Wall clock time and date at job start Wed Apr 1 2020 02:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47014 * 2 1 4 4 C 1.34774 * 120.00169 * 97.62909 * 3 2 1 5 5 O 1.21584 * 120.00209 * 185.75703 * 4 3 2 6 6 C 1.47608 * 119.99948 * 5.47775 * 4 3 2 7 7 C 1.39752 * 120.26112 * 314.46990 * 6 4 3 8 8 C 1.37481 * 120.19535 * 179.57432 * 7 6 4 9 9 C 1.39579 * 120.42774 * 0.51325 * 8 7 6 10 10 C 1.39181 * 119.11062 * 0.11486 * 9 8 7 11 11 C 1.37304 * 120.93142 * 359.43214 * 10 9 8 12 12 C 1.51678 * 107.00598 * 179.01364 * 10 9 8 13 13 H 1.08996 * 110.94460 * 102.99945 * 12 10 9 14 14 C 1.53003 * 110.94158 * 226.69723 * 12 10 9 15 15 C 1.54706 * 101.91842 * 344.84862 * 12 10 9 16 16 O 1.36003 * 129.73016 * 180.69796 * 9 8 7 17 17 C 1.46503 * 120.00056 * 277.62794 * 3 2 1 18 18 H 1.08996 * 110.89013 * 359.30070 * 17 3 2 19 19 C 1.55164 * 111.00281 * 123.17882 * 17 3 2 20 20 C 1.54322 * 102.94334 * 153.57438 * 19 17 3 21 21 N 1.47021 * 107.27321 * 337.81025 * 20 19 17 22 22 C 1.36931 * 125.65360 * 178.90480 * 21 20 19 23 23 H 1.08000 * 120.00478 * 180.02562 * 22 21 20 24 24 C 1.38817 * 119.99702 * 0.02726 * 22 21 20 25 25 N 1.31621 * 120.00031 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00047 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47419 * 59.99371 * 26 24 22 28 28 H 1.48496 * 109.47043 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46858 * 299.99478 * 26 24 22 30 30 C 1.47478 * 108.72201 * 358.97013 * 21 20 19 31 31 H 1.08998 * 109.47457 * 69.73295 * 1 2 3 32 32 H 1.09002 * 109.46419 * 189.73153 * 1 2 3 33 33 H 1.08996 * 109.47172 * 309.73096 * 1 2 3 34 34 H 1.09001 * 109.47196 * 240.00687 * 2 1 3 35 35 H 1.08994 * 109.47694 * 120.00416 * 2 1 3 36 36 H 1.07999 * 119.90555 * 359.80655 * 7 6 4 37 37 H 1.08006 * 119.78443 * 180.27694 * 8 7 6 38 38 H 1.07999 * 120.07454 * 180.36648 * 11 10 9 39 39 H 1.08999 * 109.46994 * 59.99698 * 14 12 10 40 40 H 1.09005 * 109.46598 * 179.97438 * 14 12 10 41 41 H 1.08992 * 109.46819 * 299.99459 * 14 12 10 42 42 H 1.08999 * 110.74676 * 266.96056 * 15 12 10 43 43 H 1.08998 * 110.90374 * 143.68501 * 15 12 10 44 44 H 1.08999 * 110.71933 * 271.93982 * 19 17 3 45 45 H 1.09001 * 110.71805 * 35.03549 * 19 17 3 46 46 H 1.09003 * 109.87972 * 97.22109 * 20 19 17 47 47 H 1.08993 * 109.88219 * 218.23788 * 20 19 17 48 48 H 0.96994 * 120.00005 * 180.02562 * 25 24 22 49 49 H 1.08993 * 110.34876 * 265.25543 * 30 21 20 50 50 H 1.08995 * 110.40426 * 142.91407 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3890 1.9649 1.1568 5 8 2.6943 3.1417 1.1735 6 6 2.4184 1.1771 2.4048 7 6 1.3536 0.3321 2.7294 8 6 1.3863 -0.4076 3.8878 9 6 2.4759 -0.3148 4.7553 10 6 3.5272 0.5383 4.4330 11 6 3.5089 1.2746 3.2742 12 6 4.5367 0.4442 5.5611 13 1 5.3882 -0.1715 5.2717 14 6 4.9952 1.8357 6.0022 15 6 3.7098 -0.2437 6.6731 16 8 2.7095 -0.9600 5.9295 17 6 2.1037 2.1280 -1.2575 18 1 1.7803 1.5131 -2.0974 19 6 1.2816 3.4417 -1.1811 20 6 1.9955 4.3560 -2.1989 21 7 3.3621 3.8400 -2.3657 22 6 4.3147 4.3590 -3.2012 23 1 5.2935 3.9052 -3.2522 24 6 4.0225 5.4685 -3.9826 25 7 2.8296 6.0213 -3.9208 26 14 5.3219 6.1761 -5.1230 27 1 5.7330 5.1426 -6.1068 28 1 4.7634 7.3492 -5.8422 29 1 6.5019 6.5989 -4.3268 30 6 3.5369 2.6698 -1.4853 31 1 -0.3634 0.3560 -0.9640 32 1 -0.3632 -1.0129 0.1737 33 1 -0.3633 0.6568 0.7903 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.5043 0.2571 2.0665 37 1 0.5619 -1.0620 4.1299 38 1 4.3349 1.9279 3.0349 39 1 4.1351 2.4087 6.3489 40 1 5.7182 1.7401 6.8124 41 1 5.4585 2.3494 5.1600 42 1 3.2487 0.4975 7.3259 43 1 4.3290 -0.9315 7.2491 44 1 0.2475 3.2674 -1.4783 45 1 1.3267 3.8671 -0.1785 46 1 1.4701 4.3291 -3.1536 47 1 2.0262 5.3780 -1.8213 48 1 2.6254 6.7963 -4.4670 49 1 3.9835 2.9715 -0.5380 50 1 4.1542 1.9158 -1.9736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033931747.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:03 Heat of formation + Delta-G solvation = 7.350448 kcal Electronic energy + Delta-G solvation = -30912.117074 eV Core-core repulsion = 26906.326423 eV Total energy + Delta-G solvation = -4005.790651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57258 -40.19864 -37.60689 -36.49614 -35.55744 -34.41636 -32.37771 -30.76804 -30.39983 -29.97064 -28.89137 -27.08961 -26.89091 -24.67382 -23.93790 -23.26589 -22.76336 -21.13196 -20.93835 -19.96250 -18.81643 -17.86432 -17.24970 -16.87974 -16.58387 -16.37856 -15.62177 -15.03798 -14.81983 -14.60402 -14.46641 -14.30738 -14.02669 -13.86749 -13.56174 -13.41709 -13.13938 -12.94413 -12.84164 -12.61914 -12.46950 -12.17770 -11.99360 -11.95043 -11.74845 -11.64824 -11.54852 -11.37378 -11.01529 -10.85477 -10.83676 -10.76586 -10.59179 -10.27439 -10.04780 -9.84047 -9.58168 -9.17058 -9.09963 -8.53201 -8.38017 -8.26483 -6.68830 -5.60346 -2.93091 0.81063 1.08266 2.76405 2.99294 3.11261 3.46811 3.50597 3.52212 3.55470 3.99459 4.19097 4.49008 4.49249 4.59863 4.61968 4.80763 4.86530 4.97417 5.00063 5.08870 5.11638 5.20369 5.28438 5.33794 5.40259 5.50889 5.55703 5.59452 5.61010 5.65547 5.68544 5.77025 5.83238 5.88510 5.90869 5.96413 6.05264 6.11174 6.19963 6.23651 6.32629 6.57802 6.65872 6.73820 6.82446 6.85050 7.25080 7.62960 7.68331 7.79984 7.94603 8.36632 8.44682 9.32846 9.93175 10.60522 11.51233 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.002701 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.746886 B =10364.962507 C =11557.183185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.094 3.906 3 N -0.597 5.597 4 C 0.557 3.443 5 O -0.510 6.510 6 C -0.149 4.149 7 C -0.069 4.069 8 C -0.145 4.145 9 C 0.121 3.879 10 C -0.177 4.177 11 C -0.016 4.016 12 C -0.080 4.080 13 H 0.098 0.902 14 C -0.143 4.143 15 C 0.054 3.946 16 O -0.304 6.304 17 C 0.132 3.868 18 H 0.092 0.908 19 C -0.156 4.156 20 C 0.186 3.814 21 N -0.601 5.601 22 C -0.224 4.224 23 H 0.076 0.924 24 C -0.010 4.010 25 N -0.922 5.922 26 Si 0.912 3.088 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.129 3.871 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.150 0.850 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.053 0.947 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.042 0.958 48 H 0.252 0.748 49 H 0.038 0.962 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.235 -17.481 20.003 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.030 4.030 3 N -0.330 5.330 4 C 0.344 3.656 5 O -0.385 6.385 6 C -0.152 4.152 7 C -0.087 4.087 8 C -0.164 4.164 9 C 0.075 3.925 10 C -0.178 4.178 11 C -0.035 4.035 12 C -0.098 4.098 13 H 0.116 0.884 14 C -0.200 4.200 15 C -0.021 4.021 16 O -0.217 6.217 17 C 0.029 3.971 18 H 0.110 0.890 19 C -0.195 4.195 20 C 0.061 3.939 21 N -0.328 5.328 22 C -0.352 4.352 23 H 0.094 0.906 24 C -0.206 4.206 25 N -0.570 5.570 26 Si 0.742 3.258 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.002 3.998 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.167 0.833 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.055 0.945 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.145 -16.855 19.934 26.294 hybrid contribution 0.719 0.406 -0.620 1.032 sum -2.426 -16.450 19.315 25.486 Atomic orbital electron populations 1.22373 0.96033 1.02065 1.03069 1.21815 0.94364 0.83105 1.03680 1.47877 1.64285 1.13644 1.07150 1.18130 0.77704 0.86874 0.82856 1.90853 1.47041 1.15078 1.85550 1.19874 0.97059 1.01269 0.97008 1.21595 0.98405 0.92962 0.95695 1.20159 0.97065 1.04188 0.94940 1.19801 0.93884 0.91723 0.87098 1.20622 0.96673 1.02419 0.98047 1.20252 0.97258 0.95415 0.90535 1.21393 0.97418 0.98812 0.92161 0.88385 1.21751 1.01694 0.94559 1.02001 1.23998 0.88316 0.95910 0.93853 1.86793 1.58552 1.47556 1.28822 1.22406 0.98795 0.92687 0.83213 0.89026 1.23295 0.97625 0.95960 1.02658 1.21039 0.83913 0.94486 0.94507 1.44322 1.11072 1.30545 1.46872 1.18999 0.92531 1.08939 1.14772 0.90639 1.24790 0.97050 0.98406 1.00333 1.69965 1.19541 1.24216 1.43312 0.86199 0.80644 0.78393 0.80528 1.21270 1.21647 1.21246 1.21809 0.92970 0.90126 0.94909 0.91573 0.91369 0.91900 0.90342 0.89558 0.83278 0.84945 0.84912 0.91984 0.91824 0.91369 0.90275 0.87513 0.92866 0.90102 0.93864 0.93994 0.93813 0.94455 0.94937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.14 37.16 0.34 -1.21 16 2 C 0.09 0.98 5.55 -4.04 -0.02 0.96 16 3 N -0.60 -8.98 2.57 -164.86 -0.42 -9.40 16 4 C 0.56 9.22 6.53 -12.44 -0.08 9.14 16 5 O -0.51 -10.72 13.06 5.29 0.07 -10.65 16 6 C -0.15 -1.98 5.08 -104.92 -0.53 -2.51 16 7 C -0.07 -0.72 7.39 -39.29 -0.29 -1.01 16 8 C -0.14 -1.43 10.05 -39.36 -0.40 -1.83 16 9 C 0.12 1.30 7.04 -38.73 -0.27 1.03 16 10 C -0.18 -1.92 5.68 -104.13 -0.59 -2.51 16 11 C -0.02 -0.20 9.57 -39.34 -0.38 -0.58 16 12 C -0.08 -0.63 3.73 -90.39 -0.34 -0.97 16 13 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 14 C -0.14 -1.02 9.19 37.16 0.34 -0.68 16 15 C 0.05 0.38 7.55 38.05 0.29 0.67 16 16 O -0.30 -3.08 11.10 -19.75 -0.22 -3.29 16 17 C 0.13 2.45 3.54 -65.77 -0.23 2.21 16 18 H 0.09 1.57 7.97 -51.93 -0.41 1.16 16 19 C -0.16 -3.25 6.30 -24.89 -0.16 -3.40 16 20 C 0.19 4.84 5.37 -3.07 -0.02 4.83 16 21 N -0.60 -16.41 3.40 -170.04 -0.58 -16.99 16 22 C -0.22 -6.56 10.28 -15.06 -0.15 -6.72 16 23 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 24 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 25 N -0.92 -28.21 10.31 55.49 0.57 -27.63 16 26 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 C 0.13 2.92 6.61 -2.50 -0.02 2.91 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.58 6.33 -51.93 -0.33 0.25 16 34 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 35 H 0.09 0.82 5.10 -51.93 -0.27 0.55 16 36 H 0.15 1.34 3.71 -52.49 -0.19 1.15 16 37 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 43 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.79 5.78 -51.93 -0.30 1.49 16 46 H 0.04 1.21 7.38 -51.93 -0.38 0.82 16 47 H 0.04 1.23 7.51 -51.93 -0.39 0.84 16 48 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.04 0.92 6.01 -51.93 -0.31 0.60 16 50 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -35.08 386.60 -9.99 -45.07 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -7.61 Total: -0.73 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.61 Total: -0.05 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.43 Total: -54.03 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.15 Total: -13.95 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.08 -9.99 -45.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033931747.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.416 kcal (2) G-P(sol) polarization free energy of solvation -35.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds