Wall clock time and date at job start Wed Apr 1 2020 02:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46509 * 109.46901 * 2 1 4 4 C 1.34779 * 119.99779 * 252.03180 * 3 2 1 5 5 O 1.21548 * 119.99717 * 185.26725 * 4 3 2 6 6 C 1.47846 * 120.00131 * 5.26220 * 4 3 2 7 7 C 1.39600 * 120.22238 * 26.66470 * 6 4 3 8 8 C 1.37760 * 119.74310 * 179.80258 * 7 6 4 9 9 C 1.38805 * 120.50788 * 0.61131 * 8 7 6 10 10 C 1.38083 * 119.99747 * 359.53628 * 9 8 7 11 11 C 1.38330 * 120.02551 * 0.16772 * 10 9 8 12 12 C 1.50773 * 121.33410 * 180.34825 * 10 9 8 13 13 C 1.52953 * 109.77744 * 342.98263 * 12 10 9 14 14 O 1.43220 * 108.45870 * 49.24856 * 13 12 10 15 15 C 1.42709 * 113.12663 * 289.23819 * 14 13 12 16 16 C 1.46495 * 119.99963 * 72.03287 * 3 2 1 17 17 H 1.08997 * 110.78580 * 15.85160 * 16 3 2 18 18 C 1.55164 * 110.71894 * 252.61326 * 16 3 2 19 19 C 1.54907 * 101.58133 * 277.13928 * 18 16 3 20 20 N 1.47415 * 104.83389 * 322.98934 * 19 18 16 21 21 C 1.36944 * 125.64974 * 204.16366 * 20 19 18 22 22 H 1.08001 * 119.99852 * 179.97438 * 21 20 19 23 23 C 1.38809 * 119.99575 * 359.95696 * 21 20 19 24 24 N 1.31618 * 120.00431 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99648 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47201 * 90.00197 * 25 23 21 27 27 H 1.48501 * 109.47039 * 210.00496 * 25 23 21 28 28 H 1.48507 * 109.47069 * 329.99895 * 25 23 21 29 29 C 1.47023 * 108.70442 * 24.13150 * 20 19 18 30 30 H 1.08997 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47417 * 300.00354 * 1 2 3 32 32 H 1.09005 * 109.47014 * 59.99910 * 1 2 3 33 33 H 1.09000 * 109.47355 * 240.00416 * 2 1 3 34 34 H 1.08994 * 109.47100 * 119.99594 * 2 1 3 35 35 H 1.08003 * 120.12966 * 0.05660 * 7 6 4 36 36 H 1.07993 * 119.74204 * 180.33508 * 8 7 6 37 37 H 1.08000 * 119.91500 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.41633 * 103.07997 * 12 10 9 39 39 H 1.08995 * 109.41878 * 222.88844 * 12 10 9 40 40 H 1.08997 * 109.64245 * 168.93453 * 13 12 10 41 41 H 1.08994 * 109.64012 * 289.34968 * 13 12 10 42 42 H 1.09004 * 109.32914 * 172.07832 * 15 14 13 43 43 H 1.08999 * 109.33976 * 291.57916 * 15 14 13 44 44 H 1.08997 * 111.00536 * 159.06178 * 18 16 3 45 45 H 1.09001 * 111.03434 * 35.22800 * 18 16 3 46 46 H 1.08996 * 110.36430 * 204.14562 * 19 18 16 47 47 H 1.09009 * 110.45998 * 81.87760 * 19 18 16 48 48 H 0.96996 * 119.99930 * 179.97438 * 24 23 21 49 49 H 1.08994 * 109.88805 * 118.35687 * 29 20 19 50 50 H 1.08998 * 109.88056 * 239.52293 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.5824 1.8966 -1.1103 5 8 3.0736 3.0081 -1.0826 6 6 2.6039 1.1099 -2.3619 7 6 1.6258 0.1429 -2.6009 8 6 1.6529 -0.5816 -3.7723 9 6 2.6524 -0.3663 -4.7110 10 6 3.6242 0.5867 -4.4786 11 6 3.6041 1.3248 -3.3088 12 6 4.7191 0.8508 -5.4809 13 6 4.8103 -0.3149 -6.4669 14 8 3.4944 -0.6000 -6.9550 15 6 2.6479 -1.1932 -5.9710 16 6 1.8935 2.2023 1.2068 17 1 1.6846 1.5809 2.0776 18 6 0.7928 3.2809 1.0255 19 6 1.5661 4.3904 0.2701 20 7 2.9184 4.3743 0.8568 21 6 3.7963 5.4252 0.8674 22 1 4.7682 5.3123 1.3248 23 6 3.4373 6.6353 0.2899 24 7 2.2529 6.7729 -0.2674 25 14 4.6352 8.0687 0.3038 26 1 5.4790 8.0203 -0.9172 27 1 3.8783 9.3460 0.3322 28 1 5.5004 7.9791 1.5074 29 6 3.1681 3.0434 1.4293 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 0.8485 -0.0337 -1.8721 36 1 0.8932 -1.3259 -3.9596 37 1 4.3652 2.0695 -3.1286 38 1 4.4986 1.7693 -6.0249 39 1 5.6698 0.9592 -4.9590 40 1 5.4583 -0.0409 -7.2994 41 1 5.2147 -1.1917 -5.9612 42 1 1.6311 -1.2540 -6.3591 43 1 3.0059 -2.1975 -5.7449 44 1 0.4360 3.6410 1.9904 45 1 -0.0323 2.9005 0.4234 46 1 1.0938 5.3593 0.4320 47 1 1.6120 4.1649 -0.7954 48 1 2.0019 7.6187 -0.6705 49 1 4.0136 2.5755 0.9250 50 1 3.3727 3.1313 2.4963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033899787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:50 Heat of formation + Delta-G solvation = 30.293450 kcal Electronic energy + Delta-G solvation = -31769.501595 eV Core-core repulsion = 27764.705827 eV Total energy + Delta-G solvation = -4004.795768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.81143 -39.74668 -37.65508 -36.13753 -35.58410 -33.20054 -32.41333 -31.48723 -30.34066 -29.43737 -28.91189 -27.27290 -25.94603 -24.34031 -24.08911 -23.19900 -22.55836 -21.36188 -20.33761 -19.88420 -18.34318 -17.14754 -16.96197 -16.55248 -16.38524 -15.98738 -15.56693 -15.32668 -14.80361 -14.58612 -14.43229 -14.25140 -13.74183 -13.69069 -13.55690 -13.17537 -13.09913 -12.98454 -12.69250 -12.32118 -12.27339 -12.04050 -11.88043 -11.62567 -11.55758 -11.35296 -11.17783 -10.99018 -10.83948 -10.77540 -10.70047 -10.65433 -9.96960 -9.94755 -9.87211 -9.61629 -9.34877 -8.96858 -8.80114 -8.53887 -8.44510 -7.90207 -6.45857 -5.37558 -2.73743 0.93147 1.29305 3.14070 3.33718 3.53702 3.57925 3.59662 3.60718 3.91064 4.45247 4.48557 4.64638 4.70150 4.71549 4.85675 4.92347 4.96574 5.07671 5.14741 5.15471 5.23575 5.34922 5.39602 5.44070 5.52416 5.61125 5.62204 5.66807 5.70271 5.73651 5.76478 5.85505 5.90113 5.94775 6.06109 6.14689 6.24648 6.37093 6.38730 6.44467 6.58218 6.68003 6.78499 6.81959 6.86380 6.89501 7.28514 7.81637 7.88158 7.97123 8.13256 8.63963 8.87655 9.50518 10.12550 10.80061 11.66474 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011398 B = 0.003718 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.960378 B = 7529.585756 C = 9404.144575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.083 3.917 3 N -0.604 5.604 4 C 0.520 3.480 5 O -0.440 6.440 6 C -0.111 4.111 7 C -0.120 4.120 8 C -0.123 4.123 9 C -0.110 4.110 10 C -0.081 4.081 11 C -0.062 4.062 12 C -0.116 4.116 13 C 0.060 3.940 14 O -0.376 6.376 15 C 0.102 3.898 16 C 0.137 3.863 17 H 0.082 0.918 18 C -0.160 4.160 19 C 0.159 3.841 20 N -0.577 5.577 21 C -0.200 4.200 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.907 3.093 26 H -0.293 1.293 27 H -0.293 1.293 28 H -0.284 1.284 29 C 0.141 3.859 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.154 0.846 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.094 0.906 47 H 0.029 0.971 48 H 0.246 0.754 49 H 0.022 0.978 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.334 -21.884 -7.196 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.040 4.040 3 N -0.340 5.340 4 C 0.306 3.694 5 O -0.309 6.309 6 C -0.114 4.114 7 C -0.137 4.137 8 C -0.141 4.141 9 C -0.111 4.111 10 C -0.081 4.081 11 C -0.081 4.081 12 C -0.153 4.153 13 C -0.017 4.017 14 O -0.294 6.294 15 C 0.025 3.975 16 C 0.034 3.966 17 H 0.100 0.900 18 C -0.199 4.199 19 C 0.035 3.965 20 N -0.302 5.302 21 C -0.329 4.329 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.572 5.572 25 Si 0.739 3.261 26 H -0.221 1.221 27 H -0.220 1.220 28 H -0.210 1.210 29 C 0.014 3.986 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.171 0.829 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.123 0.877 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.112 0.888 47 H 0.047 0.953 48 H 0.057 0.943 49 H 0.040 0.960 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.069 -20.973 -7.427 22.345 hybrid contribution 0.586 0.589 0.280 0.877 sum -1.483 -20.383 -7.147 21.651 Atomic orbital electron populations 1.22327 0.96238 1.01966 1.03101 1.22151 0.94297 0.83883 1.03670 1.47716 1.61418 1.12557 1.12310 1.18358 0.81186 0.86930 0.82937 1.91224 1.39980 1.16670 1.83046 1.20191 0.97140 0.97797 0.96282 1.22174 0.99246 0.94714 0.97582 1.20883 0.98452 1.00978 0.93795 1.20364 0.95696 0.97885 0.97157 1.19396 0.96789 0.96569 0.95376 1.21214 0.97806 0.97322 0.91716 1.21136 0.97596 1.00332 0.96244 1.22631 0.84574 0.96631 0.97839 1.88070 1.23231 1.82006 1.36117 1.21442 0.95835 0.94196 0.85989 1.22045 0.97879 0.91631 0.85093 0.90024 1.23538 0.96952 0.98279 1.01179 1.21985 0.83992 0.96381 0.94188 1.44135 1.14188 1.06237 1.65611 1.18974 0.95387 0.88742 1.29780 0.91206 1.24654 0.97236 0.97772 1.01291 1.69825 1.19327 1.23983 1.44075 0.86166 0.80039 0.82468 0.77432 1.22070 1.21979 1.21021 1.21354 0.93924 0.87957 0.95379 0.91692 0.91490 0.91814 0.88317 0.91438 0.82883 0.85630 0.84756 0.89387 0.89439 0.88249 0.92609 0.87712 0.91729 0.91741 0.92576 0.88804 0.95287 0.94327 0.96048 0.96339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 9.12 37.16 0.34 -1.34 16 2 C 0.08 0.93 5.57 -4.04 -0.02 0.91 16 3 N -0.60 -9.77 2.57 -165.13 -0.42 -10.20 16 4 C 0.52 9.98 6.52 -12.33 -0.08 9.90 16 5 O -0.44 -10.89 10.17 5.32 0.05 -10.83 16 6 C -0.11 -1.76 5.49 -105.03 -0.58 -2.34 16 7 C -0.12 -1.47 7.43 -39.25 -0.29 -1.77 16 8 C -0.12 -1.30 9.65 -39.55 -0.38 -1.68 16 9 C -0.11 -1.26 5.81 -104.47 -0.61 -1.86 16 10 C -0.08 -1.05 5.77 -104.61 -0.60 -1.66 16 11 C -0.06 -0.96 9.22 -39.12 -0.36 -1.32 16 12 C -0.12 -1.23 6.00 -27.87 -0.17 -1.40 16 13 C 0.06 0.54 6.84 37.13 0.25 0.79 16 14 O -0.38 -4.08 10.80 -35.23 -0.38 -4.46 16 15 C 0.10 0.93 6.66 36.01 0.24 1.17 16 16 C 0.14 2.46 3.39 -66.10 -0.22 2.23 16 17 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 18 C -0.16 -3.18 6.71 -24.58 -0.16 -3.35 16 19 C 0.16 4.17 4.93 -2.54 -0.01 4.16 16 20 N -0.58 -15.81 2.20 -170.08 -0.38 -16.18 16 21 C -0.20 -5.99 10.27 -15.06 -0.15 -6.14 16 22 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 23 C -0.02 -0.45 5.49 -17.43 -0.10 -0.55 16 24 N -0.92 -28.84 10.09 55.49 0.56 -28.28 16 25 Si 0.91 23.64 29.55 -169.99 -5.02 18.62 16 26 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 27 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 28 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 29 C 0.14 3.18 5.98 -3.06 -0.02 3.17 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.68 8.00 -51.93 -0.42 0.27 16 32 H 0.06 0.66 6.79 -51.93 -0.35 0.31 16 33 H 0.10 1.03 4.20 -51.93 -0.22 0.82 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.15 1.63 2.77 -52.48 -0.15 1.48 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.13 2.27 7.87 -52.49 -0.41 1.85 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.09 2.78 5.87 -51.93 -0.30 2.48 16 47 H 0.03 0.85 5.66 -51.92 -0.29 0.56 16 48 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.02 0.52 7.04 -51.93 -0.37 0.15 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -36.32 377.47 -10.37 -46.69 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.54 Total: 0.04 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.93 Total: -1.08 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.24 Total: -54.66 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.33 Total: -15.30 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.02 Total: 18.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.32 -10.37 -46.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033899787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.987 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds