Wall clock time and date at job start Wed Apr 1 2020 02:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46491 * 109.47286 * 2 1 4 4 C 1.34779 * 119.99975 * 102.86378 * 3 2 1 5 5 O 1.21554 * 119.99845 * 187.37499 * 4 3 2 6 6 C 1.47841 * 119.99896 * 7.37554 * 4 3 2 7 7 C 1.39461 * 120.01576 * 327.20254 * 6 4 3 8 8 C 1.37937 * 119.69641 * 179.68550 * 7 6 4 9 9 C 1.38209 * 120.05750 * 0.59471 * 8 7 6 10 10 C 1.38752 * 120.61575 * 359.78528 * 9 8 7 11 11 C 1.37669 * 119.86118 * 359.82767 * 10 9 8 12 12 C 1.50722 * 121.42871 * 180.35936 * 11 10 9 13 13 C 1.52967 * 109.76725 * 343.01776 * 12 11 10 14 14 O 1.43215 * 108.45773 * 49.14448 * 13 12 11 15 15 C 1.42716 * 113.12414 * 289.38765 * 14 13 12 16 16 C 1.46503 * 119.99927 * 282.86148 * 3 2 1 17 17 H 1.08998 * 110.88866 * 9.88868 * 16 3 2 18 18 C 1.55157 * 111.00518 * 246.00391 * 16 3 2 19 19 C 1.54333 * 102.94203 * 277.42913 * 18 16 3 20 20 N 1.47020 * 107.27002 * 337.80759 * 19 18 16 21 21 C 1.36937 * 125.64705 * 178.98636 * 20 19 18 22 22 H 1.08001 * 120.00107 * 185.31169 * 21 20 19 23 23 C 1.38817 * 119.99820 * 5.30875 * 21 20 19 24 24 N 1.31619 * 120.00013 * 5.35943 * 23 21 20 25 25 Si 1.86800 * 119.99657 * 185.35354 * 23 21 20 26 26 H 1.48498 * 109.46899 * 95.00228 * 25 23 21 27 27 H 1.48500 * 109.47033 * 215.00274 * 25 23 21 28 28 H 1.48504 * 109.47244 * 335.00055 * 25 23 21 29 29 C 1.47430 * 108.70526 * 358.94083 * 20 19 18 30 30 H 1.08997 * 109.47241 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46508 * 299.99837 * 1 2 3 32 32 H 1.08994 * 109.47090 * 60.00043 * 1 2 3 33 33 H 1.09004 * 109.46631 * 239.99671 * 2 1 3 34 34 H 1.09001 * 109.47159 * 120.00351 * 2 1 3 35 35 H 1.07998 * 120.15056 * 359.92557 * 7 6 4 36 36 H 1.07997 * 119.96984 * 180.33823 * 8 7 6 37 37 H 1.08001 * 119.68916 * 179.75725 * 9 8 7 38 38 H 1.09007 * 109.41968 * 103.10926 * 12 11 10 39 39 H 1.08993 * 109.41902 * 222.98510 * 12 11 10 40 40 H 1.09011 * 109.63973 * 168.83212 * 13 12 11 41 41 H 1.09003 * 109.63936 * 289.24130 * 13 12 11 42 42 H 1.09001 * 109.33456 * 172.01730 * 15 14 13 43 43 H 1.09001 * 109.33481 * 291.67817 * 15 14 13 44 44 H 1.08998 * 110.72126 * 35.78908 * 18 16 3 45 45 H 1.08997 * 110.71961 * 159.06778 * 18 16 3 46 46 H 1.09002 * 109.87912 * 97.22256 * 19 18 16 47 47 H 1.08999 * 109.88024 * 218.23157 * 19 18 16 48 48 H 0.97002 * 119.99748 * 179.97438 * 24 23 21 49 49 H 1.08997 * 110.36237 * 265.28919 * 29 20 19 50 50 H 1.08997 * 110.36313 * 142.96713 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4880 1.9298 1.1379 5 8 2.7674 3.1123 1.1722 6 6 2.6634 1.0935 2.3444 7 6 1.7955 0.0293 2.5876 8 6 1.9691 -0.7508 3.7119 9 6 2.9915 -0.4697 4.5984 10 6 3.8545 0.5921 4.3680 11 6 3.6963 1.3729 3.2453 12 6 4.6181 2.5298 2.9562 13 6 5.3798 2.9141 4.2259 14 8 5.9352 1.7250 4.7989 15 6 4.9495 0.8633 5.3670 16 6 1.9963 2.1659 -1.2369 17 1 1.4348 1.6490 -2.0151 18 6 3.4361 2.4928 -1.7139 19 6 3.8081 3.7289 -0.8681 20 7 2.5508 4.3538 -0.4318 21 6 2.4451 5.4680 0.3572 22 1 1.4745 5.8009 0.6942 23 6 3.5855 6.1695 0.7239 24 7 4.7561 5.8276 0.2288 25 14 3.4585 7.5988 1.9198 26 1 3.7410 7.1189 3.2964 27 1 4.4450 8.6446 1.5479 28 1 2.0884 8.1693 1.8658 29 6 1.4227 3.5827 -0.9854 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.9936 -0.1855 1.8969 36 1 1.3030 -1.5794 3.9018 37 1 3.1196 -1.0819 5.4788 38 1 5.3281 2.2424 2.1806 39 1 4.0326 3.3828 2.6136 40 1 6.1814 3.6093 3.9760 41 1 4.6970 3.3820 4.9352 42 1 5.4164 -0.0785 5.6552 43 1 4.5204 1.3381 6.2493 44 1 4.1104 1.6632 -1.5017 45 1 3.4445 2.7359 -2.7764 46 1 4.3905 3.4219 0.0007 47 1 4.3841 4.4310 -1.4710 48 1 5.5529 6.3181 0.4847 49 1 1.0832 4.0263 -1.9213 50 1 0.6045 3.5387 -0.2666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033895708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:09 Heat of formation + Delta-G solvation = 34.006258 kcal Electronic energy + Delta-G solvation = -33277.669606 eV Core-core repulsion = 29273.034838 eV Total energy + Delta-G solvation = -4004.634768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.99444 -40.63633 -38.74841 -37.55142 -36.85846 -34.27753 -33.75788 -32.64655 -31.46668 -30.80305 -30.31460 -28.78103 -26.61949 -26.35113 -25.11280 -24.57029 -23.66859 -22.26957 -21.76746 -21.13180 -19.64277 -18.71681 -17.97626 -17.67439 -17.48255 -16.89524 -16.82949 -16.52252 -16.29429 -16.22101 -15.62878 -15.52217 -15.11556 -14.83846 -14.54148 -14.37977 -14.20249 -13.73239 -13.65198 -13.55153 -13.41844 -13.26343 -13.19979 -12.84300 -12.75810 -12.71885 -12.67200 -12.57175 -12.35235 -12.12552 -11.98908 -11.90917 -11.66924 -11.60494 -11.45431 -11.30571 -10.78511 -10.52954 -9.99637 -9.62121 -9.49768 -9.27157 -8.25816 -7.60197 -4.83549 0.05101 0.33707 1.40985 1.43081 1.49914 2.12723 2.23217 2.60526 2.80054 2.88667 3.56040 3.62984 3.69808 3.74967 3.85225 3.91450 4.01040 4.05451 4.08085 4.15298 4.23570 4.36399 4.36805 4.40131 4.45890 4.49387 4.56242 4.63079 4.73021 4.77390 4.80700 4.86820 4.87224 4.94981 4.97675 5.01216 5.03664 5.12309 5.15348 5.20048 5.38895 5.41127 5.47755 5.56232 5.64126 5.88026 5.96180 5.97871 6.03043 6.05518 6.42536 6.76182 7.34588 7.76142 8.05025 8.70144 9.50033 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009002 B = 0.006392 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.667760 B = 4379.238807 C = 6600.145958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.068 3.932 3 N -0.603 5.603 4 C 0.495 3.505 5 O -0.456 6.456 6 C -0.143 4.143 7 C -0.114 4.114 8 C -0.124 4.124 9 C -0.090 4.090 10 C -0.143 4.143 11 C -0.048 4.048 12 C -0.119 4.119 13 C 0.070 3.930 14 O -0.392 6.392 15 C 0.097 3.903 16 C 0.148 3.852 17 H 0.130 0.870 18 C -0.148 4.148 19 C 0.203 3.797 20 N -0.573 5.573 21 C -0.176 4.176 22 H 0.055 0.945 23 C -0.063 4.063 24 N -0.947 5.947 25 Si 0.948 3.052 26 H -0.299 1.299 27 H -0.299 1.299 28 H -0.276 1.276 29 C 0.128 3.872 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.134 0.866 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.002 0.998 47 H -0.002 1.002 48 H 0.233 0.767 49 H 0.031 0.969 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.716 -21.541 5.254 23.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.053 4.053 3 N -0.339 5.339 4 C 0.281 3.719 5 O -0.326 6.326 6 C -0.146 4.146 7 C -0.132 4.132 8 C -0.141 4.141 9 C -0.107 4.107 10 C -0.144 4.144 11 C -0.049 4.049 12 C -0.156 4.156 13 C -0.006 4.006 14 O -0.310 6.310 15 C 0.021 3.979 16 C 0.044 3.956 17 H 0.147 0.853 18 C -0.187 4.187 19 C 0.078 3.922 20 N -0.297 5.297 21 C -0.306 4.306 22 H 0.073 0.927 23 C -0.255 4.255 24 N -0.599 5.599 25 Si 0.780 3.220 26 H -0.228 1.228 27 H -0.226 1.226 28 H -0.202 1.202 29 C 0.002 3.998 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.188 0.812 36 H 0.186 0.814 37 H 0.181 0.819 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.152 0.848 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.021 0.979 47 H 0.016 0.984 48 H 0.043 0.957 49 H 0.049 0.951 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.261 -20.747 5.352 22.624 hybrid contribution 0.226 1.682 0.451 1.756 sum -7.035 -19.065 5.804 21.134 Atomic orbital electron populations 1.22213 0.94533 1.03721 1.02153 1.22616 0.95445 0.81764 1.05451 1.47815 1.64006 1.14301 1.07733 1.19158 0.79813 0.88705 0.84238 1.91512 1.45253 1.14063 1.81816 1.20206 0.98879 0.98659 0.96853 1.22329 0.99314 0.92875 0.98639 1.21499 0.98645 1.00731 0.93256 1.21508 0.93576 0.95335 1.00327 1.20457 1.00122 0.97419 0.96368 1.19585 0.95094 0.95795 0.94384 1.21161 0.97718 0.98614 0.98100 1.22498 0.97885 0.87045 0.93213 1.88005 1.33476 1.32750 1.76803 1.21720 0.87494 0.95794 0.92887 1.22181 0.95700 0.91412 0.86324 0.85255 1.23226 0.97218 0.98149 1.00128 1.20723 0.88048 0.90078 0.93376 1.44155 1.00883 1.28422 1.56244 1.18921 0.92029 0.99282 1.20402 0.92671 1.25094 0.95583 1.01737 1.03066 1.70169 0.97651 1.43451 1.48658 0.85468 0.76683 0.80195 0.79665 1.22753 1.22606 1.20175 1.21897 0.90943 0.91286 0.95711 0.88445 0.93471 0.92049 0.89494 0.87122 0.81153 0.81379 0.81911 0.93288 0.89190 0.89096 0.92529 0.84844 0.90460 0.91789 0.89912 0.97946 0.98389 0.95696 0.95133 0.95757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 9.20 71.98 0.66 -1.93 16 2 C 0.07 1.36 5.56 86.38 0.48 1.84 16 3 N -0.60 -18.86 2.58 -793.50 -2.05 -20.91 16 4 C 0.49 19.61 6.58 86.78 0.57 20.18 16 5 O -0.46 -23.02 5.98 -3.88 -0.02 -23.04 16 6 C -0.14 -4.82 5.56 -20.04 -0.11 -4.93 16 7 C -0.11 -2.66 7.45 22.49 0.17 -2.49 16 8 C -0.12 -2.17 10.03 22.19 0.22 -1.95 16 9 C -0.09 -1.70 9.66 22.39 0.22 -1.48 16 10 C -0.14 -3.89 5.80 -19.88 -0.12 -4.01 16 11 C -0.05 -1.70 5.80 -19.59 -0.11 -1.82 16 12 C -0.12 -5.08 5.15 29.84 0.15 -4.93 16 13 C 0.07 2.59 6.85 71.97 0.49 3.08 16 14 O -0.39 -12.80 10.80 -148.98 -1.61 -14.41 16 15 C 0.10 2.33 6.66 71.23 0.47 2.81 16 16 C 0.15 4.88 3.72 46.38 0.17 5.05 16 17 H 0.13 3.09 8.01 -2.39 -0.02 3.07 16 18 C -0.15 -5.64 6.52 31.79 0.21 -5.44 16 19 C 0.20 10.69 4.25 86.73 0.37 11.06 16 20 N -0.57 -30.75 1.73 -691.95 -1.19 -31.95 16 21 C -0.18 -10.58 8.69 84.03 0.73 -9.84 16 22 H 0.06 3.32 7.83 -2.91 -0.02 3.30 16 23 C -0.06 -3.87 5.46 84.86 0.46 -3.41 16 24 N -0.95 -60.88 10.41 21.65 0.23 -60.65 16 25 Si 0.95 50.25 29.56 68.60 2.03 52.28 16 26 H -0.30 -15.89 7.11 99.48 0.71 -15.18 16 27 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 28 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 29 C 0.13 5.42 6.16 86.86 0.53 5.95 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.87 7.23 -2.39 -0.02 0.85 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 2.12 3.75 -3.87 -0.01 2.10 16 35 H 0.17 3.17 3.19 -2.91 -0.01 3.16 16 36 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 38 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.09 4.76 5.57 -2.39 -0.01 4.74 16 40 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 41 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 42 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 46 H 0.00 0.15 6.35 -2.39 -0.02 0.13 16 47 H 0.00 -0.12 7.09 -2.39 -0.02 -0.14 16 48 H 0.23 14.86 8.31 -92.71 -0.77 14.09 16 49 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -81.79 372.56 3.90 -77.89 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.94 Total: 13.04 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 5.58 Total: 7.75 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -3.02 Total: -113.51 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.63 Total: -37.45 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.03 Total: 52.28 kcal Total: -81.79 3.90 -77.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033895708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.900 kcal (2) G-P(sol) polarization free energy of solvation -81.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds