Wall clock time and date at job start Wed Apr 1 2020 02:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46491 * 109.47286 * 2 1 4 4 C 1.34779 * 119.99975 * 102.86378 * 3 2 1 5 5 O 1.21554 * 119.99845 * 187.37499 * 4 3 2 6 6 C 1.47841 * 119.99896 * 7.37554 * 4 3 2 7 7 C 1.39461 * 120.01576 * 327.20254 * 6 4 3 8 8 C 1.37937 * 119.69641 * 179.68550 * 7 6 4 9 9 C 1.38209 * 120.05750 * 0.59471 * 8 7 6 10 10 C 1.38752 * 120.61575 * 359.78528 * 9 8 7 11 11 C 1.37669 * 119.86118 * 359.82767 * 10 9 8 12 12 C 1.50722 * 121.42871 * 180.35936 * 11 10 9 13 13 C 1.52967 * 109.76725 * 343.01776 * 12 11 10 14 14 O 1.43215 * 108.45773 * 49.14448 * 13 12 11 15 15 C 1.42716 * 113.12414 * 289.38765 * 14 13 12 16 16 C 1.46503 * 119.99927 * 282.86148 * 3 2 1 17 17 H 1.08998 * 110.88866 * 9.88868 * 16 3 2 18 18 C 1.55157 * 111.00518 * 246.00391 * 16 3 2 19 19 C 1.54333 * 102.94203 * 277.42913 * 18 16 3 20 20 N 1.47020 * 107.27002 * 337.80759 * 19 18 16 21 21 C 1.36937 * 125.64705 * 178.98636 * 20 19 18 22 22 H 1.08001 * 120.00107 * 185.31169 * 21 20 19 23 23 C 1.38817 * 119.99820 * 5.30875 * 21 20 19 24 24 N 1.31619 * 120.00013 * 5.35943 * 23 21 20 25 25 Si 1.86800 * 119.99657 * 185.35354 * 23 21 20 26 26 H 1.48498 * 109.46899 * 95.00228 * 25 23 21 27 27 H 1.48500 * 109.47033 * 215.00274 * 25 23 21 28 28 H 1.48504 * 109.47244 * 335.00055 * 25 23 21 29 29 C 1.47430 * 108.70526 * 358.94083 * 20 19 18 30 30 H 1.08997 * 109.47241 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46508 * 299.99837 * 1 2 3 32 32 H 1.08994 * 109.47090 * 60.00043 * 1 2 3 33 33 H 1.09004 * 109.46631 * 239.99671 * 2 1 3 34 34 H 1.09001 * 109.47159 * 120.00351 * 2 1 3 35 35 H 1.07998 * 120.15056 * 359.92557 * 7 6 4 36 36 H 1.07997 * 119.96984 * 180.33823 * 8 7 6 37 37 H 1.08001 * 119.68916 * 179.75725 * 9 8 7 38 38 H 1.09007 * 109.41968 * 103.10926 * 12 11 10 39 39 H 1.08993 * 109.41902 * 222.98510 * 12 11 10 40 40 H 1.09011 * 109.63973 * 168.83212 * 13 12 11 41 41 H 1.09003 * 109.63936 * 289.24130 * 13 12 11 42 42 H 1.09001 * 109.33456 * 172.01730 * 15 14 13 43 43 H 1.09001 * 109.33481 * 291.67817 * 15 14 13 44 44 H 1.08998 * 110.72126 * 35.78908 * 18 16 3 45 45 H 1.08997 * 110.71961 * 159.06778 * 18 16 3 46 46 H 1.09002 * 109.87912 * 97.22256 * 19 18 16 47 47 H 1.08999 * 109.88024 * 218.23157 * 19 18 16 48 48 H 0.97002 * 119.99748 * 179.97438 * 24 23 21 49 49 H 1.08997 * 110.36237 * 265.28919 * 29 20 19 50 50 H 1.08997 * 110.36313 * 142.96713 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4880 1.9298 1.1379 5 8 2.7674 3.1123 1.1722 6 6 2.6634 1.0935 2.3444 7 6 1.7955 0.0293 2.5876 8 6 1.9691 -0.7508 3.7119 9 6 2.9915 -0.4697 4.5984 10 6 3.8545 0.5921 4.3680 11 6 3.6963 1.3729 3.2453 12 6 4.6181 2.5298 2.9562 13 6 5.3798 2.9141 4.2259 14 8 5.9352 1.7250 4.7989 15 6 4.9495 0.8633 5.3670 16 6 1.9963 2.1659 -1.2369 17 1 1.4348 1.6490 -2.0151 18 6 3.4361 2.4928 -1.7139 19 6 3.8081 3.7289 -0.8681 20 7 2.5508 4.3538 -0.4318 21 6 2.4451 5.4680 0.3572 22 1 1.4745 5.8009 0.6942 23 6 3.5855 6.1695 0.7239 24 7 4.7561 5.8276 0.2288 25 14 3.4585 7.5988 1.9198 26 1 3.7410 7.1189 3.2964 27 1 4.4450 8.6446 1.5479 28 1 2.0884 8.1693 1.8658 29 6 1.4227 3.5827 -0.9854 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.9936 -0.1855 1.8969 36 1 1.3030 -1.5794 3.9018 37 1 3.1196 -1.0819 5.4788 38 1 5.3281 2.2424 2.1806 39 1 4.0326 3.3828 2.6136 40 1 6.1814 3.6093 3.9760 41 1 4.6970 3.3820 4.9352 42 1 5.4164 -0.0785 5.6552 43 1 4.5204 1.3381 6.2493 44 1 4.1104 1.6632 -1.5017 45 1 3.4445 2.7359 -2.7764 46 1 4.3905 3.4219 0.0007 47 1 4.3841 4.4310 -1.4710 48 1 5.5529 6.3181 0.4847 49 1 1.0832 4.0263 -1.9213 50 1 0.6045 3.5387 -0.2666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033895708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:10 Heat of formation + Delta-G solvation = 53.395888 kcal Electronic energy + Delta-G solvation = -33276.828809 eV Core-core repulsion = 29273.034838 eV Total energy + Delta-G solvation = -4003.793971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.74450 -39.30938 -37.46952 -36.01196 -35.53146 -32.57020 -32.35819 -31.38250 -30.14773 -29.43247 -28.71928 -27.11626 -25.49397 -24.47799 -23.71311 -23.39528 -22.62954 -20.87014 -19.99189 -19.78712 -18.27498 -17.02477 -16.47437 -16.38912 -16.32588 -15.64770 -15.47701 -15.18545 -14.84915 -14.43077 -14.12858 -13.95258 -13.73798 -13.59196 -13.27321 -13.19360 -12.95249 -12.51982 -12.20943 -12.12454 -11.95323 -11.82394 -11.67551 -11.63397 -11.51582 -11.44196 -11.20523 -10.75512 -10.71655 -10.62650 -10.59119 -10.35288 -9.95924 -9.89304 -9.70648 -9.51959 -9.38318 -8.67250 -8.45343 -8.44420 -8.22532 -7.82378 -6.21955 -5.39283 -2.64212 1.13874 1.41383 3.35445 3.45529 3.53773 3.59563 3.60425 4.01127 4.09239 4.70673 4.73936 4.80576 4.88757 4.92435 5.05046 5.20787 5.21899 5.33498 5.35876 5.42238 5.45266 5.51100 5.59017 5.64409 5.64935 5.71905 5.75270 5.79677 5.92019 5.93719 5.97001 6.07790 6.14777 6.19367 6.28364 6.32346 6.42837 6.46775 6.54637 6.56403 6.64843 6.67617 6.79443 6.89496 7.09733 7.28329 7.34735 7.79763 7.92724 8.03818 8.11752 8.56448 9.13052 9.52726 10.14462 10.81941 11.72721 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009002 B = 0.006392 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.667760 B = 4379.238807 C = 6600.145958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 N -0.604 5.604 4 C 0.504 3.496 5 O -0.398 6.398 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.138 4.138 9 C -0.101 4.101 10 C -0.135 4.135 11 C -0.012 4.012 12 C -0.134 4.134 13 C 0.061 3.939 14 O -0.380 6.380 15 C 0.105 3.895 16 C 0.133 3.867 17 H 0.080 0.920 18 C -0.161 4.161 19 C 0.188 3.812 20 N -0.562 5.562 21 C -0.179 4.179 22 H 0.064 0.936 23 C -0.010 4.010 24 N -0.923 5.923 25 Si 0.895 3.105 26 H -0.295 1.295 27 H -0.296 1.296 28 H -0.287 1.287 29 C 0.133 3.867 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.151 0.849 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.139 0.861 40 H 0.101 0.899 41 H 0.052 0.948 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.042 0.958 47 H 0.044 0.956 48 H 0.244 0.756 49 H 0.021 0.979 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.126 -16.994 4.289 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.049 4.049 3 N -0.341 5.341 4 C 0.289 3.711 5 O -0.264 6.264 6 C -0.120 4.120 7 C -0.137 4.137 8 C -0.156 4.156 9 C -0.119 4.119 10 C -0.135 4.135 11 C -0.013 4.013 12 C -0.170 4.170 13 C -0.015 4.015 14 O -0.299 6.299 15 C 0.029 3.971 16 C 0.029 3.971 17 H 0.098 0.902 18 C -0.200 4.200 19 C 0.064 3.936 20 N -0.287 5.287 21 C -0.308 4.308 22 H 0.082 0.918 23 C -0.205 4.205 24 N -0.573 5.573 25 Si 0.727 3.273 26 H -0.223 1.223 27 H -0.223 1.223 28 H -0.213 1.213 29 C 0.005 3.995 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.168 0.832 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.101 0.899 39 H 0.156 0.844 40 H 0.119 0.881 41 H 0.070 0.930 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.039 0.961 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.613 -16.138 4.406 17.353 hybrid contribution -0.497 0.424 0.697 0.955 sum -5.109 -15.715 5.103 17.294 Atomic orbital electron populations 1.22259 0.96472 1.01703 1.02841 1.22307 0.94033 0.84532 1.04051 1.47707 1.64795 1.12607 1.08995 1.18604 0.80734 0.88887 0.82870 1.91538 1.42953 1.11514 1.80391 1.20277 0.97241 0.96971 0.97482 1.22078 0.99978 0.94192 0.97447 1.20957 0.98905 1.00722 0.94993 1.21027 0.95023 0.96676 0.99209 1.20217 0.99017 0.96975 0.97325 1.19623 0.94243 0.95314 0.92114 1.21564 0.98272 0.98894 0.98259 1.22717 0.98440 0.86416 0.93912 1.88039 1.32153 1.32936 1.76772 1.21329 0.87918 0.94902 0.92992 1.22271 0.97269 0.92778 0.84766 0.90156 1.23380 0.95633 1.00834 1.00164 1.21107 0.88771 0.88909 0.94845 1.44055 0.99171 1.28730 1.56768 1.18768 0.92583 0.98687 1.20786 0.91772 1.24509 0.95665 0.99166 1.01145 1.69944 0.97505 1.42513 1.47340 0.86329 0.76574 0.82675 0.81674 1.22279 1.22309 1.21263 1.21720 0.92398 0.89232 0.96169 0.91898 0.92175 0.91896 0.91692 0.87670 0.83219 0.85919 0.86125 0.89887 0.84385 0.88114 0.92951 0.88220 0.92165 0.92584 0.91936 0.94037 0.93754 0.94557 0.96127 0.94771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.20 37.16 0.34 -1.39 16 2 C 0.07 0.87 5.56 -4.04 -0.02 0.85 16 3 N -0.60 -9.79 2.58 -164.77 -0.43 -10.22 16 4 C 0.50 9.67 6.58 -12.33 -0.08 9.59 16 5 O -0.40 -9.32 5.98 5.32 0.03 -9.29 16 6 C -0.12 -1.96 5.56 -104.90 -0.58 -2.54 16 7 C -0.12 -1.58 7.45 -39.24 -0.29 -1.87 16 8 C -0.14 -1.57 10.03 -39.70 -0.40 -1.97 16 9 C -0.10 -1.20 9.66 -39.40 -0.38 -1.58 16 10 C -0.13 -1.96 5.80 -104.65 -0.61 -2.56 16 11 C -0.01 -0.21 5.80 -104.21 -0.60 -0.81 16 12 C -0.13 -2.57 5.15 -27.89 -0.14 -2.72 16 13 C 0.06 1.04 6.85 37.14 0.25 1.30 16 14 O -0.38 -6.13 10.80 -35.23 -0.38 -6.51 16 15 C 0.11 1.38 6.66 35.99 0.24 1.62 16 16 C 0.13 2.29 3.72 -65.78 -0.24 2.05 16 17 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 18 C -0.16 -3.06 6.52 -24.89 -0.16 -3.22 16 19 C 0.19 4.63 4.25 -3.06 -0.01 4.61 16 20 N -0.56 -14.29 1.73 -170.06 -0.29 -14.58 16 21 C -0.18 -5.07 8.69 -15.06 -0.13 -5.20 16 22 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.30 5.46 -17.43 -0.10 -0.39 16 24 N -0.92 -27.40 10.41 55.49 0.58 -26.82 16 25 Si 0.89 23.03 29.56 -169.99 -5.02 18.00 16 26 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 27 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 C 0.13 2.78 6.16 -2.52 -0.02 2.76 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.66 7.23 -51.93 -0.38 0.28 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.11 1.21 3.75 -53.51 -0.20 1.01 16 35 H 0.15 1.69 3.19 -52.49 -0.17 1.53 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 39 H 0.14 3.22 5.57 -51.93 -0.29 2.93 16 40 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.04 1.13 6.35 -51.93 -0.33 0.81 16 47 H 0.04 1.24 7.09 -51.93 -0.37 0.87 16 48 H 0.24 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -32.57 372.56 -10.45 -43.02 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.61 Total: 2.26 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.94 Total: -1.48 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.14 Total: -51.62 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.35 Total: -15.80 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.57 -10.45 -43.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033895708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.414 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds