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 29 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 30 C -0.16 -3.60 9.64 22.37 0.22 -3.39 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.07 0.68 7.66 -2.38 -0.02 0.66 16 35 H 0.07 0.69 7.66 -2.39 -0.02 0.68 16 36 H 0.15 1.77 6.30 -2.91 -0.02 1.75 16 37 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 39 H 0.07 1.93 8.04 -2.38 -0.02 1.91 16 40 H 0.08 2.00 8.04 -2.39 -0.02 1.98 16 41 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 46 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 47 H 0.00 -0.05 7.73 -2.39 -0.02 -0.07 16 48 H 0.02 1.09 7.48 -2.39 -0.02 1.07 16 49 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 50 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -74.22 404.37 3.99 -70.23 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.91 Total: 20.46 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 6.03 Total: 9.00 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -4.00 Total: -114.10 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.99 Total: -32.92 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -74.22 3.99 -70.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032805311.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.650 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds