Wall clock time and date at job start Wed Apr 1 2020 02:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46906 * 2 1 4 4 C 1.34774 * 119.99680 * 97.55249 * 3 2 1 5 5 O 1.21586 * 119.99914 * 185.63873 * 4 3 2 6 6 C 1.47603 * 120.00171 * 5.63381 * 4 3 2 7 7 C 1.39748 * 120.26809 * 314.52074 * 6 4 3 8 8 C 1.37473 * 120.20240 * 180.16608 * 7 6 4 9 9 C 1.39587 * 120.43190 * 0.02562 * 8 7 6 10 10 C 1.39180 * 119.10069 * 359.70358 * 9 8 7 11 11 C 1.37303 * 120.93703 * 0.21336 * 10 9 8 12 12 C 1.51678 * 106.99276 * 180.46147 * 10 9 8 13 13 C 1.54707 * 101.87933 * 15.69097 * 12 10 9 14 14 H 1.08996 * 110.74026 * 216.25525 * 13 12 10 15 15 C 1.53003 * 110.73693 * 92.92441 * 13 12 10 16 16 O 1.35991 * 129.70912 * 179.46837 * 9 8 7 17 17 C 1.46493 * 120.00246 * 277.55177 * 3 2 1 18 18 H 1.09004 * 110.64519 * 1.68431 * 17 3 2 19 19 C 1.55159 * 110.72284 * 125.02621 * 17 3 2 20 20 C 1.54905 * 101.58209 * 153.86373 * 19 17 3 21 21 N 1.47421 * 104.83384 * 322.99282 * 20 19 17 22 22 C 1.36943 * 125.64568 * 204.16874 * 21 20 19 23 23 H 1.08002 * 119.99709 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00344 * 359.95233 * 22 21 20 25 25 N 1.31613 * 119.99722 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99960 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47298 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47332 * 120.00064 * 26 24 22 29 29 H 1.48508 * 109.46990 * 239.99929 * 26 24 22 30 30 C 1.47014 * 108.70539 * 24.12688 * 21 20 19 31 31 H 1.09000 * 109.46888 * 189.49580 * 1 2 3 32 32 H 1.09001 * 109.47224 * 309.49753 * 1 2 3 33 33 H 1.09005 * 109.47139 * 69.49699 * 1 2 3 34 34 H 1.09006 * 109.46962 * 240.00566 * 2 1 3 35 35 H 1.08991 * 109.47083 * 120.00301 * 2 1 3 36 36 H 1.08003 * 119.90373 * 0.18474 * 7 6 4 37 37 H 1.08003 * 119.78221 * 179.97438 * 8 7 6 38 38 H 1.08009 * 120.06869 * 179.97438 * 11 10 9 39 39 H 1.08994 * 110.95228 * 133.84168 * 12 10 9 40 40 H 1.09001 * 110.94768 * 257.51581 * 12 10 9 41 41 H 1.08995 * 109.47101 * 60.00351 * 15 13 12 42 42 H 1.09002 * 109.46742 * 180.02562 * 15 13 12 43 43 H 1.08998 * 109.47519 * 299.99534 * 15 13 12 44 44 H 1.09003 * 111.00274 * 271.93996 * 19 17 3 45 45 H 1.08991 * 111.00066 * 35.78778 * 19 17 3 46 46 H 1.08997 * 110.36746 * 204.14819 * 20 19 17 47 47 H 1.09007 * 110.46131 * 81.87552 * 20 19 17 48 48 H 0.97005 * 119.99970 * 180.02562 * 25 24 22 49 49 H 1.09001 * 109.88656 * 239.52859 * 30 21 20 50 50 H 1.09003 * 109.88492 * 118.36016 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3876 1.9654 1.1571 5 8 2.6950 3.1416 1.1733 6 6 2.4187 1.1773 2.4047 7 6 1.3565 0.3288 2.7286 8 6 1.3853 -0.4020 3.8926 9 6 2.4730 -0.3044 4.7619 10 6 3.5305 0.5379 4.4312 11 6 3.5125 1.2709 3.2703 12 6 4.5527 0.4248 5.5460 13 6 4.0925 -0.8622 6.2708 14 1 4.2400 -0.7729 7.3470 15 6 4.8280 -2.0860 5.7210 16 8 2.6922 -0.9244 5.9523 17 6 2.1053 2.1275 -1.2576 18 1 1.7426 1.5230 -2.0890 19 6 1.3192 3.4616 -1.1599 20 6 2.0597 4.3360 -2.2023 21 7 3.4780 3.9540 -2.0761 22 6 4.5486 4.7342 -2.4232 23 1 5.5536 4.3615 -2.2911 24 6 4.3420 6.0037 -2.9453 25 7 3.1172 6.4577 -3.1062 26 14 5.8024 7.0675 -3.4194 27 1 7.0619 6.3315 -3.1416 28 1 5.7281 7.3940 -4.8661 29 1 5.7783 8.3231 -2.6267 30 6 3.5527 2.5972 -1.5149 31 1 -0.3633 -1.0136 0.1695 32 1 -0.3634 0.6536 0.7930 33 1 -0.3634 0.3600 -0.9626 34 1 1.8934 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 0.5105 0.2467 2.0622 37 1 0.5606 -1.0553 4.1364 38 1 4.3406 1.9206 3.0277 39 1 5.5582 0.3064 5.1423 40 1 4.5009 1.2868 6.2111 41 1 5.9006 -1.9626 5.8703 42 1 4.4884 -2.9796 6.2448 43 1 4.6187 -2.1879 4.6562 44 1 0.2749 3.3211 -1.4390 45 1 1.4007 3.8908 -0.1614 46 1 1.9296 5.3933 -1.9716 47 1 1.6968 4.1203 -3.2073 48 1 2.9729 7.3447 -3.4714 49 1 4.1090 2.6137 -0.5777 50 1 4.0387 1.9284 -2.2253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033991007.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:35 Heat of formation + Delta-G solvation = 10.126969 kcal Electronic energy + Delta-G solvation = -30974.599701 eV Core-core repulsion = 26968.929449 eV Total energy + Delta-G solvation = -4005.670252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.56784 -40.19111 -37.64985 -36.47085 -35.51505 -33.47084 -32.41958 -31.14004 -30.57130 -30.24958 -28.89172 -27.35562 -26.81725 -24.62333 -23.84479 -22.92748 -22.22477 -21.88647 -20.90485 -20.04749 -18.72740 -17.54268 -17.25127 -16.87603 -16.70583 -16.24541 -15.53289 -15.07107 -14.71158 -14.60645 -14.49454 -14.22134 -13.94052 -13.84973 -13.48015 -13.14222 -13.10265 -12.96007 -12.83843 -12.72501 -12.55787 -12.42198 -12.05116 -11.90236 -11.65016 -11.56495 -11.45107 -11.37099 -10.98604 -10.96245 -10.86735 -10.76681 -10.68604 -10.44028 -9.99583 -9.72812 -9.46589 -9.12192 -9.05603 -8.53169 -8.34698 -8.23952 -6.68094 -5.52414 -2.92823 0.85236 1.11748 2.84150 2.93781 3.17409 3.47475 3.52416 3.55232 3.59220 4.07285 4.22638 4.47412 4.54099 4.60747 4.61644 4.75719 4.82747 4.90102 5.02402 5.11404 5.17921 5.24270 5.30013 5.37823 5.45307 5.47508 5.50412 5.59607 5.60763 5.64804 5.69059 5.69946 5.80295 5.87335 5.92328 5.97744 6.07137 6.14061 6.23461 6.28972 6.39652 6.62352 6.67081 6.71935 6.85773 6.90159 7.26358 7.60565 7.73144 7.76621 7.99800 8.48602 8.52724 9.34836 9.96069 10.61358 11.51559 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.002812 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.693394 B = 9954.155975 C =11217.704702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.094 3.906 3 N -0.599 5.599 4 C 0.554 3.446 5 O -0.500 6.500 6 C -0.148 4.148 7 C -0.070 4.070 8 C -0.146 4.146 9 C 0.121 3.879 10 C -0.180 4.180 11 C -0.019 4.019 12 C -0.106 4.106 13 C 0.076 3.924 14 H 0.116 0.884 15 C -0.171 4.171 16 O -0.299 6.299 17 C 0.136 3.864 18 H 0.088 0.912 19 C -0.159 4.159 20 C 0.158 3.842 21 N -0.596 5.596 22 C -0.213 4.213 23 H 0.075 0.925 24 C -0.014 4.014 25 N -0.923 5.923 26 Si 0.913 3.087 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.291 1.291 30 C 0.134 3.866 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.150 0.850 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.009 0.991 48 H 0.250 0.750 49 H 0.031 0.969 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 -20.506 16.736 26.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.029 4.029 3 N -0.333 5.333 4 C 0.341 3.659 5 O -0.375 6.375 6 C -0.151 4.151 7 C -0.088 4.088 8 C -0.165 4.165 9 C 0.076 3.924 10 C -0.181 4.181 11 C -0.037 4.037 12 C -0.143 4.143 13 C 0.021 3.979 14 H 0.134 0.866 15 C -0.229 4.229 16 O -0.213 6.213 17 C 0.033 3.967 18 H 0.106 0.894 19 C -0.198 4.198 20 C 0.033 3.967 21 N -0.322 5.322 22 C -0.342 4.342 23 H 0.093 0.907 24 C -0.209 4.209 25 N -0.572 5.572 26 Si 0.744 3.256 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.218 1.218 30 C 0.007 3.993 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.167 0.833 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.124 0.876 47 H 0.027 0.973 48 H 0.061 0.939 49 H 0.049 0.951 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.390 -19.785 16.795 26.172 hybrid contribution 0.819 0.455 -0.325 0.992 sum -2.571 -19.331 16.470 25.525 Atomic orbital electron populations 1.22376 0.96087 1.02040 1.03037 1.21805 0.94324 0.83220 1.03594 1.47905 1.64704 1.13563 1.07086 1.18142 0.77905 0.86987 0.82828 1.90900 1.46258 1.14920 1.85421 1.19886 0.96751 1.01224 0.97261 1.21592 0.98328 0.93041 0.95823 1.20161 0.98505 1.04269 0.93542 1.19791 0.95273 0.91597 0.85786 1.20613 0.98294 1.01477 0.97703 1.20288 0.97314 0.95496 0.90641 1.21877 0.99059 0.98161 0.95189 1.23453 0.78664 0.94955 1.00870 0.86598 1.22253 1.00652 0.97596 1.02374 1.86833 1.26832 1.74417 1.33244 1.22195 0.98057 0.93065 0.83363 0.89362 1.23497 0.97145 0.95468 1.03667 1.21838 0.81954 1.00424 0.92518 1.44308 1.02718 1.11407 1.73776 1.19098 0.85968 0.95299 1.33830 0.90678 1.24760 0.96690 0.97505 1.01926 1.69815 1.17862 1.18063 1.51466 0.86006 0.81432 0.80483 0.77651 1.20634 1.21887 1.21827 1.21462 0.93135 0.88211 0.96452 0.91414 0.91860 0.91637 0.90460 0.89586 0.83323 0.85030 0.84867 0.88741 0.88896 0.90530 0.91349 0.91693 0.93048 0.89384 0.87600 0.97325 0.93945 0.95073 0.96546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.13 37.16 0.34 -1.21 16 2 C 0.09 0.99 5.54 -4.04 -0.02 0.97 16 3 N -0.60 -9.18 2.54 -165.22 -0.42 -9.60 16 4 C 0.55 9.55 6.35 -12.44 -0.08 9.47 16 5 O -0.50 -11.10 13.39 5.29 0.07 -11.03 16 6 C -0.15 -2.05 5.08 -104.93 -0.53 -2.58 16 7 C -0.07 -0.77 7.40 -39.30 -0.29 -1.06 16 8 C -0.15 -1.50 10.05 -39.36 -0.40 -1.89 16 9 C 0.12 1.35 6.92 -38.73 -0.27 1.08 16 10 C -0.18 -2.03 6.25 -104.13 -0.65 -2.68 16 11 C -0.02 -0.25 9.69 -39.33 -0.38 -0.63 16 12 C -0.11 -0.87 6.65 -26.50 -0.18 -1.04 16 13 C 0.08 0.56 4.31 -25.83 -0.11 0.45 16 14 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 15 C -0.17 -1.06 9.51 37.16 0.35 -0.70 16 16 O -0.30 -3.12 10.80 -19.71 -0.21 -3.33 16 17 C 0.14 2.51 3.44 -66.10 -0.23 2.29 16 18 H 0.09 1.45 7.97 -51.93 -0.41 1.03 16 19 C -0.16 -3.34 6.40 -24.58 -0.16 -3.50 16 20 C 0.16 4.10 5.89 -2.53 -0.01 4.09 16 21 N -0.60 -16.38 3.39 -170.08 -0.58 -16.96 16 22 C -0.21 -6.32 10.27 -15.06 -0.15 -6.48 16 23 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 24 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 25 N -0.92 -28.20 10.09 55.49 0.56 -27.64 16 26 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 30 C 0.13 3.06 6.52 -3.07 -0.02 3.04 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.59 6.34 -51.93 -0.33 0.26 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 35 H 0.09 0.82 5.09 -51.93 -0.26 0.56 16 36 H 0.15 1.39 3.68 -52.48 -0.19 1.20 16 37 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 38 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 39 H 0.09 0.65 7.92 -51.93 -0.41 0.24 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.09 2.05 5.61 -51.93 -0.29 1.76 16 46 H 0.11 3.13 5.87 -51.93 -0.30 2.82 16 47 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 48 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.03 0.76 6.45 -51.93 -0.33 0.42 16 50 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -35.45 386.64 -10.24 -45.70 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.58 Total: -0.16 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.89 Total: -0.88 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.44 Total: -54.21 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.14 Total: -14.37 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.45 -10.24 -45.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033991007.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.822 kcal (2) G-P(sol) polarization free energy of solvation -35.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds