Wall clock time and date at job start Wed Apr 1 2020 02:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47095 * 2 1 4 4 C 1.34773 * 120.00058 * 251.04611 * 3 2 1 5 5 O 1.21589 * 120.00073 * 184.47351 * 4 3 2 6 6 C 1.47605 * 120.00143 * 4.47201 * 4 3 2 7 7 C 1.39746 * 120.26668 * 27.50346 * 6 4 3 8 8 C 1.37470 * 120.20601 * 179.85217 * 7 6 4 9 9 C 1.39592 * 120.42955 * 0.09690 * 8 7 6 10 10 C 1.39185 * 119.09696 * 0.15527 * 9 8 7 11 11 C 1.37305 * 120.94251 * 359.35929 * 10 9 8 12 12 C 1.51681 * 106.99387 * 179.44398 * 10 9 8 13 13 H 1.08993 * 110.98255 * 226.31299 * 12 10 9 14 14 C 1.53012 * 110.94190 * 102.62962 * 12 10 9 15 15 C 1.54701 * 101.89500 * 344.48578 * 12 10 9 16 16 O 1.35991 * 129.72204 * 180.59553 * 9 8 7 17 17 C 1.46506 * 119.99940 * 71.04355 * 3 2 1 18 18 H 1.08996 * 110.91569 * 34.99525 * 17 3 2 19 19 C 1.55160 * 111.00320 * 271.08926 * 17 3 2 20 20 C 1.54320 * 102.94490 * 277.42982 * 19 17 3 21 21 N 1.47292 * 107.30550 * 337.81868 * 20 19 17 22 22 C 1.36944 * 125.79353 * 178.92775 * 21 20 19 23 23 H 1.07993 * 119.99421 * 179.97438 * 22 21 20 24 24 C 1.38812 * 119.99849 * 359.97438 * 22 21 20 25 25 N 1.31625 * 119.99968 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99899 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46895 * 90.00292 * 26 24 22 28 28 H 1.48494 * 109.47152 * 209.99903 * 26 24 22 29 29 H 1.48499 * 109.46968 * 330.00134 * 26 24 22 30 30 C 1.47421 * 108.55868 * 358.92516 * 21 20 19 31 31 H 1.08999 * 109.47388 * 299.99869 * 1 2 3 32 32 H 1.09003 * 109.46914 * 60.00453 * 1 2 3 33 33 H 1.09006 * 109.46912 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47388 * 240.00131 * 2 1 3 35 35 H 1.08996 * 109.46997 * 119.99893 * 2 1 3 36 36 H 1.08009 * 119.89986 * 359.87390 * 7 6 4 37 37 H 1.08001 * 119.78758 * 180.11120 * 8 7 6 38 38 H 1.07993 * 120.07630 * 180.60516 * 11 10 9 39 39 H 1.08998 * 109.46742 * 306.04302 * 14 12 10 40 40 H 1.08998 * 109.46965 * 66.03678 * 14 12 10 41 41 H 1.08993 * 109.46688 * 186.04158 * 14 12 10 42 42 H 1.09008 * 110.73665 * 267.04073 * 15 12 10 43 43 H 1.08991 * 110.90368 * 143.77871 * 15 12 10 44 44 H 1.08998 * 110.71610 * 35.79304 * 19 17 3 45 45 H 1.09006 * 110.71625 * 158.88821 * 19 17 3 46 46 H 1.08996 * 109.88250 * 97.22432 * 20 19 17 47 47 H 1.09003 * 109.88214 * 218.23769 * 20 19 17 48 48 H 0.96998 * 119.99865 * 180.02562 * 25 24 22 49 49 H 1.09004 * 110.37147 * 265.26194 * 30 21 20 50 50 H 1.09002 * 110.36790 * 143.04993 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.6003 1.8901 -1.1039 5 8 3.0784 3.0078 -1.0787 6 6 2.6575 1.0908 -2.3434 7 6 1.6852 0.1208 -2.6014 8 6 1.7379 -0.6209 -3.7577 9 6 2.7620 -0.4150 -4.6836 10 6 3.7304 0.5489 -4.4186 11 6 3.6816 1.3019 -3.2715 12 6 4.7029 0.5320 -5.5825 13 1 5.7341 0.5342 -5.2295 14 6 4.4479 1.7098 -6.5254 15 6 4.3560 -0.8106 -6.2684 16 8 2.9893 -1.0244 -5.8779 17 6 1.8739 2.2092 1.2000 18 1 1.9877 1.6092 2.1028 19 6 0.5155 2.9591 1.1980 20 6 0.8015 4.1902 0.3126 21 7 2.2585 4.4065 0.3204 22 6 2.9259 5.3890 -0.3613 23 1 4.0009 5.4621 -0.2879 24 6 2.2208 6.2907 -1.1464 25 7 0.9106 6.2018 -1.2354 26 14 3.1312 7.6312 -2.0757 27 1 3.5062 7.1322 -3.4231 28 1 2.2532 8.8206 -2.2150 29 1 4.3579 8.0064 -1.3276 30 6 2.8795 3.3874 1.1858 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.8896 -0.0466 -1.8903 37 1 0.9819 -1.3676 -3.9511 38 1 4.4349 2.0528 -3.0846 39 1 3.4021 1.7094 -6.8325 40 1 4.6750 2.6432 -6.0104 41 1 5.0849 1.6156 -7.4048 42 1 4.9941 -1.6113 -5.8944 43 1 4.4394 -0.7266 -7.3519 44 1 -0.2659 2.3401 0.7572 45 1 0.2412 3.2626 2.2084 46 1 0.4607 4.0018 -0.7054 47 1 0.2926 5.0647 0.7180 48 1 0.4179 6.8317 -1.7843 49 1 3.0189 3.7792 2.1934 50 1 3.8341 3.0664 0.7690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033931746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:00 Heat of formation + Delta-G solvation = 57.990439 kcal Electronic energy + Delta-G solvation = -32281.790183 eV Core-core repulsion = 28278.195447 eV Total energy + Delta-G solvation = -4003.594736 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.34636 -40.02775 -37.47505 -35.95057 -35.31097 -34.00569 -32.13908 -30.46066 -30.01856 -29.72710 -28.86713 -27.05546 -26.76909 -24.47075 -23.59997 -23.14168 -22.38274 -21.01881 -20.72007 -19.83421 -18.55036 -17.57419 -16.94726 -16.56546 -16.41452 -16.09965 -15.22455 -15.14672 -14.64145 -14.30154 -14.21709 -13.85367 -13.61601 -13.58350 -13.37242 -13.30875 -12.97103 -12.75427 -12.58442 -12.39765 -12.08710 -11.99942 -11.80424 -11.64347 -11.55303 -11.47746 -11.24374 -11.09374 -10.78138 -10.71036 -10.69376 -10.59482 -10.46573 -9.94970 -9.88516 -9.70448 -9.35964 -8.83444 -8.56629 -8.23177 -8.02239 -7.93185 -6.35163 -5.38165 -2.63185 1.10231 1.38024 3.12130 3.34020 3.49876 3.57489 3.61707 3.63313 4.07159 4.23327 4.44273 4.74889 4.77689 4.83681 4.90373 4.97003 5.11888 5.21355 5.26564 5.31815 5.36971 5.41802 5.48355 5.51108 5.59831 5.61632 5.66470 5.72165 5.78938 5.83170 5.84933 5.95169 6.03040 6.09068 6.09619 6.22032 6.27285 6.30538 6.39615 6.50007 6.54055 6.59898 6.70357 6.74912 6.93105 7.12906 7.34703 7.80125 7.83855 8.05588 8.08315 8.56370 9.10001 9.54880 10.15958 10.82661 11.75944 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.004771 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.806001 B = 5867.362808 C = 7998.968165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.084 3.916 3 N -0.604 5.604 4 C 0.520 3.480 5 O -0.428 6.428 6 C -0.139 4.139 7 C -0.082 4.082 8 C -0.150 4.150 9 C 0.116 3.884 10 C -0.179 4.179 11 C -0.013 4.013 12 C -0.079 4.079 13 H 0.096 0.904 14 C -0.142 4.142 15 C 0.054 3.946 16 O -0.304 6.304 17 C 0.132 3.868 18 H 0.076 0.924 19 C -0.165 4.165 20 C 0.183 3.817 21 N -0.570 5.570 22 C -0.166 4.166 23 H 0.070 0.930 24 C -0.022 4.022 25 N -0.934 5.934 26 Si 0.902 3.098 27 H -0.295 1.295 28 H -0.296 1.296 29 H -0.286 1.286 30 C 0.143 3.857 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.158 0.842 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.039 0.961 47 H 0.038 0.962 48 H 0.244 0.756 49 H 0.015 0.985 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 -19.468 -3.709 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.039 4.039 3 N -0.341 5.341 4 C 0.306 3.694 5 O -0.296 6.296 6 C -0.143 4.143 7 C -0.100 4.100 8 C -0.168 4.168 9 C 0.071 3.929 10 C -0.180 4.180 11 C -0.032 4.032 12 C -0.097 4.097 13 H 0.115 0.885 14 C -0.199 4.199 15 C -0.021 4.021 16 O -0.218 6.218 17 C 0.027 3.973 18 H 0.094 0.906 19 C -0.205 4.205 20 C 0.058 3.942 21 N -0.295 5.295 22 C -0.295 4.295 23 H 0.088 0.912 24 C -0.216 4.216 25 N -0.586 5.586 26 Si 0.735 3.265 27 H -0.223 1.223 28 H -0.223 1.223 29 H -0.212 1.212 30 C 0.016 3.984 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.175 0.825 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.123 0.877 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.033 0.967 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.282 -18.738 -3.990 19.437 hybrid contribution 0.311 0.662 -0.725 1.029 sum 3.593 -18.077 -4.715 19.024 Atomic orbital electron populations 1.22410 0.96403 1.01824 1.03314 1.22116 0.94282 0.84059 1.03458 1.47480 1.61254 1.12238 1.13105 1.18263 0.81889 0.86730 0.82542 1.91334 1.40869 1.15127 1.82221 1.20119 0.97488 0.99212 0.97480 1.21926 0.98724 0.93286 0.96047 1.20161 0.99585 1.04066 0.93013 1.19784 0.95697 0.91714 0.85735 1.20590 1.00013 0.99978 0.97424 1.20330 0.96952 0.95664 0.90228 1.21356 0.99464 0.95674 0.93242 0.88549 1.21774 1.02311 0.97439 0.98371 1.23913 0.80836 0.96314 1.00987 1.86761 1.29558 1.72624 1.32865 1.22239 0.97637 0.91873 0.85501 0.90612 1.23496 0.96382 0.99837 1.00773 1.21057 0.85213 0.91601 0.96307 1.44292 1.01331 1.31506 1.52327 1.18831 0.90457 1.01513 1.18734 0.91238 1.24602 0.95653 1.00001 1.01307 1.69938 1.04736 1.39036 1.44871 0.86220 0.78298 0.81786 0.80208 1.22346 1.22272 1.21177 1.21672 0.95492 0.87972 0.93276 0.91204 0.91774 0.91886 0.88326 0.91720 0.82456 0.85329 0.84793 0.92117 0.91407 0.91973 0.90587 0.87658 0.91790 0.92028 0.94271 0.94419 0.94560 0.96720 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 8.27 37.16 0.31 -1.62 16 2 C 0.08 0.99 5.64 -4.04 -0.02 0.97 16 3 N -0.60 -9.97 2.64 -164.86 -0.44 -10.41 16 4 C 0.52 10.26 6.95 -12.44 -0.09 10.17 16 5 O -0.43 -10.50 9.48 5.29 0.05 -10.45 16 6 C -0.14 -2.36 5.50 -104.92 -0.58 -2.94 16 7 C -0.08 -1.14 7.40 -39.30 -0.29 -1.43 16 8 C -0.15 -1.95 10.05 -39.36 -0.40 -2.34 16 9 C 0.12 1.61 7.05 -38.72 -0.27 1.34 16 10 C -0.18 -2.54 5.61 -104.13 -0.58 -3.12 16 11 C -0.01 -0.21 9.58 -39.33 -0.38 -0.59 16 12 C -0.08 -0.86 3.73 -90.39 -0.34 -1.20 16 13 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 14 C -0.14 -1.54 9.25 37.16 0.34 -1.20 16 15 C 0.05 0.51 7.54 38.05 0.29 0.80 16 16 O -0.30 -3.89 11.09 -19.71 -0.22 -4.11 16 17 C 0.13 2.31 3.53 -65.78 -0.23 2.08 16 18 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 19 C -0.17 -3.11 6.34 -24.90 -0.16 -3.27 16 20 C 0.18 4.65 4.90 -2.92 -0.01 4.64 16 21 N -0.57 -15.13 1.84 -169.86 -0.31 -15.44 16 22 C -0.17 -4.91 8.38 -15.06 -0.13 -5.04 16 23 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 24 C -0.02 -0.67 5.49 -17.43 -0.10 -0.77 16 25 N -0.93 -29.32 10.34 55.49 0.57 -28.74 16 26 Si 0.90 23.97 29.55 -169.99 -5.02 18.95 16 27 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 28 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 C 0.14 3.11 5.91 -2.53 -0.01 3.09 16 31 H 0.07 0.78 6.28 -51.93 -0.33 0.46 16 32 H 0.06 0.77 6.88 -51.93 -0.36 0.42 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 1.11 4.09 -51.93 -0.21 0.90 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.16 1.92 2.93 -52.48 -0.15 1.76 16 37 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.13 2.31 7.89 -52.49 -0.41 1.89 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.11 0.75 7.93 -51.93 -0.41 0.34 16 44 H 0.06 1.10 5.63 -51.93 -0.29 0.81 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.04 1.14 7.39 -51.93 -0.38 0.75 16 47 H 0.04 1.07 7.52 -51.93 -0.39 0.68 16 48 H 0.24 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.05 1.14 6.64 -51.93 -0.34 0.79 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -35.58 376.16 -9.83 -45.41 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.48 Total: -0.45 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.65 Total: -0.43 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.17 Total: -54.59 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.17 Total: -14.55 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.02 Total: 18.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.58 -9.83 -45.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033931746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.396 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds