Wall clock time and date at job start Wed Apr 1 2020 02:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47067 * 2 1 4 4 C 1.34774 * 119.99970 * 85.72599 * 3 2 1 5 5 O 1.21280 * 120.00374 * 186.01004 * 4 3 2 6 6 C 1.50703 * 120.00019 * 6.00615 * 4 3 2 7 7 H 1.09000 * 109.21077 * 326.51018 * 6 4 3 8 8 O 1.42724 * 109.34016 * 206.90247 * 6 4 3 9 9 C 1.43215 * 113.11870 * 187.99103 * 8 6 4 10 10 C 1.52966 * 108.48079 * 70.71722 * 9 8 6 11 11 C 1.50743 * 109.76382 * 310.83707 * 10 9 8 12 12 C 1.38596 * 118.76584 * 196.80309 * 11 10 9 13 13 C 1.38068 * 120.28143 * 180.20250 * 12 11 10 14 14 C 1.38262 * 119.85820 * 0.02562 * 13 12 11 15 15 C 1.38054 * 119.89920 * 359.90416 * 14 13 12 16 16 C 1.37908 * 121.35793 * 16.86158 * 11 10 9 17 17 C 1.46500 * 120.00048 * 265.72395 * 3 2 1 18 18 H 1.09000 * 110.88955 * 10.15136 * 17 3 2 19 19 C 1.55159 * 111.00153 * 246.27322 * 17 3 2 20 20 C 1.54320 * 102.94365 * 277.42670 * 19 17 3 21 21 N 1.47023 * 107.27343 * 337.80951 * 20 19 17 22 22 C 1.36936 * 125.64934 * 178.98602 * 21 20 19 23 23 H 1.08001 * 119.99797 * 185.14602 * 22 21 20 24 24 C 1.38815 * 120.00040 * 5.14610 * 22 21 20 25 25 N 1.31625 * 120.00044 * 5.18486 * 24 22 21 26 26 Si 1.86797 * 120.00078 * 185.18312 * 24 22 21 27 27 H 1.48506 * 109.46885 * 94.99877 * 26 24 22 28 28 H 1.48497 * 109.47030 * 214.99940 * 26 24 22 29 29 H 1.48500 * 109.47066 * 335.00099 * 26 24 22 30 30 C 1.47423 * 108.69931 * 358.94059 * 21 20 19 31 31 H 1.09003 * 109.47143 * 59.99661 * 1 2 3 32 32 H 1.08999 * 109.46795 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46850 * 299.99848 * 1 2 3 34 34 H 1.09004 * 109.46850 * 240.00152 * 2 1 3 35 35 H 1.08998 * 109.47605 * 120.00227 * 2 1 3 36 36 H 1.09001 * 109.63868 * 190.41495 * 9 8 6 37 37 H 1.09006 * 109.63374 * 311.01531 * 9 8 6 38 38 H 1.08998 * 109.42338 * 70.92539 * 10 9 8 39 39 H 1.08995 * 109.42338 * 190.75293 * 10 9 8 40 40 H 1.08000 * 119.86361 * 0.21129 * 12 11 10 41 41 H 1.08000 * 120.07309 * 179.97438 * 13 12 11 42 42 H 1.08006 * 120.04828 * 179.97438 * 14 13 12 43 43 H 1.07996 * 119.84862 * 179.97438 * 15 14 13 44 44 H 1.08997 * 110.72373 * 35.79340 * 19 17 3 45 45 H 1.09014 * 110.71776 * 158.88610 * 19 17 3 46 46 H 1.08999 * 109.88366 * 97.22825 * 20 19 17 47 47 H 1.09008 * 109.88123 * 218.23430 * 20 19 17 48 48 H 0.96992 * 120.00215 * 180.02562 * 25 24 22 49 49 H 1.09005 * 110.36807 * 265.28915 * 30 21 20 50 50 H 1.08994 * 110.36496 * 142.97010 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1609 2.0455 1.1639 5 8 2.4599 3.2209 1.1587 6 6 1.9488 1.3279 2.4720 7 1 1.1734 0.5725 2.3450 8 8 1.5362 2.2667 3.4647 9 6 1.4864 1.7069 4.7820 10 6 2.9188 1.4547 5.2560 11 6 3.6858 0.7150 4.1898 12 6 4.8695 0.0830 4.5368 13 6 5.5993 -0.5998 3.5842 14 6 5.1477 -0.6529 2.2785 15 6 3.9680 -0.0249 1.9323 16 6 3.2332 0.6593 2.8883 17 6 2.3517 2.0403 -1.2652 18 1 2.0173 1.4439 -2.1140 19 6 3.8728 2.3328 -1.3559 20 6 4.0193 3.6496 -0.5647 21 7 2.7018 4.3021 -0.5550 22 6 2.4028 5.4874 0.0621 23 1 1.3834 5.8436 0.0819 24 6 3.4098 6.2310 0.6620 25 7 4.6647 5.8501 0.5504 26 14 2.9838 7.7723 1.6276 27 1 2.8609 7.4353 3.0687 28 1 4.0565 8.7828 1.4452 29 1 1.6954 8.3238 1.1366 30 6 1.7564 3.4693 -1.3205 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.9944 2.4056 5.4586 37 1 0.9369 0.7658 4.7594 38 1 3.4068 2.4081 5.4582 39 1 2.8989 0.8580 6.1680 40 1 5.2224 0.1247 5.5566 41 1 6.5214 -1.0908 3.8582 42 1 5.7164 -1.1859 1.5308 43 1 3.6162 -0.0665 0.9121 44 1 4.4477 1.5347 -0.8864 45 1 4.1784 2.4672 -2.3937 46 1 4.3344 3.4353 0.4566 47 1 4.7515 4.2946 -1.0506 48 1 5.3683 6.3695 0.9699 49 1 1.6957 3.8153 -2.3524 50 1 0.7712 3.4882 -0.8547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033917680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:18 Heat of formation + Delta-G solvation = 38.162182 kcal Electronic energy + Delta-G solvation = -33444.043688 eV Core-core repulsion = 29439.589134 eV Total energy + Delta-G solvation = -4004.454554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.77436 -39.22759 -37.46104 -35.91495 -35.31840 -32.91424 -32.16269 -31.52968 -29.94430 -29.43167 -28.69726 -27.21302 -25.98869 -24.14223 -23.82064 -23.09739 -22.59955 -20.77455 -20.00501 -19.75273 -18.09932 -17.39157 -16.75670 -16.47706 -16.27143 -15.64034 -15.42228 -14.80591 -14.75707 -14.45031 -14.25626 -13.72885 -13.68561 -13.56754 -13.52046 -13.31084 -13.04566 -12.69739 -12.45159 -12.23532 -11.90378 -11.79859 -11.77276 -11.59949 -11.59053 -11.37632 -11.17156 -10.90644 -10.64125 -10.62767 -10.58507 -10.53448 -9.90176 -9.83827 -9.63409 -9.48811 -9.29889 -8.92886 -8.63234 -8.43498 -8.12650 -7.78135 -6.13777 -5.29949 -2.55010 1.35589 1.43301 3.17381 3.45097 3.62883 3.68144 3.68807 3.82507 4.19128 4.65832 4.72520 4.83833 4.85390 4.89883 5.00777 5.08538 5.11586 5.19673 5.23535 5.31430 5.42851 5.44302 5.49214 5.54865 5.63649 5.68079 5.74117 5.78671 5.79335 5.83806 5.91912 5.98848 6.03372 6.12434 6.13439 6.22033 6.31502 6.47585 6.55032 6.59509 6.61219 6.68322 6.72582 6.84275 7.03389 7.18942 7.37924 7.88479 7.99269 8.03928 8.18505 8.66025 9.20977 9.61769 10.24482 10.90215 11.82755 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009769 B = 0.005629 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.487218 B = 4973.158309 C = 5959.590583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.612 5.612 4 C 0.472 3.528 5 O -0.375 6.375 6 C 0.114 3.886 7 H 0.077 0.923 8 O -0.341 6.341 9 C 0.059 3.941 10 C -0.117 4.117 11 C -0.066 4.066 12 C -0.121 4.121 13 C -0.117 4.117 14 C -0.122 4.122 15 C -0.110 4.110 16 C -0.101 4.101 17 C 0.135 3.865 18 H 0.083 0.917 19 C -0.160 4.160 20 C 0.189 3.811 21 N -0.564 5.564 22 C -0.181 4.181 23 H 0.065 0.935 24 C -0.010 4.010 25 N -0.925 5.925 26 Si 0.900 3.100 27 H -0.295 1.295 28 H -0.297 1.297 29 H -0.286 1.286 30 C 0.131 3.869 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.133 0.867 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.041 0.959 47 H 0.043 0.957 48 H 0.243 0.757 49 H 0.022 0.978 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 -19.823 4.118 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.025 4.025 3 N -0.353 5.353 4 C 0.254 3.746 5 O -0.237 6.237 6 C 0.052 3.948 7 H 0.095 0.905 8 O -0.259 6.259 9 C -0.018 4.018 10 C -0.154 4.154 11 C -0.066 4.066 12 C -0.139 4.139 13 C -0.135 4.135 14 C -0.140 4.140 15 C -0.128 4.128 16 C -0.101 4.101 17 C 0.031 3.969 18 H 0.101 0.899 19 C -0.200 4.200 20 C 0.065 3.935 21 N -0.289 5.289 22 C -0.310 4.310 23 H 0.083 0.917 24 C -0.205 4.205 25 N -0.575 5.575 26 Si 0.732 3.268 27 H -0.223 1.223 28 H -0.224 1.224 29 H -0.212 1.212 30 C 0.004 3.996 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.150 0.850 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.039 0.961 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.917 -18.694 4.219 19.561 hybrid contribution -0.045 0.275 0.816 0.862 sum -3.962 -18.419 5.035 19.501 Atomic orbital electron populations 1.22266 0.96368 1.01535 1.02857 1.21635 0.94317 0.84012 1.02568 1.47819 1.68635 1.13042 1.05760 1.19991 0.81926 0.89083 0.83644 1.91579 1.36385 1.11470 1.84224 1.20941 0.93052 0.90893 0.89920 0.90527 1.88272 1.87221 1.35156 1.15214 1.22643 0.95238 0.99022 0.84917 1.21150 0.96530 1.00972 0.96725 1.19457 0.95765 0.97541 0.93811 1.20996 0.94695 0.98565 0.99621 1.21078 0.99483 0.99479 0.93447 1.21051 0.96323 1.00225 0.96367 1.21338 0.95097 0.96919 0.99464 1.19856 0.97525 0.99028 0.93726 1.22312 0.96041 0.94638 0.83953 0.89932 1.23387 0.94729 1.01085 1.00757 1.21079 0.88140 0.87412 0.96907 1.44072 1.04950 1.21358 1.58511 1.18759 0.92632 0.93393 1.26173 0.91705 1.24533 0.95374 0.98703 1.01844 1.69941 0.98128 1.40051 1.49364 0.86250 0.76578 0.83269 0.80662 1.22263 1.22426 1.21187 1.21732 0.94189 0.88787 0.94938 0.92003 0.92088 0.92521 0.90515 0.90878 0.88065 0.92973 0.89288 0.89903 0.86126 0.86137 0.86013 0.84951 0.92627 0.91895 0.94135 0.93857 0.94684 0.96106 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 10.03 37.16 0.37 -1.39 16 2 C 0.10 1.12 4.51 -4.04 -0.02 1.10 16 3 N -0.61 -9.94 1.98 -163.67 -0.32 -10.26 16 4 C 0.47 9.48 5.58 -10.99 -0.06 9.42 16 5 O -0.38 -9.80 8.71 -12.86 -0.11 -9.91 16 6 C 0.11 1.94 2.45 -29.05 -0.07 1.87 16 7 H 0.08 1.10 5.65 -51.93 -0.29 0.80 16 8 O -0.34 -6.46 10.10 -53.65 -0.54 -7.00 16 9 C 0.06 0.79 6.85 37.14 0.25 1.04 16 10 C -0.12 -1.52 6.00 -27.88 -0.17 -1.68 16 11 C -0.07 -0.98 5.78 -104.59 -0.60 -1.58 16 12 C -0.12 -1.57 9.67 -39.51 -0.38 -1.95 16 13 C -0.12 -1.44 10.05 -39.63 -0.40 -1.83 16 14 C -0.12 -1.57 10.05 -39.64 -0.40 -1.97 16 15 C -0.11 -1.62 8.16 -39.50 -0.32 -1.94 16 16 C -0.10 -1.62 5.41 -104.61 -0.57 -2.18 16 17 C 0.13 2.34 3.77 -65.78 -0.25 2.09 16 18 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 19 C -0.16 -3.10 6.52 -24.90 -0.16 -3.26 16 20 C 0.19 4.93 4.25 -3.07 -0.01 4.91 16 21 N -0.56 -15.22 1.73 -170.07 -0.29 -15.51 16 22 C -0.18 -5.46 8.71 -15.06 -0.13 -5.59 16 23 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 24 C -0.01 -0.31 5.46 -17.43 -0.10 -0.41 16 25 N -0.92 -29.59 10.41 55.49 0.58 -29.01 16 26 Si 0.90 24.56 29.56 -169.99 -5.02 19.54 16 27 H -0.29 -8.19 7.11 56.52 0.40 -7.79 16 28 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 29 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 30 C 0.13 2.86 6.16 -2.53 -0.02 2.84 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.66 7.30 -51.93 -0.38 0.28 16 34 H 0.08 0.71 7.96 -51.93 -0.41 0.30 16 35 H 0.07 0.79 4.65 -51.93 -0.24 0.55 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.58 8.07 -51.93 -0.42 0.16 16 38 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 43 H 0.13 1.85 4.61 -52.49 -0.24 1.60 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 46 H 0.04 1.21 6.31 -51.93 -0.33 0.89 16 47 H 0.04 1.27 7.10 -51.92 -0.37 0.90 16 48 H 0.24 7.64 8.31 -40.82 -0.34 7.30 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -37.40 376.40 -10.79 -48.19 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.72 Total: -1.20 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -3.03 Total: -0.50 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.04 Total: -54.78 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.65 Total: -16.91 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.02 Total: 19.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.40 -10.79 -48.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033917680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.351 kcal (2) G-P(sol) polarization free energy of solvation -37.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds