Wall clock time and date at job start Wed Apr 1 2020 02:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47095 * 2 1 4 4 C 1.34773 * 120.00058 * 251.04611 * 3 2 1 5 5 O 1.21589 * 120.00073 * 184.47351 * 4 3 2 6 6 C 1.47605 * 120.00143 * 4.47201 * 4 3 2 7 7 C 1.39746 * 120.26668 * 27.50346 * 6 4 3 8 8 C 1.37470 * 120.20601 * 179.85217 * 7 6 4 9 9 C 1.39592 * 120.42955 * 0.09690 * 8 7 6 10 10 C 1.39185 * 119.09696 * 0.15527 * 9 8 7 11 11 C 1.37305 * 120.94251 * 359.35929 * 10 9 8 12 12 C 1.51681 * 106.99387 * 179.44398 * 10 9 8 13 13 H 1.08993 * 110.98255 * 226.31299 * 12 10 9 14 14 C 1.53012 * 110.94190 * 102.62962 * 12 10 9 15 15 C 1.54701 * 101.89500 * 344.48578 * 12 10 9 16 16 O 1.35991 * 129.72204 * 180.59553 * 9 8 7 17 17 C 1.46506 * 119.99940 * 71.04355 * 3 2 1 18 18 H 1.08996 * 110.91569 * 34.99525 * 17 3 2 19 19 C 1.55160 * 111.00320 * 271.08926 * 17 3 2 20 20 C 1.54320 * 102.94490 * 277.42982 * 19 17 3 21 21 N 1.47292 * 107.30550 * 337.81868 * 20 19 17 22 22 C 1.36944 * 125.79353 * 178.92775 * 21 20 19 23 23 H 1.07993 * 119.99421 * 179.97438 * 22 21 20 24 24 C 1.38812 * 119.99849 * 359.97438 * 22 21 20 25 25 N 1.31625 * 119.99968 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99899 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46895 * 90.00292 * 26 24 22 28 28 H 1.48494 * 109.47152 * 209.99903 * 26 24 22 29 29 H 1.48499 * 109.46968 * 330.00134 * 26 24 22 30 30 C 1.47421 * 108.55868 * 358.92516 * 21 20 19 31 31 H 1.08999 * 109.47388 * 299.99869 * 1 2 3 32 32 H 1.09003 * 109.46914 * 60.00453 * 1 2 3 33 33 H 1.09006 * 109.46912 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47388 * 240.00131 * 2 1 3 35 35 H 1.08996 * 109.46997 * 119.99893 * 2 1 3 36 36 H 1.08009 * 119.89986 * 359.87390 * 7 6 4 37 37 H 1.08001 * 119.78758 * 180.11120 * 8 7 6 38 38 H 1.07993 * 120.07630 * 180.60516 * 11 10 9 39 39 H 1.08998 * 109.46742 * 306.04302 * 14 12 10 40 40 H 1.08998 * 109.46965 * 66.03678 * 14 12 10 41 41 H 1.08993 * 109.46688 * 186.04158 * 14 12 10 42 42 H 1.09008 * 110.73665 * 267.04073 * 15 12 10 43 43 H 1.08991 * 110.90368 * 143.77871 * 15 12 10 44 44 H 1.08998 * 110.71610 * 35.79304 * 19 17 3 45 45 H 1.09006 * 110.71625 * 158.88821 * 19 17 3 46 46 H 1.08996 * 109.88250 * 97.22432 * 20 19 17 47 47 H 1.09003 * 109.88214 * 218.23769 * 20 19 17 48 48 H 0.96998 * 119.99865 * 180.02562 * 25 24 22 49 49 H 1.09004 * 110.37147 * 265.26194 * 30 21 20 50 50 H 1.09002 * 110.36790 * 143.04993 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.6003 1.8901 -1.1039 5 8 3.0784 3.0078 -1.0787 6 6 2.6575 1.0908 -2.3434 7 6 1.6852 0.1208 -2.6014 8 6 1.7379 -0.6209 -3.7577 9 6 2.7620 -0.4150 -4.6836 10 6 3.7304 0.5489 -4.4186 11 6 3.6816 1.3019 -3.2715 12 6 4.7029 0.5320 -5.5825 13 1 5.7341 0.5342 -5.2295 14 6 4.4479 1.7098 -6.5254 15 6 4.3560 -0.8106 -6.2684 16 8 2.9893 -1.0244 -5.8779 17 6 1.8739 2.2092 1.2000 18 1 1.9877 1.6092 2.1028 19 6 0.5155 2.9591 1.1980 20 6 0.8015 4.1902 0.3126 21 7 2.2585 4.4065 0.3204 22 6 2.9259 5.3890 -0.3613 23 1 4.0009 5.4621 -0.2879 24 6 2.2208 6.2907 -1.1464 25 7 0.9106 6.2018 -1.2354 26 14 3.1312 7.6312 -2.0757 27 1 3.5062 7.1322 -3.4231 28 1 2.2532 8.8206 -2.2150 29 1 4.3579 8.0064 -1.3276 30 6 2.8795 3.3874 1.1858 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.8896 -0.0466 -1.8903 37 1 0.9819 -1.3676 -3.9511 38 1 4.4349 2.0528 -3.0846 39 1 3.4021 1.7094 -6.8325 40 1 4.6750 2.6432 -6.0104 41 1 5.0849 1.6156 -7.4048 42 1 4.9941 -1.6113 -5.8944 43 1 4.4394 -0.7266 -7.3519 44 1 -0.2659 2.3401 0.7572 45 1 0.2412 3.2626 2.2084 46 1 0.4607 4.0018 -0.7054 47 1 0.2926 5.0647 0.7180 48 1 0.4179 6.8317 -1.7843 49 1 3.0189 3.7792 2.1934 50 1 3.8341 3.0664 0.7690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033931746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:59 Heat of formation + Delta-G solvation = 36.029963 kcal Electronic energy + Delta-G solvation = -32282.742461 eV Core-core repulsion = 28278.195447 eV Total energy + Delta-G solvation = -4004.547014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.38589 -41.39651 -38.81951 -37.48577 -36.72391 -34.98328 -34.09834 -31.69831 -31.38424 -30.85894 -30.61097 -28.69521 -27.66781 -26.47234 -24.93122 -24.14708 -23.43067 -22.32464 -21.94211 -21.72983 -19.93127 -18.76284 -18.57135 -18.02443 -17.55813 -17.05677 -16.81964 -16.48601 -16.28487 -15.88744 -15.56621 -15.35183 -14.99702 -14.91167 -14.45859 -14.42192 -14.16732 -13.84283 -13.74685 -13.67836 -13.58434 -13.44859 -13.23840 -13.09366 -12.84635 -12.73922 -12.70857 -12.59202 -12.25329 -12.13138 -12.02228 -12.00460 -11.79110 -11.70997 -11.66959 -11.50378 -11.22927 -10.55312 -10.07628 -9.93865 -9.36085 -9.13112 -8.50039 -7.67972 -4.92005 -0.06893 0.25519 1.38192 1.41986 1.49034 2.00411 2.18596 2.29091 2.58148 2.78564 3.31852 3.49859 3.52046 3.69785 3.80480 3.83079 3.98322 4.02186 4.04777 4.14623 4.21816 4.29238 4.38364 4.40813 4.44388 4.48482 4.58294 4.62804 4.64262 4.72497 4.73961 4.84645 4.91498 4.94702 5.01135 5.03179 5.05979 5.10683 5.17653 5.20144 5.24452 5.29277 5.35326 5.42479 5.50391 5.54971 5.74718 5.86259 5.95919 6.10577 6.36329 6.70391 7.28680 7.66150 7.98828 8.63008 9.44668 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.004771 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.806001 B = 5867.362808 C = 7998.968165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.078 3.922 3 N -0.601 5.601 4 C 0.515 3.485 5 O -0.496 6.496 6 C -0.167 4.167 7 C -0.073 4.073 8 C -0.146 4.146 9 C 0.116 3.884 10 C -0.188 4.188 11 C -0.034 4.034 12 C -0.081 4.081 13 H 0.111 0.889 14 C -0.140 4.140 15 C 0.055 3.945 16 O -0.311 6.311 17 C 0.144 3.856 18 H 0.128 0.872 19 C -0.148 4.148 20 C 0.195 3.805 21 N -0.585 5.585 22 C -0.161 4.161 23 H 0.060 0.940 24 C -0.085 4.085 25 N -0.963 5.963 26 Si 0.960 3.040 27 H -0.301 1.301 28 H -0.296 1.296 29 H -0.272 1.272 30 C 0.137 3.863 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.178 0.822 37 H 0.161 0.839 38 H 0.108 0.892 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.133 0.867 44 H 0.085 0.915 45 H 0.086 0.914 46 H -0.010 1.010 47 H -0.004 1.004 48 H 0.234 0.766 49 H 0.026 0.974 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 -23.420 -3.608 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.043 4.043 3 N -0.336 5.336 4 C 0.302 3.698 5 O -0.369 6.369 6 C -0.171 4.171 7 C -0.090 4.090 8 C -0.164 4.164 9 C 0.070 3.930 10 C -0.189 4.189 11 C -0.053 4.053 12 C -0.100 4.100 13 H 0.129 0.871 14 C -0.197 4.197 15 C -0.019 4.019 16 O -0.225 6.225 17 C 0.040 3.960 18 H 0.146 0.854 19 C -0.187 4.187 20 C 0.070 3.930 21 N -0.309 5.309 22 C -0.291 4.291 23 H 0.078 0.922 24 C -0.275 4.275 25 N -0.617 5.617 26 Si 0.791 3.209 27 H -0.229 1.229 28 H -0.223 1.223 29 H -0.197 1.197 30 C 0.011 3.989 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.195 0.805 37 H 0.179 0.821 38 H 0.126 0.874 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.151 0.849 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.008 0.992 47 H 0.015 0.985 48 H 0.044 0.956 49 H 0.044 0.956 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.197 -22.767 -3.850 23.310 hybrid contribution 0.424 1.753 -0.807 1.976 sum 3.621 -21.014 -4.657 21.826 Atomic orbital electron populations 1.22384 0.95021 1.03934 1.02283 1.22453 0.95266 0.81211 1.05369 1.47616 1.60217 1.13946 1.11797 1.18792 0.80764 0.86217 0.83994 1.91282 1.44180 1.18000 1.83427 1.20036 0.99277 1.00809 0.96956 1.22076 0.97985 0.92095 0.96866 1.20513 0.99776 1.04048 0.92108 1.20023 0.95458 0.91321 0.86158 1.20865 1.01238 0.99437 0.97332 1.20250 0.97088 0.96205 0.91771 1.21503 0.99571 0.96755 0.92139 0.87096 1.21767 1.02004 0.96564 0.99380 1.24216 0.79430 0.95669 1.02562 1.86753 1.31522 1.72225 1.31995 1.22216 0.94695 0.91303 0.87801 0.85418 1.23363 0.97835 0.96931 1.00560 1.20740 0.84345 0.93116 0.94814 1.44467 1.02086 1.31954 1.52372 1.19021 0.90228 1.01787 1.18097 0.92207 1.25298 0.96499 1.02655 1.03032 1.70178 1.05892 1.39749 1.45902 0.85287 0.77660 0.79248 0.78666 1.22945 1.22261 1.19690 1.21816 0.95981 0.88759 0.92314 0.91342 0.93666 0.88211 0.87698 0.88588 0.80511 0.82112 0.87405 0.93611 0.93695 0.88799 0.88258 0.84905 0.89706 0.89584 0.99191 0.98545 0.95620 0.95613 0.94759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.27 71.98 0.60 -2.48 16 2 C 0.08 1.57 5.64 86.38 0.49 2.06 16 3 N -0.60 -19.06 2.64 -793.77 -2.09 -21.15 16 4 C 0.52 21.00 6.95 86.72 0.60 21.60 16 5 O -0.50 -25.97 9.48 -3.99 -0.04 -26.01 16 6 C -0.17 -5.83 5.50 -20.06 -0.11 -5.94 16 7 C -0.07 -1.93 7.40 22.45 0.17 -1.76 16 8 C -0.15 -3.46 10.05 22.42 0.23 -3.24 16 9 C 0.12 3.03 7.05 22.82 0.16 3.20 16 10 C -0.19 -5.32 5.61 -19.54 -0.11 -5.43 16 11 C -0.03 -1.19 9.58 22.43 0.21 -0.97 16 12 C -0.08 -1.68 3.73 -10.64 -0.04 -1.72 16 13 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 14 C -0.14 -2.99 9.25 71.99 0.67 -2.32 16 15 C 0.06 0.86 7.54 72.56 0.55 1.41 16 16 O -0.31 -7.10 11.09 -93.44 -1.04 -8.13 16 17 C 0.14 4.76 3.53 46.38 0.16 4.92 16 18 H 0.13 3.03 8.14 -2.39 -0.02 3.02 16 19 C -0.15 -5.36 6.34 31.78 0.20 -5.16 16 20 C 0.20 10.37 4.90 86.68 0.42 10.79 16 21 N -0.58 -32.48 1.84 -691.31 -1.27 -33.76 16 22 C -0.16 -10.03 8.38 84.03 0.70 -9.33 16 23 H 0.06 3.74 7.83 -2.91 -0.02 3.71 16 24 C -0.08 -5.41 5.49 84.86 0.47 -4.94 16 25 N -0.96 -64.17 10.34 21.65 0.22 -63.95 16 26 Si 0.96 51.86 29.55 68.60 2.03 53.89 16 27 H -0.30 -16.36 7.11 99.48 0.71 -15.65 16 28 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 29 H -0.27 -13.87 7.11 99.48 0.71 -13.16 16 30 C 0.14 6.02 5.91 86.86 0.51 6.54 16 31 H 0.07 1.23 6.28 -2.39 -0.01 1.22 16 32 H 0.04 0.97 6.88 -2.39 -0.02 0.95 16 33 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.11 2.03 4.09 -2.39 -0.01 2.02 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.18 3.88 2.93 -2.91 -0.01 3.87 16 37 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.11 4.18 7.89 -2.91 -0.02 4.16 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.13 1.35 7.93 -2.39 -0.02 1.34 16 44 H 0.08 2.74 5.63 -2.39 -0.01 2.72 16 45 H 0.09 2.74 8.14 -2.38 -0.02 2.73 16 46 H -0.01 -0.63 7.39 -2.39 -0.02 -0.65 16 47 H 0.00 -0.22 7.52 -2.39 -0.02 -0.24 16 48 H 0.23 15.36 8.31 -92.71 -0.77 14.59 16 49 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 50 H 0.03 1.62 6.64 -2.39 -0.02 1.60 16 Total: -1.00 -86.60 376.16 4.64 -81.96 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.95 Total: 9.93 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 5.88 Total: 7.23 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -3.14 Total: -118.86 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.07 Total: -34.14 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.03 Total: 53.89 kcal Total: -86.60 4.64 -81.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033931746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.987 kcal (2) G-P(sol) polarization free energy of solvation -86.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds