Wall clock time and date at job start Wed Apr 1 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46906 * 2 1 4 4 C 1.34774 * 119.99680 * 97.55249 * 3 2 1 5 5 O 1.21586 * 119.99914 * 185.63873 * 4 3 2 6 6 C 1.47603 * 120.00171 * 5.63381 * 4 3 2 7 7 C 1.39748 * 120.26809 * 314.52074 * 6 4 3 8 8 C 1.37473 * 120.20240 * 180.16608 * 7 6 4 9 9 C 1.39587 * 120.43190 * 0.02562 * 8 7 6 10 10 C 1.39180 * 119.10069 * 359.70358 * 9 8 7 11 11 C 1.37303 * 120.93703 * 0.21336 * 10 9 8 12 12 C 1.51678 * 106.99276 * 180.46147 * 10 9 8 13 13 C 1.54707 * 101.87933 * 15.69097 * 12 10 9 14 14 H 1.08996 * 110.74026 * 216.25525 * 13 12 10 15 15 C 1.53003 * 110.73693 * 92.92441 * 13 12 10 16 16 O 1.35991 * 129.70912 * 179.46837 * 9 8 7 17 17 C 1.46493 * 120.00246 * 277.55177 * 3 2 1 18 18 H 1.09004 * 110.64519 * 1.68431 * 17 3 2 19 19 C 1.55159 * 110.72284 * 125.02621 * 17 3 2 20 20 C 1.54905 * 101.58209 * 153.86373 * 19 17 3 21 21 N 1.47421 * 104.83384 * 322.99282 * 20 19 17 22 22 C 1.36943 * 125.64568 * 204.16874 * 21 20 19 23 23 H 1.08002 * 119.99709 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00344 * 359.95233 * 22 21 20 25 25 N 1.31613 * 119.99722 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99960 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47298 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47332 * 120.00064 * 26 24 22 29 29 H 1.48508 * 109.46990 * 239.99929 * 26 24 22 30 30 C 1.47014 * 108.70539 * 24.12688 * 21 20 19 31 31 H 1.09000 * 109.46888 * 189.49580 * 1 2 3 32 32 H 1.09001 * 109.47224 * 309.49753 * 1 2 3 33 33 H 1.09005 * 109.47139 * 69.49699 * 1 2 3 34 34 H 1.09006 * 109.46962 * 240.00566 * 2 1 3 35 35 H 1.08991 * 109.47083 * 120.00301 * 2 1 3 36 36 H 1.08003 * 119.90373 * 0.18474 * 7 6 4 37 37 H 1.08003 * 119.78221 * 179.97438 * 8 7 6 38 38 H 1.08009 * 120.06869 * 179.97438 * 11 10 9 39 39 H 1.08994 * 110.95228 * 133.84168 * 12 10 9 40 40 H 1.09001 * 110.94768 * 257.51581 * 12 10 9 41 41 H 1.08995 * 109.47101 * 60.00351 * 15 13 12 42 42 H 1.09002 * 109.46742 * 180.02562 * 15 13 12 43 43 H 1.08998 * 109.47519 * 299.99534 * 15 13 12 44 44 H 1.09003 * 111.00274 * 271.93996 * 19 17 3 45 45 H 1.08991 * 111.00066 * 35.78778 * 19 17 3 46 46 H 1.08997 * 110.36746 * 204.14819 * 20 19 17 47 47 H 1.09007 * 110.46131 * 81.87552 * 20 19 17 48 48 H 0.97005 * 119.99970 * 180.02562 * 25 24 22 49 49 H 1.09001 * 109.88656 * 239.52859 * 30 21 20 50 50 H 1.09003 * 109.88492 * 118.36016 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3876 1.9654 1.1571 5 8 2.6950 3.1416 1.1733 6 6 2.4187 1.1773 2.4047 7 6 1.3565 0.3288 2.7286 8 6 1.3853 -0.4020 3.8926 9 6 2.4730 -0.3044 4.7619 10 6 3.5305 0.5379 4.4312 11 6 3.5125 1.2709 3.2703 12 6 4.5527 0.4248 5.5460 13 6 4.0925 -0.8622 6.2708 14 1 4.2400 -0.7729 7.3470 15 6 4.8280 -2.0860 5.7210 16 8 2.6922 -0.9244 5.9523 17 6 2.1053 2.1275 -1.2576 18 1 1.7426 1.5230 -2.0890 19 6 1.3192 3.4616 -1.1599 20 6 2.0597 4.3360 -2.2023 21 7 3.4780 3.9540 -2.0761 22 6 4.5486 4.7342 -2.4232 23 1 5.5536 4.3615 -2.2911 24 6 4.3420 6.0037 -2.9453 25 7 3.1172 6.4577 -3.1062 26 14 5.8024 7.0675 -3.4194 27 1 7.0619 6.3315 -3.1416 28 1 5.7281 7.3940 -4.8661 29 1 5.7783 8.3231 -2.6267 30 6 3.5527 2.5972 -1.5149 31 1 -0.3633 -1.0136 0.1695 32 1 -0.3634 0.6536 0.7930 33 1 -0.3634 0.3600 -0.9626 34 1 1.8934 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 0.5105 0.2467 2.0622 37 1 0.5606 -1.0553 4.1364 38 1 4.3406 1.9206 3.0277 39 1 5.5582 0.3064 5.1423 40 1 4.5009 1.2868 6.2111 41 1 5.9006 -1.9626 5.8703 42 1 4.4884 -2.9796 6.2448 43 1 4.6187 -2.1879 4.6562 44 1 0.2749 3.3211 -1.4390 45 1 1.4007 3.8908 -0.1614 46 1 1.9296 5.3933 -1.9716 47 1 1.6968 4.1203 -3.2073 48 1 2.9729 7.3447 -3.4714 49 1 4.1090 2.6137 -0.5777 50 1 4.0387 1.9284 -2.2253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033991007.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:34 Heat of formation + Delta-G solvation = -11.549161 kcal Electronic energy + Delta-G solvation = -30975.539649 eV Core-core repulsion = 26968.929449 eV Total energy + Delta-G solvation = -4006.610200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.39326 -41.43691 -38.93954 -37.91458 -36.83840 -34.40202 -34.13522 -32.11806 -31.53392 -31.45697 -30.65866 -28.79509 -27.79234 -26.54703 -24.97823 -23.88050 -23.06039 -22.56719 -22.37141 -22.07221 -19.97053 -18.98497 -18.34582 -18.25943 -17.72328 -17.14899 -16.85039 -16.65909 -16.26367 -15.87069 -15.60961 -15.46437 -15.04225 -14.89808 -14.61122 -14.44535 -14.35338 -13.96036 -13.77010 -13.73826 -13.56620 -13.42120 -13.28254 -13.18714 -12.99633 -12.99445 -12.76897 -12.65691 -12.37902 -12.21545 -12.16809 -12.04790 -11.99637 -11.85575 -11.74173 -11.69924 -11.37312 -10.76992 -10.53523 -9.99687 -9.64308 -9.18616 -8.87645 -7.77507 -5.21629 -0.09452 0.23782 1.42259 1.45390 1.55221 1.67593 1.91859 2.22705 2.49123 2.62302 3.30477 3.37738 3.42552 3.61021 3.73935 3.79856 3.90978 3.94081 3.98216 4.09878 4.13216 4.19662 4.26350 4.27447 4.40215 4.47961 4.55785 4.63666 4.68867 4.73068 4.75639 4.80174 4.85322 4.89354 4.93671 5.00752 5.02926 5.05999 5.09193 5.14890 5.23038 5.26222 5.28663 5.39958 5.42103 5.49475 5.63605 5.78006 5.80116 6.10433 6.30326 6.46007 7.09893 7.21826 7.77448 8.41738 9.24520 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.002812 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.693394 B = 9954.155975 C =11217.704702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.087 3.913 3 N -0.593 5.593 4 C 0.551 3.449 5 O -0.565 6.565 6 C -0.167 4.167 7 C -0.058 4.058 8 C -0.141 4.141 9 C 0.120 3.880 10 C -0.186 4.186 11 C -0.037 4.037 12 C -0.108 4.108 13 C 0.074 3.926 14 H 0.143 0.857 15 C -0.169 4.169 16 O -0.308 6.308 17 C 0.154 3.846 18 H 0.122 0.878 19 C -0.143 4.143 20 C 0.162 3.838 21 N -0.619 5.619 22 C -0.237 4.237 23 H 0.074 0.926 24 C -0.070 4.070 25 N -0.949 5.949 26 Si 0.983 3.017 27 H -0.268 1.268 28 H -0.285 1.285 29 H -0.292 1.292 30 C 0.132 3.868 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.065 0.935 47 H -0.002 1.002 48 H 0.247 0.753 49 H 0.009 0.991 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 -23.726 17.986 30.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.034 4.034 3 N -0.325 5.325 4 C 0.341 3.659 5 O -0.444 6.444 6 C -0.171 4.171 7 C -0.076 4.076 8 C -0.160 4.160 9 C 0.074 3.926 10 C -0.187 4.187 11 C -0.056 4.056 12 C -0.145 4.145 13 C 0.020 3.980 14 H 0.160 0.840 15 C -0.226 4.226 16 O -0.222 6.222 17 C 0.050 3.950 18 H 0.140 0.860 19 C -0.183 4.183 20 C 0.036 3.964 21 N -0.345 5.345 22 C -0.366 4.366 23 H 0.092 0.908 24 C -0.262 4.262 25 N -0.599 5.599 26 Si 0.811 3.189 27 H -0.193 1.193 28 H -0.212 1.212 29 H -0.220 1.220 30 C 0.006 3.994 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.186 0.814 37 H 0.179 0.821 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.015 0.985 48 H 0.057 0.943 49 H 0.027 0.973 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.993 -23.087 18.057 29.581 hybrid contribution 1.034 1.386 -0.615 1.836 sum -2.959 -21.701 17.442 27.998 Atomic orbital electron populations 1.22359 0.94120 1.04007 1.02657 1.22187 0.95850 0.80260 1.05151 1.47950 1.64036 1.15140 1.05329 1.18717 0.76529 0.86453 0.84225 1.90866 1.49187 1.17796 1.86536 1.19674 0.98468 1.02692 0.96246 1.21721 0.97611 0.91869 0.96395 1.20480 0.98916 1.03891 0.92677 1.20042 0.95268 0.91220 0.86086 1.20844 0.99575 1.00823 0.97478 1.20221 0.97146 0.96331 0.91884 1.22015 0.98955 0.99114 0.94380 1.23749 0.77220 0.94771 1.02305 0.83992 1.22255 1.01650 0.97357 1.01314 1.86829 1.28659 1.74063 1.32617 1.21929 0.94413 0.92762 0.85911 0.86018 1.23244 0.98603 0.95878 1.00540 1.21593 0.82322 0.99183 0.93277 1.44604 1.02797 1.13197 1.73877 1.19445 0.86792 0.96266 1.34113 0.90806 1.25670 0.99634 0.98712 1.02174 1.70083 1.19775 1.18106 1.51927 0.84940 0.78525 0.78223 0.77213 1.19270 1.21197 1.21955 1.21601 0.96184 0.86495 0.95170 0.88037 0.92470 0.92011 0.88737 0.88288 0.81403 0.82077 0.86877 0.87617 0.88282 0.88790 0.90502 0.93262 0.89843 0.91867 0.91744 0.98454 0.94339 0.97258 0.95558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.13 71.98 0.66 -1.72 16 2 C 0.09 1.58 5.54 86.38 0.48 2.05 16 3 N -0.59 -17.70 2.54 -794.88 -2.02 -19.72 16 4 C 0.55 19.52 6.35 86.72 0.55 20.07 16 5 O -0.56 -26.72 13.39 -3.99 -0.05 -26.77 16 6 C -0.17 -4.66 5.08 -20.06 -0.10 -4.76 16 7 C -0.06 -1.16 7.40 22.45 0.17 -0.99 16 8 C -0.14 -2.50 10.05 22.41 0.23 -2.27 16 9 C 0.12 2.44 6.92 22.82 0.16 2.59 16 10 C -0.19 -4.09 6.25 -19.55 -0.12 -4.22 16 11 C -0.04 -1.01 9.69 22.43 0.22 -0.79 16 12 C -0.11 -1.62 6.65 30.74 0.20 -1.41 16 13 C 0.07 0.90 4.31 31.18 0.13 1.04 16 14 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 15 C -0.17 -1.65 9.51 71.98 0.68 -0.97 16 16 O -0.31 -5.62 10.80 -93.45 -1.01 -6.63 16 17 C 0.15 5.61 3.44 46.18 0.16 5.77 16 18 H 0.12 3.67 7.97 -2.39 -0.02 3.65 16 19 C -0.14 -6.15 6.40 31.99 0.20 -5.94 16 20 C 0.16 8.77 5.89 86.85 0.51 9.28 16 21 N -0.62 -35.39 3.39 -692.00 -2.35 -37.74 16 22 C -0.24 -14.58 10.27 84.03 0.86 -13.72 16 23 H 0.07 4.41 7.83 -2.91 -0.02 4.38 16 24 C -0.07 -4.26 5.49 84.86 0.47 -3.79 16 25 N -0.95 -60.34 10.09 21.65 0.22 -60.12 16 26 Si 0.98 48.80 29.55 68.60 2.03 50.82 16 27 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 28 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 29 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 30 C 0.13 6.17 6.52 86.73 0.57 6.74 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.88 6.34 -2.39 -0.02 0.86 16 33 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.09 1.45 8.11 -2.38 -0.02 1.43 16 35 H 0.10 1.60 5.09 -2.39 -0.01 1.58 16 36 H 0.17 2.62 3.68 -2.91 -0.01 2.61 16 37 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 38 H 0.11 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.11 1.32 7.92 -2.39 -0.02 1.31 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.05 0.65 8.08 -2.39 -0.02 0.63 16 44 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.06 3.08 5.61 -2.39 -0.01 3.07 16 46 H 0.06 4.04 5.87 -2.39 -0.01 4.02 16 47 H 0.00 -0.14 8.14 -2.38 -0.02 -0.15 16 48 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 49 H 0.01 0.48 6.45 -2.39 -0.02 0.47 16 50 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -83.02 386.64 3.78 -79.24 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.95 Total: 13.97 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 6.02 Total: 6.96 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -4.15 Total: -117.59 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.06 Total: -33.41 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.82 kcal Total: -83.02 3.78 -79.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033991007.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.693 kcal (2) G-P(sol) polarization free energy of solvation -83.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds