Wall clock time and date at job start Wed Apr 1 2020 02:42:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46505 * 109.47271 * 2 1
4 4 C 1.34775 * 119.99794 * 99.58949 * 3 2 1
5 5 O 1.21585 * 119.99879 * 187.13929 * 4 3 2
6 6 C 1.47603 * 120.00071 * 7.13616 * 4 3 2
7 7 C 1.39759 * 120.26846 * 329.70542 * 6 4 3
8 8 C 1.37464 * 120.19838 * 180.48256 * 7 6 4
9 9 C 1.39590 * 120.43258 * 359.45167 * 8 7 6
10 10 C 1.39176 * 119.10349 * 359.90363 * 9 8 7
11 11 C 1.37313 * 120.93567 * 0.56343 * 10 9 8
12 12 C 1.51680 * 107.00179 * 180.97666 * 10 9 8
13 13 H 1.09007 * 110.93899 * 133.31090 * 12 10 9
14 14 C 1.53000 * 110.93810 * 256.99474 * 12 10 9
15 15 C 1.54690 * 101.92043 * 15.15684 * 12 10 9
16 16 O 1.35998 * 129.73475 * 179.31569 * 9 8 7
17 17 C 1.46491 * 119.99920 * 279.59024 * 3 2 1
18 18 H 1.08997 * 110.64584 * 25.78369 * 17 3 2
19 19 C 1.55158 * 110.72282 * 262.63861 * 17 3 2
20 20 C 1.55389 * 101.36278 * 277.04430 * 19 17 3
21 21 N 1.47424 * 104.87888 * 323.01516 * 20 19 17
22 22 C 1.36937 * 125.65102 * 204.10216 * 21 20 19
23 23 H 1.07996 * 119.99869 * 180.02562 * 22 21 20
24 24 C 1.38810 * 119.99704 * 0.03378 * 22 21 20
25 25 N 1.31618 * 120.00294 * 0.02562 * 24 22 21
26 26 Si 1.86807 * 119.99681 * 180.02562 * 24 22 21
27 27 H 1.48496 * 109.46856 * 60.00353 * 26 24 22
28 28 H 1.48500 * 109.47035 * 180.02562 * 26 24 22
29 29 H 1.48502 * 109.46999 * 300.00087 * 26 24 22
30 30 C 1.47026 * 108.70030 * 24.12992 * 21 20 19
31 31 H 1.09001 * 109.47244 * 299.99748 * 1 2 3
32 32 H 1.09002 * 109.46919 * 59.99916 * 1 2 3
33 33 H 1.09003 * 109.46754 * 179.97438 * 1 2 3
34 34 H 1.09001 * 109.47244 * 240.00252 * 2 1 3
35 35 H 1.08997 * 109.47405 * 120.00604 * 2 1 3
36 36 H 1.07995 * 119.89647 * 0.22986 * 7 6 4
37 37 H 1.08007 * 119.78507 * 179.72457 * 8 7 6
38 38 H 1.08002 * 120.06754 * 179.59897 * 11 10 9
39 39 H 1.08996 * 109.46894 * 60.00750 * 14 12 10
40 40 H 1.09002 * 109.46821 * 180.02562 * 14 12 10
41 41 H 1.08993 * 109.47573 * 300.00037 * 14 12 10
42 42 H 1.08996 * 110.74891 * 93.03781 * 15 12 10
43 43 H 1.09002 * 110.74864 * 216.19885 * 15 12 10
44 44 H 1.08993 * 111.00242 * 35.21089 * 19 17 3
45 45 H 1.09000 * 111.00456 * 159.06801 * 19 17 3
46 46 H 1.09009 * 110.34189 * 204.16131 * 20 19 17
47 47 H 1.08997 * 110.44550 * 81.92120 * 20 19 17
48 48 H 0.96997 * 120.00023 * 179.97438 * 25 24 22
49 49 H 1.08994 * 109.88385 * 239.52606 * 30 21 20
50 50 H 1.08995 * 110.00516 * 118.43172 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3813 0.0000
4 6 2.4263 1.9517 1.1509
5 8 2.7083 3.1342 1.1767
6 6 2.5308 1.1411 2.3800
7 6 1.6813 0.0490 2.5779
8 6 1.7732 -0.6990 3.7275
9 6 2.7213 -0.3837 4.7023
10 6 3.5733 0.6968 4.4935
11 6 3.4837 1.4563 3.3531
12 6 4.4942 0.7743 5.6963
13 1 5.5310 0.9036 5.3854
14 6 4.0649 1.8977 6.6421
15 6 4.2821 -0.6111 6.3510
16 8 2.9673 -0.9785 5.9004
17 6 2.0633 2.1423 -1.2509
18 1 1.3253 1.7633 -1.9580
19 6 3.4863 2.1010 -1.8679
20 6 4.1964 3.2336 -1.0756
21 7 3.1676 4.2748 -0.8995
22 6 3.4076 5.6068 -0.6914
23 1 2.5814 6.2923 -0.5734
24 6 4.7127 6.0759 -0.6324
25 7 5.7195 5.2406 -0.7769
26 14 5.0400 7.8929 -0.3478
27 1 4.4518 8.3041 0.9522
28 1 6.5050 8.1347 -0.3274
29 1 4.4234 8.6844 -1.4426
30 6 1.8413 3.6459 -0.9836
31 1 -0.3634 0.5138 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 -0.3633 -1.0277 -0.0005
34 1 1.8934 -0.5138 -0.8900
35 1 1.8934 -0.5139 0.8899
36 1 0.9479 -0.2054 1.8271
37 1 1.1104 -1.5388 3.8756
38 1 4.1478 2.2957 3.2084
39 1 3.0492 1.7110 6.9906
40 1 4.7417 1.9322 7.4959
41 1 4.0984 2.8504 6.1137
42 1 5.0255 -1.3243 5.9950
43 1 4.3131 -0.5335 7.4378
44 1 3.9620 1.1369 -1.6886
45 1 3.4569 2.3284 -2.9335
46 1 5.0384 3.6250 -1.6466
47 1 4.5342 2.8663 -0.1066
48 1 6.6314 5.5685 -0.7360
49 1 1.2727 4.0879 -1.8017
50 1 1.3048 3.7802 -0.0444
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001033931744.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:42:54
Heat of formation + Delta-G solvation = 48.692528 kcal
Electronic energy + Delta-G solvation = -31834.297083 eV
Core-core repulsion = 27830.299159 eV
Total energy + Delta-G solvation = -4003.997924 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.44164 -40.16422 -37.54204 -36.08652 -35.44185 -34.07222 -32.30459 -30.60072
-30.12237 -29.77329 -28.74359 -27.12246 -26.84060 -24.53408 -23.66399 -23.38214
-22.45577 -21.08092 -20.77113 -19.86333 -18.51124 -17.71824 -16.98232 -16.68744
-16.54607 -16.23510 -15.31548 -15.11621 -14.68788 -14.59802 -14.34748 -13.91712
-13.67267 -13.55113 -13.47972 -13.22191 -13.12859 -12.80893 -12.72216 -12.40399
-12.25466 -12.01941 -11.87517 -11.80530 -11.56764 -11.40668 -11.34429 -11.15115
-10.88417 -10.79128 -10.69839 -10.66686 -10.42651 -10.06255 -9.97223 -9.63922
-9.35938 -8.93448 -8.77119 -8.38326 -8.16290 -8.00907 -6.47812 -5.38923
-2.74359 0.98480 1.27659 3.03758 3.18978 3.35137 3.54440 3.57743
3.59678 3.89786 4.17780 4.38058 4.69930 4.71203 4.72923 4.77522
4.85845 5.04905 5.13965 5.17126 5.20199 5.29512 5.36143 5.38318
5.48740 5.54595 5.55665 5.62905 5.68347 5.72084 5.74687 5.78030
5.87046 5.96738 6.01131 6.03946 6.11080 6.16517 6.30117 6.36991
6.39929 6.46748 6.59975 6.68293 6.78299 6.96064 7.03735 7.34324
7.79689 7.86871 7.89723 8.08541 8.62139 8.86381 9.49716 10.11816
10.79195 11.65936
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.010574 B = 0.004007 C = 0.003102
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2647.262063 B = 6986.218097 C = 9023.054720
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.073 3.927
3 N -0.603 5.603
4 C 0.536 3.464
5 O -0.455 6.455
6 C -0.145 4.145
7 C -0.089 4.089
8 C -0.149 4.149
9 C 0.118 3.882
10 C -0.176 4.176
11 C -0.011 4.011
12 C -0.081 4.081
13 H 0.099 0.901
14 C -0.141 4.141
15 C 0.054 3.946
16 O -0.304 6.304
17 C 0.135 3.865
18 H 0.080 0.920
19 C -0.162 4.162
20 C 0.163 3.837
21 N -0.577 5.577
22 C -0.194 4.194
23 H 0.071 0.929
24 C -0.018 4.018
25 N -0.927 5.927
26 Si 0.908 3.092
27 H -0.289 1.289
28 H -0.293 1.293
29 H -0.288 1.288
30 C 0.141 3.859
31 H 0.062 0.938
32 H 0.065 0.935
33 H 0.066 0.934
34 H 0.072 0.928
35 H 0.106 0.894
36 H 0.165 0.835
37 H 0.130 0.870
38 H 0.137 0.863
39 H 0.059 0.941
40 H 0.062 0.938
41 H 0.067 0.933
42 H 0.077 0.923
43 H 0.107 0.893
44 H 0.056 0.944
45 H 0.066 0.934
46 H 0.099 0.901
47 H 0.011 0.989
48 H 0.246 0.754
49 H 0.015 0.985
50 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.901 -17.799 9.547 21.344
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C -0.050 4.050
3 N -0.339 5.339
4 C 0.322 3.678
5 O -0.325 6.325
6 C -0.149 4.149
7 C -0.107 4.107
8 C -0.168 4.168
9 C 0.073 3.927
10 C -0.177 4.177
11 C -0.029 4.029
12 C -0.099 4.099
13 H 0.117 0.883
14 C -0.198 4.198
15 C -0.021 4.021
16 O -0.218 6.218
17 C 0.032 3.968
18 H 0.098 0.902
19 C -0.202 4.202
20 C 0.038 3.962
21 N -0.302 5.302
22 C -0.323 4.323
23 H 0.088 0.912
24 C -0.212 4.212
25 N -0.578 5.578
26 Si 0.740 3.260
27 H -0.216 1.216
28 H -0.219 1.219
29 H -0.215 1.215
30 C 0.015 3.985
31 H 0.080 0.920
32 H 0.084 0.916
33 H 0.085 0.915
34 H 0.090 0.910
35 H 0.123 0.877
36 H 0.182 0.818
37 H 0.148 0.852
38 H 0.155 0.845
39 H 0.078 0.922
40 H 0.081 0.919
41 H 0.086 0.914
42 H 0.096 0.904
43 H 0.125 0.875
44 H 0.075 0.925
45 H 0.085 0.915
46 H 0.117 0.883
47 H 0.029 0.971
48 H 0.057 0.943
49 H 0.032 0.968
50 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -6.693 -17.102 9.731 20.784
hybrid contribution 0.319 0.820 0.284 0.925
sum -6.374 -16.282 10.015 20.150
Atomic orbital electron populations
1.22302 0.96258 1.02104 1.03032 1.22334 0.94083 0.84202 1.04371
1.47654 1.65431 1.13106 1.07664 1.18169 0.79074 0.87813 0.82732
1.91176 1.44049 1.13506 1.83767 1.20034 0.99610 0.98205 0.97009
1.22072 0.99100 0.93069 0.96461 1.20167 1.01086 1.03229 0.92322
1.19814 0.95720 0.91334 0.85855 1.20617 1.01746 0.98148 0.97226
1.20395 0.95742 0.97020 0.89785 1.21380 1.00000 0.95701 0.92853
0.88311 1.21763 1.01591 0.97981 0.98480 1.23923 0.82696 0.94863
1.00598 1.86771 1.33905 1.69273 1.31804 1.22085 0.97747 0.93109
0.83856 0.90241 1.23557 0.95983 1.00589 1.00060 1.21883 0.92767
0.85356 0.96160 1.44123 0.98974 1.03466 1.83625 1.18949 0.91783
0.82225 1.39329 0.91156 1.24643 0.95502 0.97421 1.03616 1.69795
0.97663 1.31840 1.58504 0.86228 0.76621 0.85279 0.77886 1.21630
1.21877 1.21537 1.21405 0.90737 0.88685 0.97718 0.91956 0.91639
0.91500 0.90984 0.87694 0.81814 0.85198 0.84510 0.92225 0.91874
0.91397 0.90442 0.87543 0.92549 0.91524 0.88347 0.97122 0.94282
0.96771 0.94536
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.62 9.16 37.16 0.34 -1.28 16
2 C 0.07 0.82 5.59 -4.04 -0.02 0.79 16
3 N -0.60 -9.76 2.54 -165.22 -0.42 -10.18 16
4 C 0.54 10.24 6.42 -12.44 -0.08 10.16 16
5 O -0.45 -11.14 10.77 5.29 0.06 -11.08 16
6 C -0.15 -2.31 5.59 -104.92 -0.59 -2.90 16
7 C -0.09 -1.10 7.48 -39.30 -0.29 -1.39 16
8 C -0.15 -1.74 10.05 -39.36 -0.40 -2.13 16
9 C 0.12 1.52 7.04 -38.73 -0.27 1.25 16
10 C -0.18 -2.38 5.61 -104.13 -0.58 -2.97 16
11 C -0.01 -0.17 9.59 -39.33 -0.38 -0.55 16
12 C -0.08 -0.85 3.73 -90.40 -0.34 -1.19 16
13 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16
14 C -0.14 -1.39 9.24 37.16 0.34 -1.05 16
15 C 0.05 0.48 7.54 38.05 0.29 0.77 16
16 O -0.30 -3.61 11.10 -19.73 -0.22 -3.83 16
17 C 0.14 2.44 3.61 -66.10 -0.24 2.20 16
18 H 0.08 1.19 7.91 -51.93 -0.41 0.77 16
19 C -0.16 -3.21 6.80 -24.32 -0.17 -3.37 16
20 C 0.16 4.24 5.05 -2.27 -0.01 4.22 16
21 N -0.58 -15.77 2.18 -169.77 -0.37 -16.14 16
22 C -0.19 -5.80 10.27 -15.06 -0.15 -5.95 16
23 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16
24 C -0.02 -0.54 5.49 -17.43 -0.10 -0.63 16
25 N -0.93 -28.65 10.09 55.49 0.56 -28.09 16
26 Si 0.91 23.57 29.55 -169.99 -5.02 18.54 16
27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16
28 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16
29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16
30 C 0.14 3.20 5.92 -3.06 -0.02 3.19 16
31 H 0.06 0.61 7.17 -51.93 -0.37 0.24 16
32 H 0.06 0.63 7.98 -51.93 -0.41 0.21 16
33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
35 H 0.11 1.10 3.88 -52.85 -0.21 0.90 16
36 H 0.17 1.66 2.73 -52.49 -0.14 1.51 16
37 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16
38 H 0.14 2.45 7.94 -52.49 -0.42 2.03 16
39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16
42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
43 H 0.11 0.69 7.92 -51.93 -0.41 0.28 16
44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
45 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16
46 H 0.10 2.87 5.87 -51.92 -0.30 2.57 16
47 H 0.01 0.31 6.61 -51.93 -0.34 -0.03 16
48 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16
49 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16
50 H 0.04 0.89 6.22 -51.93 -0.32 0.57 16
LS Contribution 381.58 15.07 5.75 5.75
Total: -1.00 -35.73 381.58 -9.87 -45.60
By element:
Atomic # 1 Polarization: 7.80 SS G_CDS: -7.54 Total: 0.26 kcal
Atomic # 6 Polarization: 1.83 SS G_CDS: -2.66 Total: -0.83 kcal
Atomic # 7 Polarization: -54.18 SS G_CDS: -0.23 Total: -54.41 kcal
Atomic # 8 Polarization: -14.75 SS G_CDS: -0.16 Total: -14.91 kcal
Atomic # 14 Polarization: 23.57 SS G_CDS: -5.02 Total: 18.54 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -35.73 -9.87 -45.60 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033931744.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.290 kcal
(2) G-P(sol) polarization free energy of solvation -35.728 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.562 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.597 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.693 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds