Wall clock time and date at job start Wed Apr 1 2020 02:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46509 * 109.46901 * 2 1 4 4 C 1.34779 * 119.99779 * 252.03180 * 3 2 1 5 5 O 1.21548 * 119.99717 * 185.26725 * 4 3 2 6 6 C 1.47846 * 120.00131 * 5.26220 * 4 3 2 7 7 C 1.39600 * 120.22238 * 26.66470 * 6 4 3 8 8 C 1.37760 * 119.74310 * 179.80258 * 7 6 4 9 9 C 1.38805 * 120.50788 * 0.61131 * 8 7 6 10 10 C 1.38083 * 119.99747 * 359.53628 * 9 8 7 11 11 C 1.38330 * 120.02551 * 0.16772 * 10 9 8 12 12 C 1.50773 * 121.33410 * 180.34825 * 10 9 8 13 13 C 1.52953 * 109.77744 * 342.98263 * 12 10 9 14 14 O 1.43220 * 108.45870 * 49.24856 * 13 12 10 15 15 C 1.42709 * 113.12663 * 289.23819 * 14 13 12 16 16 C 1.46495 * 119.99963 * 72.03287 * 3 2 1 17 17 H 1.08997 * 110.78580 * 15.85160 * 16 3 2 18 18 C 1.55164 * 110.71894 * 252.61326 * 16 3 2 19 19 C 1.54907 * 101.58133 * 277.13928 * 18 16 3 20 20 N 1.47415 * 104.83389 * 322.98934 * 19 18 16 21 21 C 1.36944 * 125.64974 * 204.16366 * 20 19 18 22 22 H 1.08001 * 119.99852 * 179.97438 * 21 20 19 23 23 C 1.38809 * 119.99575 * 359.95696 * 21 20 19 24 24 N 1.31618 * 120.00431 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99648 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47201 * 90.00197 * 25 23 21 27 27 H 1.48501 * 109.47039 * 210.00496 * 25 23 21 28 28 H 1.48507 * 109.47069 * 329.99895 * 25 23 21 29 29 C 1.47023 * 108.70442 * 24.13150 * 20 19 18 30 30 H 1.08997 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47417 * 300.00354 * 1 2 3 32 32 H 1.09005 * 109.47014 * 59.99910 * 1 2 3 33 33 H 1.09000 * 109.47355 * 240.00416 * 2 1 3 34 34 H 1.08994 * 109.47100 * 119.99594 * 2 1 3 35 35 H 1.08003 * 120.12966 * 0.05660 * 7 6 4 36 36 H 1.07993 * 119.74204 * 180.33508 * 8 7 6 37 37 H 1.08000 * 119.91500 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.41633 * 103.07997 * 12 10 9 39 39 H 1.08995 * 109.41878 * 222.88844 * 12 10 9 40 40 H 1.08997 * 109.64245 * 168.93453 * 13 12 10 41 41 H 1.08994 * 109.64012 * 289.34968 * 13 12 10 42 42 H 1.09004 * 109.32914 * 172.07832 * 15 14 13 43 43 H 1.08999 * 109.33976 * 291.57916 * 15 14 13 44 44 H 1.08997 * 111.00536 * 159.06178 * 18 16 3 45 45 H 1.09001 * 111.03434 * 35.22800 * 18 16 3 46 46 H 1.08996 * 110.36430 * 204.14562 * 19 18 16 47 47 H 1.09009 * 110.45998 * 81.87760 * 19 18 16 48 48 H 0.96996 * 119.99930 * 179.97438 * 24 23 21 49 49 H 1.08994 * 109.88805 * 118.35687 * 29 20 19 50 50 H 1.08998 * 109.88056 * 239.52293 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.5824 1.8966 -1.1103 5 8 3.0736 3.0081 -1.0826 6 6 2.6039 1.1099 -2.3619 7 6 1.6258 0.1429 -2.6009 8 6 1.6529 -0.5816 -3.7723 9 6 2.6524 -0.3663 -4.7110 10 6 3.6242 0.5867 -4.4786 11 6 3.6041 1.3248 -3.3088 12 6 4.7191 0.8508 -5.4809 13 6 4.8103 -0.3149 -6.4669 14 8 3.4944 -0.6000 -6.9550 15 6 2.6479 -1.1932 -5.9710 16 6 1.8935 2.2023 1.2068 17 1 1.6846 1.5809 2.0776 18 6 0.7928 3.2809 1.0255 19 6 1.5661 4.3904 0.2701 20 7 2.9184 4.3743 0.8568 21 6 3.7963 5.4252 0.8674 22 1 4.7682 5.3123 1.3248 23 6 3.4373 6.6353 0.2899 24 7 2.2529 6.7729 -0.2674 25 14 4.6352 8.0687 0.3038 26 1 5.4790 8.0203 -0.9172 27 1 3.8783 9.3460 0.3322 28 1 5.5004 7.9791 1.5074 29 6 3.1681 3.0434 1.4293 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 0.8485 -0.0337 -1.8721 36 1 0.8932 -1.3259 -3.9596 37 1 4.3652 2.0695 -3.1286 38 1 4.4986 1.7693 -6.0249 39 1 5.6698 0.9592 -4.9590 40 1 5.4583 -0.0409 -7.2994 41 1 5.2147 -1.1917 -5.9612 42 1 1.6311 -1.2540 -6.3591 43 1 3.0059 -2.1975 -5.7449 44 1 0.4360 3.6410 1.9904 45 1 -0.0323 2.9005 0.4234 46 1 1.0938 5.3593 0.4320 47 1 1.6120 4.1649 -0.7954 48 1 2.0019 7.6187 -0.6705 49 1 4.0136 2.5755 0.9250 50 1 3.3727 3.1313 2.4963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033899787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:49 Heat of formation + Delta-G solvation = 7.020352 kcal Electronic energy + Delta-G solvation = -31770.510792 eV Core-core repulsion = 27764.705827 eV Total energy + Delta-G solvation = -4005.804965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.98884 -40.86312 -38.76769 -37.69988 -36.93602 -34.46267 -33.92670 -32.67738 -31.62750 -30.77466 -30.32007 -28.94794 -27.08972 -26.32536 -24.94579 -24.19874 -23.59532 -22.53177 -22.02010 -21.42648 -19.66822 -18.81012 -18.08655 -17.92564 -17.43295 -16.99649 -16.80652 -16.61201 -16.34668 -15.97821 -15.68631 -15.60149 -15.24167 -14.89481 -14.62329 -14.49104 -14.16619 -14.00152 -13.82577 -13.72040 -13.46567 -13.37152 -13.27288 -13.01701 -12.88305 -12.81807 -12.59774 -12.49411 -12.18917 -12.04813 -12.03919 -12.00329 -11.72671 -11.66518 -11.52432 -11.28744 -10.80676 -10.69767 -10.33864 -9.81763 -9.55797 -9.40447 -8.65895 -7.66687 -5.04787 -0.12828 0.29845 1.39146 1.43511 1.51202 1.93134 2.07221 2.52903 2.73765 2.92470 3.39515 3.51553 3.60828 3.71368 3.83852 3.84863 3.94297 3.99292 4.02774 4.18592 4.22607 4.28272 4.31841 4.39246 4.42985 4.46105 4.54915 4.59429 4.70479 4.72341 4.80272 4.81583 4.84883 4.90053 4.95308 4.98816 5.03196 5.05991 5.07027 5.18557 5.26573 5.35461 5.45145 5.46819 5.48220 5.82284 5.85991 5.89705 5.96058 6.12214 6.41702 6.58052 7.21861 7.47846 7.94088 8.59073 9.35039 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011398 B = 0.003718 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.960378 B = 7529.585756 C = 9404.144575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.076 3.924 3 N -0.598 5.598 4 C 0.514 3.486 5 O -0.515 6.515 6 C -0.138 4.138 7 C -0.112 4.112 8 C -0.110 4.110 9 C -0.106 4.106 10 C -0.092 4.092 11 C -0.088 4.088 12 C -0.119 4.119 13 C 0.063 3.937 14 O -0.394 6.394 15 C 0.099 3.901 16 C 0.151 3.849 17 H 0.132 0.868 18 C -0.142 4.142 19 C 0.166 3.834 20 N -0.594 5.594 21 C -0.217 4.217 22 H 0.067 0.933 23 C -0.074 4.074 24 N -0.949 5.949 25 Si 0.974 3.026 26 H -0.297 1.297 27 H -0.290 1.290 28 H -0.268 1.268 29 C 0.136 3.864 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.127 0.873 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.052 0.948 47 H -0.008 1.008 48 H 0.239 0.761 49 H 0.000 1.000 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.875 -26.196 -7.263 27.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.045 4.045 3 N -0.333 5.333 4 C 0.302 3.698 5 O -0.390 6.390 6 C -0.141 4.141 7 C -0.130 4.130 8 C -0.128 4.128 9 C -0.107 4.107 10 C -0.092 4.092 11 C -0.108 4.108 12 C -0.156 4.156 13 C -0.013 4.013 14 O -0.312 6.312 15 C 0.023 3.977 16 C 0.047 3.953 17 H 0.150 0.850 18 C -0.182 4.182 19 C 0.041 3.959 20 N -0.318 5.318 21 C -0.347 4.347 22 H 0.085 0.915 23 C -0.266 4.266 24 N -0.601 5.601 25 Si 0.803 3.197 26 H -0.225 1.225 27 H -0.217 1.217 28 H -0.192 1.192 29 C 0.010 3.990 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.192 0.808 36 H 0.190 0.810 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.135 0.865 41 H 0.090 0.910 42 H 0.145 0.855 43 H 0.111 0.889 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.070 0.930 47 H 0.010 0.990 48 H 0.049 0.951 49 H 0.018 0.982 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.628 -25.369 -7.462 26.691 hybrid contribution 1.103 1.812 0.236 2.134 sum -2.525 -23.557 -7.226 24.770 Atomic orbital electron populations 1.22303 0.94221 1.04203 1.02462 1.22535 0.95809 0.80765 1.05410 1.47837 1.60366 1.14305 1.10746 1.19004 0.79906 0.86301 0.84563 1.91186 1.43529 1.19926 1.84408 1.20054 0.99189 0.99667 0.95231 1.22384 0.98265 0.93426 0.98886 1.21376 0.98570 1.00668 0.92174 1.20824 0.94648 0.96835 0.98372 1.19625 0.98154 0.96806 0.94657 1.21100 0.97978 0.98029 0.93647 1.21200 0.97177 1.00950 0.96310 1.22724 0.84421 0.96169 0.97965 1.88053 1.23984 1.82256 1.36952 1.21724 0.97004 0.94565 0.84425 1.21958 0.94107 0.91678 0.87542 0.85010 1.23338 0.97244 0.96597 1.00987 1.21647 0.84369 0.96597 0.93261 1.44368 1.14371 1.07509 1.65554 1.19337 0.95887 0.90018 1.29465 0.91488 1.25499 0.99107 1.00449 1.01531 1.70134 1.20989 1.23994 1.44972 0.85128 0.77985 0.79015 0.77580 1.22474 1.21659 1.19242 1.21523 0.95894 0.86655 0.94962 0.87975 0.91765 0.92852 0.87413 0.88981 0.80776 0.80977 0.88386 0.90673 0.89182 0.86499 0.91010 0.85515 0.88942 0.90475 0.90517 0.92985 0.99023 0.95148 0.98228 0.95325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 9.12 71.98 0.66 -1.83 16 2 C 0.08 1.42 5.57 86.38 0.48 1.90 16 3 N -0.60 -18.84 2.57 -794.62 -2.04 -20.88 16 4 C 0.51 20.73 6.52 86.79 0.57 21.29 16 5 O -0.52 -27.83 10.17 -3.87 -0.04 -27.87 16 6 C -0.14 -4.54 5.49 -20.13 -0.11 -4.65 16 7 C -0.11 -2.52 7.43 22.49 0.17 -2.35 16 8 C -0.11 -1.90 9.65 22.29 0.22 -1.69 16 9 C -0.11 -2.14 5.81 -19.76 -0.11 -2.26 16 10 C -0.09 -2.42 5.77 -19.86 -0.11 -2.54 16 11 C -0.09 -2.99 9.22 22.57 0.21 -2.78 16 12 C -0.12 -2.61 6.00 29.86 0.18 -2.43 16 13 C 0.06 1.02 6.84 71.97 0.49 1.52 16 14 O -0.39 -7.50 10.80 -148.98 -1.61 -9.11 16 15 C 0.10 1.41 6.66 71.24 0.47 1.88 16 16 C 0.15 5.23 3.39 46.18 0.16 5.39 16 17 H 0.13 3.34 8.03 -2.39 -0.02 3.32 16 18 C -0.14 -5.61 6.71 31.99 0.21 -5.39 16 19 C 0.17 9.23 4.93 86.86 0.43 9.65 16 20 N -0.59 -34.31 2.20 -692.02 -1.53 -35.83 16 21 C -0.22 -13.74 10.27 84.03 0.86 -12.87 16 22 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 23 C -0.07 -4.72 5.49 84.86 0.47 -4.25 16 24 N -0.95 -63.10 10.09 21.65 0.22 -62.88 16 25 Si 0.97 50.91 29.55 68.60 2.03 52.94 16 26 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 27 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 28 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 29 C 0.14 6.31 5.98 86.73 0.52 6.82 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 1.00 8.00 -2.39 -0.02 0.98 16 32 H 0.05 0.90 6.79 -2.38 -0.02 0.88 16 33 H 0.11 1.88 4.20 -2.39 -0.01 1.87 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.18 3.08 2.77 -2.91 -0.01 3.07 16 36 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.10 3.88 7.87 -2.91 -0.02 3.86 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 0.94 8.07 -2.39 -0.02 0.92 16 42 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.05 3.30 5.87 -2.39 -0.01 3.29 16 47 H -0.01 -0.50 5.66 -2.38 -0.01 -0.51 16 48 H 0.24 15.43 8.31 -92.71 -0.77 14.65 16 49 H 0.00 -0.01 7.04 -2.39 -0.02 -0.03 16 50 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -89.64 377.47 3.73 -85.91 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.95 Total: 12.30 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.75 Total: 5.42 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -3.35 Total: -119.59 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.65 Total: -36.98 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.03 Total: 52.94 kcal Total: -89.64 3.73 -85.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033899787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.930 kcal (2) G-P(sol) polarization free energy of solvation -89.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds