Wall clock time and date at job start Wed Apr 1 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47014 * 2 1 4 4 C 1.34774 * 120.00169 * 97.62909 * 3 2 1 5 5 O 1.21584 * 120.00209 * 185.75703 * 4 3 2 6 6 C 1.47608 * 119.99948 * 5.47775 * 4 3 2 7 7 C 1.39752 * 120.26112 * 314.46990 * 6 4 3 8 8 C 1.37481 * 120.19535 * 179.57432 * 7 6 4 9 9 C 1.39579 * 120.42774 * 0.51325 * 8 7 6 10 10 C 1.39181 * 119.11062 * 0.11486 * 9 8 7 11 11 C 1.37304 * 120.93142 * 359.43214 * 10 9 8 12 12 C 1.51678 * 107.00598 * 179.01364 * 10 9 8 13 13 H 1.08996 * 110.94460 * 102.99945 * 12 10 9 14 14 C 1.53003 * 110.94158 * 226.69723 * 12 10 9 15 15 C 1.54706 * 101.91842 * 344.84862 * 12 10 9 16 16 O 1.36003 * 129.73016 * 180.69796 * 9 8 7 17 17 C 1.46503 * 120.00056 * 277.62794 * 3 2 1 18 18 H 1.08996 * 110.89013 * 359.30070 * 17 3 2 19 19 C 1.55164 * 111.00281 * 123.17882 * 17 3 2 20 20 C 1.54322 * 102.94334 * 153.57438 * 19 17 3 21 21 N 1.47021 * 107.27321 * 337.81025 * 20 19 17 22 22 C 1.36931 * 125.65360 * 178.90480 * 21 20 19 23 23 H 1.08000 * 120.00478 * 180.02562 * 22 21 20 24 24 C 1.38817 * 119.99702 * 0.02726 * 22 21 20 25 25 N 1.31621 * 120.00031 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00047 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47419 * 59.99371 * 26 24 22 28 28 H 1.48496 * 109.47043 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46858 * 299.99478 * 26 24 22 30 30 C 1.47478 * 108.72201 * 358.97013 * 21 20 19 31 31 H 1.08998 * 109.47457 * 69.73295 * 1 2 3 32 32 H 1.09002 * 109.46419 * 189.73153 * 1 2 3 33 33 H 1.08996 * 109.47172 * 309.73096 * 1 2 3 34 34 H 1.09001 * 109.47196 * 240.00687 * 2 1 3 35 35 H 1.08994 * 109.47694 * 120.00416 * 2 1 3 36 36 H 1.07999 * 119.90555 * 359.80655 * 7 6 4 37 37 H 1.08006 * 119.78443 * 180.27694 * 8 7 6 38 38 H 1.07999 * 120.07454 * 180.36648 * 11 10 9 39 39 H 1.08999 * 109.46994 * 59.99698 * 14 12 10 40 40 H 1.09005 * 109.46598 * 179.97438 * 14 12 10 41 41 H 1.08992 * 109.46819 * 299.99459 * 14 12 10 42 42 H 1.08999 * 110.74676 * 266.96056 * 15 12 10 43 43 H 1.08998 * 110.90374 * 143.68501 * 15 12 10 44 44 H 1.08999 * 110.71933 * 271.93982 * 19 17 3 45 45 H 1.09001 * 110.71805 * 35.03549 * 19 17 3 46 46 H 1.09003 * 109.87972 * 97.22109 * 20 19 17 47 47 H 1.08993 * 109.88219 * 218.23788 * 20 19 17 48 48 H 0.96994 * 120.00005 * 180.02562 * 25 24 22 49 49 H 1.08993 * 110.34876 * 265.25543 * 30 21 20 50 50 H 1.08995 * 110.40426 * 142.91407 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3890 1.9649 1.1568 5 8 2.6943 3.1417 1.1735 6 6 2.4184 1.1771 2.4048 7 6 1.3536 0.3321 2.7294 8 6 1.3863 -0.4076 3.8878 9 6 2.4759 -0.3148 4.7553 10 6 3.5272 0.5383 4.4330 11 6 3.5089 1.2746 3.2742 12 6 4.5367 0.4442 5.5611 13 1 5.3882 -0.1715 5.2717 14 6 4.9952 1.8357 6.0022 15 6 3.7098 -0.2437 6.6731 16 8 2.7095 -0.9600 5.9295 17 6 2.1037 2.1280 -1.2575 18 1 1.7803 1.5131 -2.0974 19 6 1.2816 3.4417 -1.1811 20 6 1.9955 4.3560 -2.1989 21 7 3.3621 3.8400 -2.3657 22 6 4.3147 4.3590 -3.2012 23 1 5.2935 3.9052 -3.2522 24 6 4.0225 5.4685 -3.9826 25 7 2.8296 6.0213 -3.9208 26 14 5.3219 6.1761 -5.1230 27 1 5.7330 5.1426 -6.1068 28 1 4.7634 7.3492 -5.8422 29 1 6.5019 6.5989 -4.3268 30 6 3.5369 2.6698 -1.4853 31 1 -0.3634 0.3560 -0.9640 32 1 -0.3632 -1.0129 0.1737 33 1 -0.3633 0.6568 0.7903 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.5043 0.2571 2.0665 37 1 0.5619 -1.0620 4.1299 38 1 4.3349 1.9279 3.0349 39 1 4.1351 2.4087 6.3489 40 1 5.7182 1.7401 6.8124 41 1 5.4585 2.3494 5.1600 42 1 3.2487 0.4975 7.3259 43 1 4.3290 -0.9315 7.2491 44 1 0.2475 3.2674 -1.4783 45 1 1.3267 3.8671 -0.1785 46 1 1.4701 4.3291 -3.1536 47 1 2.0262 5.3780 -1.8213 48 1 2.6254 6.7963 -4.4670 49 1 3.9835 2.9715 -0.5380 50 1 4.1542 1.9158 -1.9736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033931747.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:02 Heat of formation + Delta-G solvation = -14.027472 kcal Electronic energy + Delta-G solvation = -30913.044090 eV Core-core repulsion = 26906.326423 eV Total energy + Delta-G solvation = -4006.717667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.37780 -41.42090 -38.91568 -37.88622 -36.85026 -35.12933 -34.32171 -31.85208 -31.63647 -30.78138 -30.69537 -28.74423 -27.54330 -26.57234 -25.09330 -24.07049 -23.68661 -22.49497 -22.00316 -21.78427 -20.01306 -18.96679 -18.60743 -18.26281 -17.64772 -17.13495 -16.83264 -16.75960 -16.27832 -15.86768 -15.62356 -15.49800 -15.09969 -14.75092 -14.67649 -14.46614 -14.32404 -14.20594 -14.17272 -13.73660 -13.64540 -13.55220 -13.26080 -13.10805 -12.92588 -12.73874 -12.72221 -12.57927 -12.30883 -12.16432 -12.10818 -12.08073 -12.03573 -11.84291 -11.75263 -11.62904 -11.47141 -10.73264 -10.56690 -10.00452 -9.68373 -9.19574 -8.89157 -7.85420 -5.22210 -0.10059 0.24424 1.43036 1.48163 1.54284 1.63746 1.92167 2.23796 2.49559 2.63518 3.29768 3.32674 3.41196 3.60372 3.70115 3.76597 3.91690 3.98183 4.00512 4.08185 4.12639 4.19758 4.24896 4.39667 4.42465 4.48629 4.53322 4.54893 4.65424 4.68105 4.71017 4.78437 4.86794 4.90527 4.99549 5.00739 5.01763 5.02754 5.08074 5.15598 5.22922 5.27559 5.30417 5.37739 5.40729 5.48348 5.63697 5.68332 5.76156 6.07985 6.17409 6.44730 7.07711 7.18315 7.74542 8.40834 9.24929 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.002701 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.746886 B =10364.962507 C =11557.183185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.087 3.913 3 N -0.591 5.591 4 C 0.554 3.446 5 O -0.568 6.568 6 C -0.167 4.167 7 C -0.058 4.058 8 C -0.140 4.140 9 C 0.118 3.882 10 C -0.183 4.183 11 C -0.032 4.032 12 C -0.080 4.080 13 H 0.108 0.892 14 C -0.141 4.141 15 C 0.053 3.947 16 O -0.311 6.311 17 C 0.153 3.847 18 H 0.116 0.884 19 C -0.141 4.141 20 C 0.196 3.804 21 N -0.622 5.622 22 C -0.247 4.247 23 H 0.081 0.919 24 C -0.068 4.068 25 N -0.952 5.952 26 Si 0.984 3.016 27 H -0.271 1.271 28 H -0.292 1.292 29 H -0.280 1.280 30 C 0.126 3.874 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.114 0.886 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.137 0.863 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.020 0.980 47 H -0.006 1.006 48 H 0.248 0.752 49 H 0.016 0.984 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.721 -20.792 21.330 30.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.034 4.034 3 N -0.323 5.323 4 C 0.344 3.656 5 O -0.448 6.448 6 C -0.171 4.171 7 C -0.075 4.075 8 C -0.158 4.158 9 C 0.072 3.928 10 C -0.184 4.184 11 C -0.051 4.051 12 C -0.098 4.098 13 H 0.126 0.874 14 C -0.198 4.198 15 C -0.021 4.021 16 O -0.225 6.225 17 C 0.049 3.951 18 H 0.134 0.866 19 C -0.180 4.180 20 C 0.071 3.929 21 N -0.349 5.349 22 C -0.375 4.375 23 H 0.098 0.902 24 C -0.260 4.260 25 N -0.601 5.601 26 Si 0.811 3.189 27 H -0.197 1.197 28 H -0.218 1.218 29 H -0.206 1.206 30 C 0.000 4.000 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.186 0.814 37 H 0.180 0.820 38 H 0.132 0.868 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.154 0.846 44 H 0.101 0.899 45 H 0.083 0.917 46 H 0.038 0.962 47 H 0.012 0.988 48 H 0.057 0.943 49 H 0.034 0.966 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.636 -20.245 21.288 29.601 hybrid contribution 0.918 1.395 -0.908 1.901 sum -2.718 -18.850 20.380 27.893 Atomic orbital electron populations 1.22358 0.94144 1.04050 1.02615 1.22184 0.95841 0.80243 1.05165 1.47906 1.63839 1.15142 1.05364 1.18694 0.76370 0.86404 0.84133 1.90824 1.49633 1.17742 1.86557 1.19655 0.98758 1.02679 0.95982 1.21721 0.97729 0.91878 0.96219 1.20469 0.97493 1.03813 0.94008 1.20060 0.93940 0.91270 0.87529 1.20860 0.97902 1.01788 0.97873 1.20185 0.97079 0.96145 0.91651 1.21506 0.97332 0.99389 0.91592 0.87450 1.21734 1.01915 0.94021 1.02117 1.24267 0.87876 0.96665 0.93324 1.86787 1.59280 1.47913 1.28520 1.22039 0.95014 0.92375 0.85704 0.86597 1.23067 0.98876 0.96038 0.99996 1.20754 0.84220 0.93457 0.94491 1.44634 1.11146 1.32030 1.47065 1.19429 0.93375 1.09521 1.15213 0.90163 1.25732 0.99374 0.98782 1.02150 1.70205 1.21498 1.24379 1.44027 0.85076 0.77817 0.77562 0.78401 1.19660 1.21750 1.20647 1.21896 0.96047 0.89031 0.93045 0.92238 0.88025 0.92278 0.88923 0.88085 0.81444 0.82018 0.86752 0.92591 0.89475 0.92981 0.89282 0.84559 0.89923 0.91664 0.96208 0.98808 0.94316 0.96608 0.93965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.14 71.98 0.66 -1.75 16 2 C 0.09 1.58 5.55 86.38 0.48 2.06 16 3 N -0.59 -17.32 2.57 -793.76 -2.04 -19.36 16 4 C 0.55 18.76 6.53 86.72 0.57 19.33 16 5 O -0.57 -25.40 13.06 -3.98 -0.05 -25.45 16 6 C -0.17 -4.42 5.08 -20.06 -0.10 -4.52 16 7 C -0.06 -1.09 7.39 22.46 0.17 -0.92 16 8 C -0.14 -2.33 10.05 22.41 0.23 -2.10 16 9 C 0.12 2.28 7.04 22.82 0.16 2.44 16 10 C -0.18 -3.82 5.68 -19.55 -0.11 -3.93 16 11 C -0.03 -0.82 9.57 22.43 0.21 -0.61 16 12 C -0.08 -1.15 3.73 -10.65 -0.04 -1.19 16 13 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 14 C -0.14 -1.91 9.19 71.98 0.66 -1.25 16 15 C 0.05 0.59 7.55 72.56 0.55 1.13 16 16 O -0.31 -5.39 11.10 -93.59 -1.04 -6.43 16 17 C 0.15 5.63 3.54 46.39 0.16 5.79 16 18 H 0.12 3.75 7.97 -2.39 -0.02 3.73 16 19 C -0.14 -5.98 6.30 31.78 0.20 -5.78 16 20 C 0.20 10.80 5.37 86.73 0.47 11.26 16 21 N -0.62 -35.36 3.40 -691.88 -2.35 -37.71 16 22 C -0.25 -14.90 10.28 84.04 0.86 -14.04 16 23 H 0.08 4.62 7.83 -2.91 -0.02 4.60 16 24 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 25 N -0.95 -60.64 10.31 21.65 0.22 -60.41 16 26 Si 0.98 48.03 29.55 68.60 2.03 50.05 16 27 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 28 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 29 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 30 C 0.13 5.88 6.61 86.85 0.57 6.46 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.89 6.33 -2.39 -0.02 0.87 16 34 H 0.09 1.48 8.11 -2.39 -0.02 1.46 16 35 H 0.10 1.60 5.10 -2.39 -0.01 1.58 16 36 H 0.17 2.47 3.71 -2.91 -0.01 2.46 16 37 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.11 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.05 0.82 8.07 -2.39 -0.02 0.80 16 40 H 0.09 0.75 8.14 -2.38 -0.02 0.74 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 0.83 7.86 -2.39 -0.02 0.81 16 43 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.06 3.02 5.78 -2.39 -0.01 3.01 16 46 H 0.02 1.16 7.38 -2.39 -0.02 1.14 16 47 H -0.01 -0.40 7.51 -2.39 -0.02 -0.42 16 48 H 0.25 15.24 8.31 -92.71 -0.77 14.46 16 49 H 0.02 0.83 6.01 -2.39 -0.01 0.81 16 50 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -81.88 386.60 3.88 -78.00 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.95 Total: 12.55 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.16 Total: 8.76 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -4.16 Total: -117.48 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.09 Total: -31.88 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.05 kcal Total: -81.88 3.88 -78.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033931747.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.971 kcal (2) G-P(sol) polarization free energy of solvation -81.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds