Wall clock time and date at job start Wed Apr 1 2020 02:44:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46501 * 109.47143 * 2 1
4 4 C 1.34770 * 120.00026 * 263.42843 * 3 2 1
5 5 O 1.21284 * 119.99865 * 185.35488 * 4 3 2
6 6 C 1.50699 * 120.00330 * 5.35879 * 4 3 2
7 7 H 1.08998 * 109.34268 * 153.24246 * 6 4 3
8 8 O 1.42728 * 109.33738 * 33.56682 * 6 4 3
9 9 C 1.43215 * 113.11485 * 187.99132 * 8 6 4
10 10 C 1.52971 * 108.47619 * 70.72278 * 9 8 6
11 11 C 1.50745 * 109.76743 * 310.83748 * 10 9 8
12 12 C 1.38593 * 118.76998 * 196.77835 * 11 10 9
13 13 C 1.38064 * 120.27846 * 180.19012 * 12 11 10
14 14 C 1.38259 * 119.86796 * 359.97438 * 13 12 11
15 15 C 1.38055 * 119.88979 * 359.92449 * 14 13 12
16 16 C 1.37681 * 121.29042 * 16.97635 * 11 10 9
17 17 C 1.46501 * 119.99815 * 83.43483 * 3 2 1
18 18 H 1.09007 * 110.92003 * 356.09215 * 17 3 2
19 19 C 1.55156 * 111.00768 * 119.99921 * 17 3 2
20 20 C 1.54324 * 102.94072 * 153.57600 * 19 17 3
21 21 N 1.47017 * 107.27283 * 337.80406 * 20 19 17
22 22 C 1.36937 * 125.64560 * 178.92431 * 21 20 19
23 23 H 1.08003 * 119.99501 * 180.02562 * 22 21 20
24 24 C 1.38810 * 120.00088 * 0.02562 * 22 21 20
25 25 N 1.31615 * 120.00183 * 0.02562 * 24 22 21
26 26 Si 1.86807 * 119.99896 * 180.02562 * 24 22 21
27 27 H 1.48496 * 109.47078 * 59.99887 * 26 24 22
28 28 H 1.48501 * 109.47121 * 180.02562 * 26 24 22
29 29 H 1.48502 * 109.46904 * 300.00014 * 26 24 22
30 30 C 1.47422 * 108.70405 * 358.94197 * 21 20 19
31 31 H 1.08991 * 109.47237 * 172.76374 * 1 2 3
32 32 H 1.09000 * 109.47151 * 292.76443 * 1 2 3
33 33 H 1.09000 * 109.46934 * 52.75992 * 1 2 3
34 34 H 1.09000 * 109.46830 * 239.99749 * 2 1 3
35 35 H 1.08997 * 109.47055 * 120.00068 * 2 1 3
36 36 H 1.09005 * 109.63560 * 190.42252 * 9 8 6
37 37 H 1.09001 * 109.63544 * 311.02263 * 9 8 6
38 38 H 1.09001 * 109.42380 * 70.92811 * 10 9 8
39 39 H 1.08998 * 109.42258 * 190.74829 * 10 9 8
40 40 H 1.08004 * 119.85852 * 0.17331 * 12 11 10
41 41 H 1.08008 * 120.06637 * 180.02562 * 13 12 11
42 42 H 1.07997 * 120.05886 * 179.97438 * 14 13 12
43 43 H 1.08002 * 119.85017 * 180.02562 * 15 14 13
44 44 H 1.08998 * 110.71500 * 271.93620 * 19 17 3
45 45 H 1.08993 * 110.71813 * 35.03229 * 19 17 3
46 46 H 1.09002 * 109.88499 * 97.22794 * 20 19 17
47 47 H 1.09009 * 109.87718 * 218.38799 * 20 19 17
48 48 H 0.96998 * 119.99951 * 179.97438 * 25 24 22
49 49 H 1.08997 * 110.36911 * 265.29160 * 30 21 20
50 50 H 1.09004 * 110.36920 * 142.96480 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3689 1.9720 -1.1595
5 8 2.8639 3.0792 -1.1505
6 6 2.1458 1.2570 -2.4671
7 1 2.0250 1.9910 -3.2639
8 8 0.9647 0.4609 -2.3750
9 6 0.7735 -0.3944 -3.5076
10 6 1.8266 -1.5029 -3.4614
11 6 3.1906 -0.9012 -3.2379
12 6 4.3114 -1.6696 -3.5103
13 6 5.5757 -1.1510 -3.3131
14 6 5.7244 0.1405 -2.8423
15 6 4.6085 0.9072 -2.5727
16 6 3.3367 0.3848 -2.7684
17 6 2.1258 2.1202 1.2604
18 1 1.7413 1.5294 2.0919
19 6 3.5895 2.5628 1.5227
20 6 3.4185 3.8146 2.4089
21 7 2.0642 4.3355 2.1719
22 6 1.5114 5.4288 2.7836
23 1 0.5038 5.7319 2.5400
24 6 2.2459 6.1475 3.7168
25 7 3.4740 5.7785 4.0132
26 14 1.4914 7.6386 4.5517
27 1 0.2733 7.2265 5.2943
28 1 2.4737 8.2259 5.4980
29 1 1.1277 8.6490 3.5260
30 6 1.3999 3.4855 1.1672
31 1 -0.3633 -1.0194 -0.1294
32 1 -0.3633 0.3976 0.9476
33 1 -0.3633 0.6219 -0.8181
34 1 1.8933 -0.5139 -0.8900
35 1 1.8933 -0.5138 0.8900
36 1 -0.2232 -0.8342 -3.4703
37 1 0.8884 0.1821 -4.4255
38 1 1.5952 -2.1890 -2.6466
39 1 1.8211 -2.0477 -4.4054
40 1 4.1953 -2.6784 -3.8782
41 1 6.4468 -1.7527 -3.5269
42 1 6.7119 0.5491 -2.6865
43 1 4.7254 1.9161 -2.2053
44 1 4.1379 1.7856 2.0549
45 1 4.0897 2.8143 0.5876
46 1 3.5334 3.5443 3.4586
47 1 4.1582 4.5668 2.1345
48 1 3.9874 6.2809 4.6650
49 1 1.5197 3.9115 0.1710
50 1 0.3428 3.3703 1.4068
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001033917679.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:44:14
Heat of formation + Delta-G solvation = -26.956724 kcal
Electronic energy + Delta-G solvation = -32134.062850 eV
Core-core repulsion = 28126.784529 eV
Total energy + Delta-G solvation = -4007.278322 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.19848 -40.58584 -38.71039 -38.41043 -36.66548 -34.40426 -33.89946 -32.81317
-31.63987 -30.78487 -30.37800 -28.93036 -27.28980 -26.24051 -24.81998 -24.33514
-23.31922 -22.64030 -22.04711 -21.14292 -20.08611 -18.94929 -18.34805 -18.07723
-17.67162 -16.89075 -16.67636 -16.42367 -16.18769 -16.02999 -15.78320 -15.51644
-15.03647 -14.87292 -14.64837 -14.50085 -14.27646 -14.20226 -14.09892 -13.74357
-13.67184 -13.48194 -13.16747 -12.96515 -12.89795 -12.74701 -12.69740 -12.52772
-12.22279 -12.15715 -12.08247 -12.05784 -11.90855 -11.81780 -11.59187 -11.45236
-10.72895 -10.66765 -10.60816 -9.74343 -9.63529 -9.57884 -8.88468 -7.85565
-5.22297 0.27119 0.39619 1.41649 1.43493 1.48274 1.54350 1.93573
2.49119 2.60734 2.82011 3.31117 3.46337 3.48801 3.70027 3.77410
3.90790 3.91297 3.98638 4.10426 4.15304 4.18502 4.24494 4.27274
4.38292 4.54552 4.57406 4.60040 4.63257 4.69852 4.70830 4.75047
4.87123 4.90745 4.94518 4.99495 5.02058 5.05135 5.14197 5.19428
5.22592 5.39914 5.46553 5.55200 5.57182 5.61610 5.65177 5.67372
5.76210 5.95366 6.03661 6.16709 6.45851 7.07112 7.12766 7.74094
8.40683 9.24848
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.018908 B = 0.003122 C = 0.002876
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1480.499719 B = 8967.198114 C = 9733.981774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.108 3.892
3 N -0.583 5.583
4 C 0.524 3.476
5 O -0.564 6.564
6 C 0.128 3.872
7 H 0.093 0.907
8 O -0.358 6.358
9 C 0.045 3.955
10 C -0.111 4.111
11 C -0.068 4.068
12 C -0.117 4.117
13 C -0.110 4.110
14 C -0.132 4.132
15 C -0.127 4.127
16 C -0.126 4.126
17 C 0.149 3.851
18 H 0.109 0.891
19 C -0.138 4.138
20 C 0.198 3.802
21 N -0.622 5.622
22 C -0.247 4.247
23 H 0.080 0.920
24 C -0.067 4.067
25 N -0.952 5.952
26 Si 0.985 3.015
27 H -0.271 1.271
28 H -0.291 1.291
29 H -0.280 1.280
30 C 0.129 3.871
31 H 0.087 0.913
32 H 0.036 0.964
33 H 0.063 0.937
34 H 0.103 0.897
35 H 0.074 0.926
36 H 0.132 0.868
37 H 0.059 0.941
38 H 0.102 0.898
39 H 0.114 0.886
40 H 0.157 0.843
41 H 0.150 0.850
42 H 0.129 0.871
43 H 0.098 0.902
44 H 0.079 0.921
45 H 0.061 0.939
46 H 0.020 0.980
47 H -0.004 1.004
48 H 0.248 0.752
49 H 0.023 0.977
50 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.835 -24.835 -18.889 31.330
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.013 4.013
3 N -0.314 5.314
4 C 0.312 3.688
5 O -0.444 6.444
6 C 0.067 3.933
7 H 0.110 0.890
8 O -0.278 6.278
9 C -0.031 4.031
10 C -0.147 4.147
11 C -0.068 4.068
12 C -0.135 4.135
13 C -0.128 4.128
14 C -0.150 4.150
15 C -0.145 4.145
16 C -0.127 4.127
17 C 0.045 3.955
18 H 0.127 0.873
19 C -0.177 4.177
20 C 0.072 3.928
21 N -0.349 5.349
22 C -0.376 4.376
23 H 0.098 0.902
24 C -0.260 4.260
25 N -0.601 5.601
26 Si 0.812 3.188
27 H -0.197 1.197
28 H -0.217 1.217
29 H -0.206 1.206
30 C 0.003 3.997
31 H 0.106 0.894
32 H 0.055 0.945
33 H 0.082 0.918
34 H 0.121 0.879
35 H 0.093 0.907
36 H 0.150 0.850
37 H 0.078 0.922
38 H 0.120 0.880
39 H 0.132 0.868
40 H 0.175 0.825
41 H 0.168 0.832
42 H 0.147 0.853
43 H 0.116 0.884
44 H 0.098 0.902
45 H 0.080 0.920
46 H 0.038 0.962
47 H 0.014 0.986
48 H 0.057 0.943
49 H 0.040 0.960
50 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -2.677 -24.134 -18.567 30.567
hybrid contribution 0.411 1.753 0.563 1.887
sum -2.266 -22.381 -18.004 28.813
Atomic orbital electron populations
1.22101 0.94411 1.03226 1.01207 1.21939 0.95935 0.79737 1.03657
1.47923 1.63175 1.15229 1.05035 1.20531 0.77401 0.85152 0.85695
1.90775 1.45002 1.21305 1.87278 1.20808 0.85814 0.92563 0.94142
0.88964 1.88368 1.39754 1.56182 1.43448 1.23014 1.00917 0.90800
0.88356 1.21241 0.89487 0.98674 1.05318 1.19733 0.97512 0.91912
0.97647 1.21434 0.91231 1.00830 1.00001 1.21505 0.98832 0.94847
0.97627 1.21292 0.98390 0.95454 0.99902 1.21244 0.93271 0.99895
1.00109 1.19722 0.93449 0.95863 1.03690 1.22050 0.95424 0.92187
0.85882 0.87287 1.23025 0.96960 0.97828 0.99928 1.20743 0.85783
0.91062 0.95189 1.44625 1.12782 1.31056 1.46435 1.19432 0.98072
1.03192 1.16904 0.90208 1.25728 0.96932 1.02635 1.00672 1.70203
1.10659 1.42216 1.36996 0.85069 0.77247 0.78675 0.77811 1.19694
1.21678 1.20627 1.21864 0.94929 0.90599 0.92358 0.89420 0.94467
0.91779 0.87892 0.90722 0.85035 0.92244 0.87958 0.86813 0.82499
0.83247 0.85262 0.88372 0.90214 0.92010 0.96227 0.98587 0.94319
0.95958 0.94369
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.96 9.45 71.98 0.68 -2.28 16
2 C 0.11 2.41 5.53 86.38 0.48 2.89 16
3 N -0.58 -18.48 2.56 -790.12 -2.03 -20.50 16
4 C 0.52 18.04 5.24 87.66 0.46 18.50 16
5 O -0.56 -25.08 12.35 -3.04 -0.04 -25.12 16
6 C 0.13 3.25 2.80 29.09 0.08 3.33 16
7 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16
8 O -0.36 -6.84 4.80 -148.98 -0.71 -7.56 16
9 C 0.04 0.47 6.85 71.97 0.49 0.97 16
10 C -0.11 -0.92 5.61 29.85 0.17 -0.76 16
11 C -0.07 -1.06 5.38 -19.90 -0.11 -1.16 16
12 C -0.12 -1.52 9.67 22.31 0.22 -1.30 16
13 C -0.11 -1.67 10.05 22.23 0.22 -1.45 16
14 C -0.13 -2.77 10.05 22.23 0.22 -2.55 16
15 C -0.13 -3.34 9.11 22.38 0.20 -3.14 16
16 C -0.13 -2.87 4.70 -19.86 -0.09 -2.96 16
17 C 0.15 5.82 3.55 46.38 0.16 5.98 16
18 H 0.11 3.88 7.99 -2.38 -0.02 3.86 16
19 C -0.14 -6.08 6.33 31.78 0.20 -5.88 16
20 C 0.20 11.06 5.37 86.73 0.47 11.53 16
21 N -0.62 -36.04 3.39 -691.98 -2.35 -38.39 16
22 C -0.25 -15.16 10.28 84.03 0.86 -14.30 16
23 H 0.08 4.68 7.83 -2.91 -0.02 4.65 16
24 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16
25 N -0.95 -61.03 10.31 21.65 0.22 -60.81 16
26 Si 0.98 48.49 29.55 68.60 2.03 50.52 16
27 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16
28 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16
29 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16
30 C 0.13 6.21 6.58 86.86 0.57 6.78 16
31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16
32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16
33 H 0.06 1.41 6.26 -2.39 -0.01 1.40 16
34 H 0.10 2.03 4.35 -2.39 -0.01 2.02 16
35 H 0.07 1.51 8.11 -2.39 -0.02 1.49 16
36 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16
37 H 0.06 0.63 8.07 -2.39 -0.02 0.62 16
38 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16
39 H 0.11 0.39 8.14 -2.39 -0.02 0.38 16
40 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16
41 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16
42 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16
43 H 0.10 3.21 6.83 -2.91 -0.02 3.19 16
44 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16
45 H 0.06 2.90 6.07 -2.39 -0.01 2.88 16
46 H 0.02 1.17 7.38 -2.39 -0.02 1.15 16
47 H 0.00 -0.26 7.51 -2.38 -0.02 -0.28 16
48 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16
49 H 0.02 1.19 5.72 -2.39 -0.01 1.18 16
50 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16
Total: -1.00 -80.96 380.06 3.82 -77.14
By element:
Atomic # 1 Polarization: 13.19 SS G_CDS: 0.93 Total: 14.13 kcal
Atomic # 6 Polarization: 4.82 SS G_CDS: 5.76 Total: 10.58 kcal
Atomic # 7 Polarization: -115.55 SS G_CDS: -4.15 Total: -119.70 kcal
Atomic # 8 Polarization: -31.92 SS G_CDS: -0.75 Total: -32.67 kcal
Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal
Total: -80.96 3.82 -77.14 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033917679.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.187 kcal
(2) G-P(sol) polarization free energy of solvation -80.960 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.773 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.144 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.957 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds