Wall clock time and date at job start Wed Apr 1 2020 02:43:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46508 * 109.46667 * 2 1
4 4 C 1.34773 * 119.99969 * 89.91026 * 3 2 1
5 5 O 1.21550 * 120.00551 * 52.20798 * 4 3 2
6 6 C 1.47851 * 119.99566 * 232.21343 * 4 3 2
7 7 C 1.39467 * 120.01095 * 332.73304 * 6 4 3
8 8 C 1.37939 * 119.68914 * 179.70613 * 7 6 4
9 9 C 1.38208 * 120.06650 * 0.63343 * 8 7 6
10 10 C 1.38760 * 120.60559 * 359.48833 * 9 8 7
11 11 C 1.37657 * 119.86070 * 0.02562 * 10 9 8
12 12 C 1.50724 * 121.41894 * 180.58032 * 11 10 9
13 13 C 1.52967 * 109.76239 * 342.70508 * 12 11 10
14 14 O 1.43216 * 108.45855 * 49.22446 * 13 12 11
15 15 C 1.42711 * 113.15996 * 289.45827 * 14 13 12
16 16 C 1.46494 * 119.99669 * 269.90180 * 3 2 1
17 17 H 1.09007 * 110.64701 * 314.94859 * 16 3 2
18 18 C 1.55163 * 110.72129 * 78.28603 * 16 3 2
19 19 C 1.54912 * 101.58055 * 153.86054 * 18 16 3
20 20 N 1.47424 * 104.83607 * 322.99243 * 19 18 16
21 21 C 1.36930 * 125.64804 * 204.16202 * 20 19 18
22 22 H 1.08004 * 119.99647 * 160.89938 * 21 20 19
23 23 C 1.38807 * 120.00365 * 340.90378 * 21 20 19
24 24 N 1.31620 * 120.00182 * 145.39497 * 23 21 20
25 25 Si 1.86797 * 119.99966 * 325.39819 * 23 21 20
26 26 H 1.48505 * 109.47569 * 92.79470 * 25 23 21
27 27 H 1.48503 * 109.47222 * 212.79656 * 25 23 21
28 28 H 1.48499 * 109.47079 * 332.79255 * 25 23 21
29 29 C 1.47028 * 108.70025 * 24.12868 * 20 19 18
30 30 H 1.09008 * 109.46759 * 180.02562 * 1 2 3
31 31 H 1.08996 * 109.47597 * 299.99950 * 1 2 3
32 32 H 1.09002 * 109.47412 * 60.00477 * 1 2 3
33 33 H 1.08996 * 109.47597 * 240.00050 * 2 1 3
34 34 H 1.09002 * 109.47412 * 119.99522 * 2 1 3
35 35 H 1.07994 * 120.15204 * 359.97438 * 7 6 4
36 36 H 1.08003 * 119.96595 * 180.36279 * 8 7 6
37 37 H 1.07993 * 119.69744 * 179.76854 * 9 8 7
38 38 H 1.09003 * 109.42130 * 102.79336 * 12 11 10
39 39 H 1.09000 * 109.42254 * 222.67300 * 12 11 10
40 40 H 1.09001 * 109.63930 * 168.91883 * 13 12 11
41 41 H 1.09004 * 109.63853 * 289.32395 * 13 12 11
42 42 H 1.08999 * 109.33398 * 291.50996 * 15 14 13
43 43 H 1.08997 * 109.33101 * 172.01207 * 15 14 13
44 44 H 1.09000 * 111.00270 * 271.93489 * 18 16 3
45 45 H 1.08991 * 111.00215 * 35.78727 * 18 16 3
46 46 H 1.09002 * 110.36560 * 204.14968 * 19 18 16
47 47 H 1.09003 * 110.36421 * 81.83026 * 19 18 16
48 48 H 0.97002 * 120.00141 * 180.02562 * 24 23 21
49 49 H 1.09004 * 109.87977 * 239.52406 * 29 20 19
50 50 H 1.09003 * 109.88202 * 118.35945 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0182 1.3813 0.0000
4 6 2.2411 2.0173 1.1672
5 8 2.9392 1.5004 2.0174
6 6 1.6362 3.3437 1.4134
7 6 1.3385 4.1845 0.3413
8 6 0.7687 5.4182 0.5783
9 6 0.5068 5.8226 1.8736
10 6 0.8024 4.9932 2.9461
11 6 1.3620 3.7557 2.7216
12 6 1.6852 2.8215 3.8594
13 6 1.7123 3.5998 5.1760
14 8 0.5209 4.3900 5.2602
15 6 0.5047 5.4810 4.3404
16 6 2.2643 2.0711 -1.2687
17 1 2.8022 1.4229 -1.9606
18 6 0.9320 2.5625 -1.8939
19 6 1.4127 3.7637 -2.7460
20 7 2.4786 4.3923 -1.9448
21 6 2.8780 5.6991 -2.0331
22 1 3.4314 6.1505 -1.2228
23 6 2.5717 6.4436 -3.1638
24 7 2.3068 7.7282 -3.0541
25 14 2.5354 5.6224 -4.8412
26 1 1.1531 5.1700 -5.1412
27 1 2.9745 6.5921 -5.8767
28 1 3.4498 4.4524 -4.8394
29 6 3.0412 3.3839 -1.0347
30 1 -0.3633 -1.0278 0.0005
31 1 -0.3634 0.5138 0.8899
32 1 -0.3634 0.5138 -0.8900
33 1 1.8934 -0.5138 -0.8899
34 1 1.8934 -0.5138 0.8900
35 1 1.5491 3.8694 -0.6700
36 1 0.5309 6.0705 -0.2491
37 1 0.0640 6.7912 2.0525
38 1 0.9257 2.0417 3.9150
39 1 2.6606 2.3660 3.6884
40 1 1.7496 2.9027 6.0130
41 1 2.5882 4.2483 5.2002
42 1 1.2569 6.2127 4.6350
43 1 -0.4784 5.9515 4.3559
44 1 0.4873 1.7909 -2.5223
45 1 0.2340 2.8858 -1.1218
46 1 0.5948 4.4660 -2.9070
47 1 1.8096 3.4171 -3.7002
48 1 2.0924 8.2484 -3.8443
49 1 2.9187 3.7079 -0.0011
50 1 4.0980 3.2337 -1.2555
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001033895707.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:43:07
Heat of formation + Delta-G solvation = 79.509158 kcal
Electronic energy + Delta-G solvation = -32978.646231 eV
Core-core repulsion = 28975.984616 eV
Total energy + Delta-G solvation = -4002.661615 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-41.61880 -39.45843 -38.40032 -36.94154 -35.37293 -32.79140 -32.56860 -31.71023
-30.75114 -29.79939 -29.12362 -27.79425 -25.35002 -24.71322 -24.22338 -23.39012
-22.10450 -21.42332 -20.83115 -19.99270 -18.45339 -17.41392 -17.30073 -16.62449
-16.07710 -15.96121 -15.63030 -15.54790 -15.17482 -14.75004 -14.30103 -14.07946
-13.90420 -13.70274 -13.47757 -13.27751 -13.00008 -12.95388 -12.83423 -12.62296
-12.28548 -12.21842 -11.96218 -11.89681 -11.68127 -11.56710 -11.38800 -11.12089
-11.06888 -10.98529 -10.84460 -10.53222 -10.43768 -10.35711 -9.93762 -9.73888
-9.56137 -9.22204 -8.69687 -8.38808 -8.19448 -7.97002 -7.28219 -6.19879
-3.42704 1.20894 1.81521 2.73605 3.11875 3.23840 3.39896 3.43603
3.92514 4.17835 4.39782 4.61373 4.67384 4.86522 4.90611 4.93889
5.00836 5.05421 5.12580 5.18211 5.27892 5.29559 5.35068 5.38409
5.43657 5.45190 5.61464 5.66063 5.67060 5.70483 5.77187 5.85884
5.93034 5.98777 6.04073 6.10107 6.17755 6.20574 6.28206 6.37578
6.40762 6.46204 6.50139 6.53116 6.83615 6.92701 7.00767 7.15376
7.19065 7.42228 7.47178 7.56911 8.08203 8.13460 8.63152 9.47488
9.89566 10.93549
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.011635 B = 0.005004 C = 0.003838
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2406.024312 B = 5594.555070 C = 7293.584012
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.127 3.873
3 N -0.656 5.656
4 C 0.605 3.395
5 O -0.508 6.508
6 C -0.182 4.182
7 C -0.102 4.102
8 C -0.116 4.116
9 C -0.086 4.086
10 C -0.158 4.158
11 C -0.023 4.023
12 C -0.131 4.131
13 C 0.060 3.940
14 O -0.381 6.381
15 C 0.109 3.891
16 C 0.140 3.860
17 H 0.093 0.907
18 C -0.164 4.164
19 C 0.110 3.890
20 N -0.584 5.584
21 C -0.260 4.260
22 H 0.094 0.906
23 C 0.043 3.957
24 N -0.876 5.876
25 Si 0.851 3.149
26 H -0.283 1.283
27 H -0.297 1.297
28 H -0.274 1.274
29 C 0.072 3.928
30 H 0.062 0.938
31 H 0.054 0.946
32 H 0.063 0.937
33 H 0.074 0.926
34 H 0.075 0.925
35 H 0.221 0.779
36 H 0.138 0.862
37 H 0.119 0.881
38 H 0.075 0.925
39 H 0.116 0.884
40 H 0.094 0.906
41 H 0.054 0.946
42 H 0.060 0.940
43 H 0.100 0.900
44 H 0.074 0.926
45 H 0.089 0.911
46 H 0.069 0.931
47 H 0.030 0.970
48 H 0.266 0.734
49 H 0.081 0.919
50 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.177 -11.132 8.634 15.009
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.005 3.995
3 N -0.393 5.393
4 C 0.397 3.603
5 O -0.383 6.383
6 C -0.186 4.186
7 C -0.120 4.120
8 C -0.134 4.134
9 C -0.104 4.104
10 C -0.159 4.159
11 C -0.024 4.024
12 C -0.168 4.168
13 C -0.016 4.016
14 O -0.300 6.300
15 C 0.033 3.967
16 C 0.036 3.964
17 H 0.111 0.889
18 C -0.204 4.204
19 C -0.015 4.015
20 N -0.311 5.311
21 C -0.386 4.386
22 H 0.111 0.889
23 C -0.158 4.158
24 N -0.516 5.516
25 Si 0.679 3.321
26 H -0.210 1.210
27 H -0.224 1.224
28 H -0.199 1.199
29 C -0.052 4.052
30 H 0.081 0.919
31 H 0.073 0.927
32 H 0.082 0.918
33 H 0.092 0.908
34 H 0.093 0.907
35 H 0.235 0.765
36 H 0.155 0.845
37 H 0.137 0.863
38 H 0.094 0.906
39 H 0.134 0.866
40 H 0.113 0.887
41 H 0.072 0.928
42 H 0.078 0.922
43 H 0.118 0.882
44 H 0.093 0.907
45 H 0.108 0.892
46 H 0.087 0.913
47 H 0.048 0.952
48 H 0.076 0.924
49 H 0.098 0.902
50 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -4.901 -11.189 9.166 15.271
hybrid contribution 0.297 -0.094 -1.563 1.594
sum -4.603 -11.282 7.602 14.362
Atomic orbital electron populations
1.22314 0.96380 1.01743 1.02789 1.21244 0.93679 0.81799 1.02790
1.47238 1.73269 1.14107 1.04713 1.18311 0.76951 0.84449 0.80582
1.90564 1.32567 1.68407 1.46778 1.20247 1.07905 0.96389 0.94034
1.24962 0.88601 0.93700 1.04704 1.21287 0.98462 0.97227 0.96416
1.21265 0.97893 0.98465 0.92765 1.19957 1.04280 0.95446 0.96169
1.19322 0.96060 0.93820 0.93188 1.21493 1.05278 0.97479 0.92514
1.22652 0.87490 0.93960 0.97531 1.88003 1.40680 1.42753 1.58538
1.21319 1.02121 0.88391 0.84911 1.22119 0.96041 0.93845 0.84357
0.88882 1.23641 0.97688 0.98646 1.00422 1.21980 0.92252 0.93445
0.93789 1.45181 1.36322 1.07434 1.42186 1.18460 1.36290 0.81610
1.02221 0.88877 1.24963 0.98636 0.94774 0.97468 1.70016 1.44255
1.07630 1.29684 0.87281 0.78281 0.79546 0.87011 1.21018 1.22373
1.19946 1.22813 0.96111 0.87736 0.98512 0.91933 0.92693 0.91805
0.90801 0.90699 0.76512 0.84455 0.86320 0.90616 0.86570 0.88739
0.92787 0.92237 0.88231 0.90716 0.89240 0.91274 0.95215 0.92430
0.90240 0.94394
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.78 10.09 37.16 0.37 -1.41 16
2 C 0.13 1.46 6.36 -4.04 -0.03 1.44 16
3 N -0.66 -9.62 2.50 -165.12 -0.41 -10.03 16
4 C 0.60 10.28 5.44 -12.33 -0.07 10.21 16
5 O -0.51 -9.29 14.07 5.32 0.07 -9.21 16
6 C -0.18 -3.21 5.17 -104.90 -0.54 -3.76 16
7 C -0.10 -1.88 4.85 -39.23 -0.19 -2.07 16
8 C -0.12 -2.15 9.88 -39.70 -0.39 -2.54 16
9 C -0.09 -1.39 9.66 -39.40 -0.38 -1.77 16
10 C -0.16 -2.51 5.80 -104.65 -0.61 -3.12 16
11 C -0.02 -0.39 5.80 -104.21 -0.60 -0.99 16
12 C -0.13 -1.94 5.08 -27.89 -0.14 -2.09 16
13 C 0.06 0.77 6.85 37.14 0.25 1.03 16
14 O -0.38 -5.42 10.80 -35.23 -0.38 -5.80 16
15 C 0.11 1.46 6.66 36.00 0.24 1.69 16
16 C 0.14 2.14 3.32 -66.10 -0.22 1.92 16
17 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16
18 C -0.16 -2.44 4.86 -24.58 -0.12 -2.56 16
19 C 0.11 2.08 4.64 -2.53 -0.01 2.07 16
20 N -0.58 -12.49 1.85 -208.29 -0.39 -12.88 16
21 C -0.26 -6.59 10.04 -15.06 -0.15 -6.75 16
22 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16
23 C 0.04 1.14 5.27 -17.43 -0.09 1.05 16
24 N -0.88 -24.48 13.97 55.49 0.78 -23.71 16
25 Si 0.85 20.21 24.88 -169.99 -4.23 15.98 16
26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16
27 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16
28 H -0.27 -6.52 7.09 56.52 0.40 -6.12 16
29 C 0.07 1.36 5.44 -3.06 -0.02 1.34 16
30 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16
31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.06 0.66 6.72 -51.93 -0.35 0.31 16
33 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16
34 H 0.07 0.88 7.72 -51.93 -0.40 0.48 16
35 H 0.22 4.03 0.19 -126.11 -0.02 4.00 16
36 H 0.14 2.76 8.06 -52.48 -0.42 2.34 16
37 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16
38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16
39 H 0.12 1.84 5.52 -51.93 -0.29 1.56 16
40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16
41 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16
42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
43 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16
44 H 0.07 0.91 7.80 -51.93 -0.41 0.50 16
45 H 0.09 1.38 6.18 -51.93 -0.32 1.05 16
46 H 0.07 1.38 7.68 -51.93 -0.40 0.98 16
47 H 0.03 0.58 6.08 -51.93 -0.32 0.26 16
48 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16
49 H 0.08 1.61 2.92 -77.84 -0.23 1.38 16
50 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16
LS Contribution 369.18 15.07 5.56 5.56
Total: -1.00 -29.06 369.18 -9.04 -38.10
By element:
Atomic # 1 Polarization: 15.63 SS G_CDS: -7.35 Total: 8.28 kcal
Atomic # 6 Polarization: -3.60 SS G_CDS: -2.69 Total: -6.29 kcal
Atomic # 7 Polarization: -46.59 SS G_CDS: -0.02 Total: -46.61 kcal
Atomic # 8 Polarization: -14.71 SS G_CDS: -0.31 Total: -15.01 kcal
Atomic # 14 Polarization: 20.21 SS G_CDS: -4.23 Total: 15.98 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -29.06 -9.04 -38.10 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033895707.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.610 kcal
(2) G-P(sol) polarization free energy of solvation -29.059 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.551 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) 79.509 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds