Wall clock time and date at job start Wed Apr 1 2020 02:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47067 * 2 1 4 4 C 1.34774 * 119.99970 * 85.72599 * 3 2 1 5 5 O 1.21280 * 120.00374 * 186.01004 * 4 3 2 6 6 C 1.50703 * 120.00019 * 6.00615 * 4 3 2 7 7 H 1.09000 * 109.21077 * 326.51018 * 6 4 3 8 8 O 1.42724 * 109.34016 * 206.90247 * 6 4 3 9 9 C 1.43215 * 113.11870 * 187.99103 * 8 6 4 10 10 C 1.52966 * 108.48079 * 70.71722 * 9 8 6 11 11 C 1.50743 * 109.76382 * 310.83707 * 10 9 8 12 12 C 1.38596 * 118.76584 * 196.80309 * 11 10 9 13 13 C 1.38068 * 120.28143 * 180.20250 * 12 11 10 14 14 C 1.38262 * 119.85820 * 0.02562 * 13 12 11 15 15 C 1.38054 * 119.89920 * 359.90416 * 14 13 12 16 16 C 1.37908 * 121.35793 * 16.86158 * 11 10 9 17 17 C 1.46500 * 120.00048 * 265.72395 * 3 2 1 18 18 H 1.09000 * 110.88955 * 10.15136 * 17 3 2 19 19 C 1.55159 * 111.00153 * 246.27322 * 17 3 2 20 20 C 1.54320 * 102.94365 * 277.42670 * 19 17 3 21 21 N 1.47023 * 107.27343 * 337.80951 * 20 19 17 22 22 C 1.36936 * 125.64934 * 178.98602 * 21 20 19 23 23 H 1.08001 * 119.99797 * 185.14602 * 22 21 20 24 24 C 1.38815 * 120.00040 * 5.14610 * 22 21 20 25 25 N 1.31625 * 120.00044 * 5.18486 * 24 22 21 26 26 Si 1.86797 * 120.00078 * 185.18312 * 24 22 21 27 27 H 1.48506 * 109.46885 * 94.99877 * 26 24 22 28 28 H 1.48497 * 109.47030 * 214.99940 * 26 24 22 29 29 H 1.48500 * 109.47066 * 335.00099 * 26 24 22 30 30 C 1.47423 * 108.69931 * 358.94059 * 21 20 19 31 31 H 1.09003 * 109.47143 * 59.99661 * 1 2 3 32 32 H 1.08999 * 109.46795 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46850 * 299.99848 * 1 2 3 34 34 H 1.09004 * 109.46850 * 240.00152 * 2 1 3 35 35 H 1.08998 * 109.47605 * 120.00227 * 2 1 3 36 36 H 1.09001 * 109.63868 * 190.41495 * 9 8 6 37 37 H 1.09006 * 109.63374 * 311.01531 * 9 8 6 38 38 H 1.08998 * 109.42338 * 70.92539 * 10 9 8 39 39 H 1.08995 * 109.42338 * 190.75293 * 10 9 8 40 40 H 1.08000 * 119.86361 * 0.21129 * 12 11 10 41 41 H 1.08000 * 120.07309 * 179.97438 * 13 12 11 42 42 H 1.08006 * 120.04828 * 179.97438 * 14 13 12 43 43 H 1.07996 * 119.84862 * 179.97438 * 15 14 13 44 44 H 1.08997 * 110.72373 * 35.79340 * 19 17 3 45 45 H 1.09014 * 110.71776 * 158.88610 * 19 17 3 46 46 H 1.08999 * 109.88366 * 97.22825 * 20 19 17 47 47 H 1.09008 * 109.88123 * 218.23430 * 20 19 17 48 48 H 0.96992 * 120.00215 * 180.02562 * 25 24 22 49 49 H 1.09005 * 110.36807 * 265.28915 * 30 21 20 50 50 H 1.08994 * 110.36496 * 142.97010 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1609 2.0455 1.1639 5 8 2.4599 3.2209 1.1587 6 6 1.9488 1.3279 2.4720 7 1 1.1734 0.5725 2.3450 8 8 1.5362 2.2667 3.4647 9 6 1.4864 1.7069 4.7820 10 6 2.9188 1.4547 5.2560 11 6 3.6858 0.7150 4.1898 12 6 4.8695 0.0830 4.5368 13 6 5.5993 -0.5998 3.5842 14 6 5.1477 -0.6529 2.2785 15 6 3.9680 -0.0249 1.9323 16 6 3.2332 0.6593 2.8883 17 6 2.3517 2.0403 -1.2652 18 1 2.0173 1.4439 -2.1140 19 6 3.8728 2.3328 -1.3559 20 6 4.0193 3.6496 -0.5647 21 7 2.7018 4.3021 -0.5550 22 6 2.4028 5.4874 0.0621 23 1 1.3834 5.8436 0.0819 24 6 3.4098 6.2310 0.6620 25 7 4.6647 5.8501 0.5504 26 14 2.9838 7.7723 1.6276 27 1 2.8609 7.4353 3.0687 28 1 4.0565 8.7828 1.4452 29 1 1.6954 8.3238 1.1366 30 6 1.7564 3.4693 -1.3205 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.9944 2.4056 5.4586 37 1 0.9369 0.7658 4.7594 38 1 3.4068 2.4081 5.4582 39 1 2.8989 0.8580 6.1680 40 1 5.2224 0.1247 5.5566 41 1 6.5214 -1.0908 3.8582 42 1 5.7164 -1.1859 1.5308 43 1 3.6162 -0.0665 0.9121 44 1 4.4477 1.5347 -0.8864 45 1 4.1784 2.4672 -2.3937 46 1 4.3344 3.4353 0.4566 47 1 4.7515 4.2946 -1.0506 48 1 5.3683 6.3695 0.9699 49 1 1.6957 3.8153 -2.3524 50 1 0.7712 3.4882 -0.8547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033917680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:17 Heat of formation + Delta-G solvation = 15.210988 kcal Electronic energy + Delta-G solvation = -33445.038926 eV Core-core repulsion = 29439.589134 eV Total energy + Delta-G solvation = -4005.449793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.03032 -40.57662 -38.63329 -37.61845 -36.71138 -34.33254 -33.81452 -32.68503 -31.46145 -30.54961 -30.34112 -28.87000 -27.32677 -26.19714 -24.86933 -24.11801 -23.76036 -22.15321 -21.77240 -21.08278 -19.51958 -18.83575 -18.37242 -17.83841 -17.66477 -16.93141 -16.51653 -16.47408 -16.17231 -15.90579 -15.64435 -15.56270 -15.02973 -14.77830 -14.70579 -14.50623 -14.18029 -13.80969 -13.69771 -13.58765 -13.49388 -13.38428 -13.14018 -12.93376 -12.83175 -12.75857 -12.70534 -12.56387 -12.20322 -12.14817 -11.98406 -11.89773 -11.68456 -11.58437 -11.55293 -11.35188 -10.68895 -10.54427 -10.29243 -9.68978 -9.53736 -9.29189 -8.27468 -7.62733 -4.85602 0.30764 0.41452 1.37562 1.43583 1.48752 1.88174 2.07890 2.60137 2.77762 3.02869 3.54489 3.58427 3.59355 3.76422 3.83412 3.89112 3.99208 4.07358 4.11078 4.15622 4.22076 4.24006 4.26188 4.39148 4.46590 4.51075 4.55146 4.61220 4.68988 4.74022 4.77767 4.84079 4.88708 4.93357 5.00880 5.03569 5.06730 5.10993 5.12818 5.17472 5.41541 5.47244 5.54014 5.55629 5.57873 5.87410 5.93168 6.00124 6.05186 6.10276 6.41868 6.70251 7.33360 7.76370 8.05042 8.68126 9.48084 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009769 B = 0.005629 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.487218 B = 4973.158309 C = 5959.590583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 N -0.606 5.606 4 C 0.468 3.532 5 O -0.453 6.453 6 C 0.120 3.880 7 H 0.102 0.898 8 O -0.389 6.389 9 C 0.052 3.948 10 C -0.114 4.114 11 C -0.089 4.089 12 C -0.127 4.127 13 C -0.117 4.117 14 C -0.127 4.127 15 C -0.123 4.123 16 C -0.127 4.127 17 C 0.149 3.851 18 H 0.140 0.860 19 C -0.144 4.144 20 C 0.205 3.795 21 N -0.576 5.576 22 C -0.176 4.176 23 H 0.056 0.944 24 C -0.073 4.073 25 N -0.952 5.952 26 Si 0.955 3.045 27 H -0.305 1.305 28 H -0.295 1.295 29 H -0.271 1.271 30 C 0.124 3.876 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.035 0.965 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.119 0.881 40 H 0.144 0.856 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.137 0.863 44 H 0.070 0.930 45 H 0.086 0.914 46 H -0.008 1.008 47 H -0.004 1.004 48 H 0.232 0.768 49 H 0.035 0.965 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 -23.590 3.528 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.029 4.029 3 N -0.344 5.344 4 C 0.252 3.748 5 O -0.320 6.320 6 C 0.058 3.942 7 H 0.119 0.881 8 O -0.308 6.308 9 C -0.024 4.024 10 C -0.151 4.151 11 C -0.089 4.089 12 C -0.145 4.145 13 C -0.135 4.135 14 C -0.145 4.145 15 C -0.141 4.141 16 C -0.128 4.128 17 C 0.045 3.955 18 H 0.158 0.842 19 C -0.184 4.184 20 C 0.080 3.920 21 N -0.300 5.300 22 C -0.306 4.306 23 H 0.074 0.926 24 C -0.264 4.264 25 N -0.605 5.605 26 Si 0.787 3.213 27 H -0.234 1.234 28 H -0.222 1.222 29 H -0.196 1.196 30 C -0.002 4.002 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.054 0.946 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.162 0.838 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.155 0.845 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.010 0.990 47 H 0.014 0.986 48 H 0.041 0.959 49 H 0.052 0.948 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.655 -22.540 3.594 23.294 hybrid contribution 0.103 1.336 1.027 1.689 sum -4.552 -21.203 4.621 22.173 Atomic orbital electron populations 1.22222 0.95329 1.03258 1.01707 1.21999 0.95052 0.81084 1.04755 1.47885 1.67397 1.14747 1.04338 1.20653 0.80143 0.88557 0.85454 1.91536 1.40111 1.14687 1.85669 1.20893 0.94609 0.90501 0.88154 0.88097 1.88199 1.87609 1.37454 1.17542 1.22932 0.96139 1.00375 0.82915 1.21168 0.95760 1.00282 0.97901 1.19788 0.96910 0.98256 0.93961 1.21347 0.94001 0.97974 1.01152 1.21509 1.00215 0.98688 0.93072 1.21426 0.95801 0.99805 0.97429 1.21489 0.95849 0.97343 0.99426 1.19956 0.97809 1.00226 0.94830 1.22280 0.93897 0.93061 0.86275 0.84207 1.23220 0.96751 0.97484 1.00909 1.20679 0.86819 0.89763 0.94758 1.44204 1.06478 1.21018 1.58326 1.18971 0.92002 0.94440 1.25198 0.92589 1.25212 0.95521 1.01874 1.03757 1.70185 0.98655 1.41024 1.50648 0.85343 0.76922 0.80407 0.78611 1.23433 1.22205 1.19560 1.21964 0.92858 0.91086 0.94331 0.92297 0.88884 0.94580 0.86945 0.90083 0.87000 0.90357 0.91662 0.86255 0.83781 0.83102 0.83429 0.84496 0.91098 0.89519 0.99006 0.98586 0.95854 0.94760 0.96004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 10.03 71.98 0.72 -2.13 16 2 C 0.09 1.75 4.51 86.38 0.39 2.13 16 3 N -0.61 -18.50 1.98 -790.13 -1.57 -20.07 16 4 C 0.47 19.07 5.58 87.66 0.49 19.56 16 5 O -0.45 -24.84 8.71 14.58 0.13 -24.72 16 6 C 0.12 4.11 2.45 29.09 0.07 4.18 16 7 H 0.10 2.80 5.65 -2.39 -0.01 2.78 16 8 O -0.39 -15.32 10.10 -131.37 -1.33 -16.64 16 9 C 0.05 1.40 6.85 71.97 0.49 1.90 16 10 C -0.11 -2.94 6.00 29.85 0.18 -2.76 16 11 C -0.09 -2.60 5.78 -19.84 -0.11 -2.71 16 12 C -0.13 -3.07 9.67 22.32 0.22 -2.86 16 13 C -0.12 -2.57 10.05 22.24 0.22 -2.35 16 14 C -0.13 -2.97 10.05 22.23 0.22 -2.75 16 15 C -0.12 -3.43 8.16 22.32 0.18 -3.25 16 16 C -0.13 -4.05 5.41 -19.86 -0.11 -4.16 16 17 C 0.15 4.78 3.77 46.38 0.17 4.96 16 18 H 0.14 3.03 7.93 -2.39 -0.02 3.01 16 19 C -0.14 -5.38 6.52 31.78 0.21 -5.17 16 20 C 0.20 11.13 4.25 86.73 0.37 11.49 16 21 N -0.58 -32.24 1.73 -691.99 -1.20 -33.44 16 22 C -0.18 -11.12 8.71 84.03 0.73 -10.38 16 23 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 24 C -0.07 -4.71 5.46 84.86 0.46 -4.25 16 25 N -0.95 -64.69 10.41 21.65 0.23 -64.46 16 26 Si 0.96 53.01 29.56 68.60 2.03 55.03 16 27 H -0.31 -17.31 7.11 99.48 0.71 -16.60 16 28 H -0.29 -16.09 7.11 99.48 0.71 -15.38 16 29 H -0.27 -14.12 7.11 99.48 0.71 -13.42 16 30 C 0.12 5.35 6.16 86.85 0.54 5.89 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.04 0.76 7.30 -2.38 -0.02 0.75 16 34 H 0.11 1.41 7.96 -2.38 -0.02 1.39 16 35 H 0.08 1.47 4.65 -2.39 -0.01 1.46 16 36 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.08 1.64 8.07 -2.38 -0.02 1.62 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 42 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 43 H 0.14 3.51 4.61 -2.91 -0.01 3.49 16 44 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 46 H -0.01 -0.52 6.31 -2.39 -0.02 -0.54 16 47 H 0.00 -0.24 7.10 -2.38 -0.02 -0.26 16 48 H 0.23 15.53 8.31 -92.71 -0.77 14.76 16 49 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 50 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -91.28 376.40 4.68 -86.60 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.94 Total: 10.34 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 5.45 Total: 7.36 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -2.54 Total: -117.97 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -1.20 Total: -41.36 kcal Atomic # 14 Polarization: 53.01 SS G_CDS: 2.03 Total: 55.03 kcal Total: -91.28 4.68 -86.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033917680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.815 kcal (2) G-P(sol) polarization free energy of solvation -91.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds