Wall clock time and date at job start Wed Apr 1 2020 02:42:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46501 * 109.47001 * 2 1
4 4 C 1.34779 * 119.99996 * 277.54426 * 3 2 1
5 5 O 1.21580 * 119.99644 * 44.70394 * 4 3 2
6 6 C 1.47604 * 120.00008 * 224.70532 * 4 3 2
7 7 C 1.39752 * 120.26093 * 324.62866 * 6 4 3
8 8 C 1.37476 * 120.19484 * 179.53022 * 7 6 4
9 9 C 1.39587 * 120.42678 * 0.55958 * 8 7 6
10 10 C 1.39182 * 119.11314 * 0.09700 * 9 8 7
11 11 C 1.37309 * 120.92693 * 359.42331 * 10 9 8
12 12 C 1.51666 * 107.00454 * 179.01304 * 10 9 8
13 13 C 1.54696 * 101.92341 * 344.84406 * 12 10 9
14 14 H 1.08997 * 110.74864 * 143.62181 * 13 12 10
15 15 C 1.52999 * 110.90281 * 266.89158 * 13 12 10
16 16 O 1.36007 * 129.73085 * 180.67131 * 9 8 7
17 17 C 1.46500 * 119.99988 * 97.54690 * 3 2 1
18 18 H 1.08996 * 110.64123 * 335.52500 * 17 3 2
19 19 C 1.55154 * 110.72258 * 98.67070 * 17 3 2
20 20 C 1.55394 * 101.36707 * 153.94533 * 19 17 3
21 21 N 1.47425 * 104.87063 * 323.01763 * 20 19 17
22 22 C 1.36938 * 125.64402 * 204.16687 * 21 20 19
23 23 H 1.08002 * 120.00001 * 179.97438 * 22 21 20
24 24 C 1.38807 * 120.00214 * 359.96115 * 22 21 20
25 25 N 1.31618 * 120.00306 * 359.97438 * 24 22 21
26 26 Si 1.86805 * 120.00042 * 180.02562 * 24 22 21
27 27 H 1.48495 * 109.47288 * 89.99775 * 26 24 22
28 28 H 1.48505 * 109.47106 * 209.99962 * 26 24 22
29 29 H 1.48498 * 109.47093 * 329.99592 * 26 24 22
30 30 C 1.47021 * 108.70566 * 24.13233 * 21 20 19
31 31 H 1.09005 * 109.47505 * 300.00134 * 1 2 3
32 32 H 1.09005 * 109.46975 * 60.00017 * 1 2 3
33 33 H 1.09001 * 109.47360 * 180.02562 * 1 2 3
34 34 H 1.08997 * 109.47378 * 239.99549 * 2 1 3
35 35 H 1.08998 * 109.46791 * 119.99641 * 2 1 3
36 36 H 1.07999 * 119.90801 * 359.80865 * 7 6 4
37 37 H 1.08000 * 119.79109 * 180.28091 * 8 7 6
38 38 H 1.08006 * 120.07074 * 180.36598 * 11 10 9
39 39 H 1.09001 * 110.94657 * 103.00471 * 12 10 9
40 40 H 1.09007 * 110.94134 * 226.68687 * 12 10 9
41 41 H 1.08998 * 109.47587 * 174.92754 * 15 13 12
42 42 H 1.08999 * 109.47428 * 294.93027 * 15 13 12
43 43 H 1.09007 * 109.47298 * 54.92644 * 15 13 12
44 44 H 1.08994 * 111.00753 * 272.11940 * 19 17 3
45 45 H 1.09008 * 111.00381 * 35.96687 * 19 17 3
46 46 H 1.09002 * 110.34016 * 204.16937 * 20 19 17
47 47 H 1.08991 * 110.43907 * 81.91686 * 20 19 17
48 48 H 0.96995 * 120.00654 * 180.02562 * 25 24 22
49 49 H 1.09004 * 109.88161 * 239.51896 * 30 21 20
50 50 H 1.09001 * 109.88128 * 118.36021 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.0984 2.0677 -1.1571
5 8 1.1799 2.0273 -1.9527
6 6 3.3012 2.8684 -1.4585
7 6 3.9788 3.5345 -0.4336
8 6 5.1045 4.2720 -0.7144
9 6 5.5751 4.3727 -2.0247
10 6 4.8882 3.7182 -3.0431
11 6 3.7685 2.9711 -2.7722
12 6 5.6132 4.0295 -4.3383
13 6 6.5052 5.2242 -3.9262
14 1 7.4703 5.1778 -4.4307
15 6 5.8066 6.5536 -4.2187
16 8 6.6612 5.0318 -2.5101
17 6 2.4195 2.0163 1.2577
18 1 1.9193 1.5442 2.1032
19 6 3.9603 1.9637 1.4322
20 6 4.2068 3.1931 2.3501
21 7 3.2454 4.2101 1.8865
22 6 3.3768 5.5638 2.0461
23 1 2.6139 6.2286 1.6686
24 6 4.4903 6.0816 2.6932
25 7 5.4197 5.2715 3.1540
26 14 4.6691 7.9282 2.9115
27 1 4.0418 8.3382 4.1935
28 1 6.1099 8.2875 2.9282
29 1 3.9978 8.6270 1.7862
30 6 2.1228 3.5304 1.2238
31 1 -0.3634 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 -0.3634 -1.0277 0.0005
34 1 1.8933 -0.5139 -0.8899
35 1 1.8932 -0.5138 0.8900
36 1 3.6197 3.4661 0.5826
37 1 5.6257 4.7804 0.0833
38 1 3.2495 2.4642 -3.5723
39 1 6.2200 3.1825 -4.6585
40 1 4.9096 4.3196 -5.1187
41 1 6.4141 7.3748 -3.8385
42 1 5.6759 6.6663 -5.2950
43 1 4.8317 6.5668 -3.7311
44 1 4.2668 1.0391 1.9213
45 1 4.4664 2.0833 0.4741
46 1 5.2282 3.5551 2.2325
47 1 4.0138 2.9355 3.3914
48 1 6.1976 5.6332 3.6066
49 1 2.0418 3.8693 0.1910
50 1 1.1959 3.7386 1.7582
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001033991008.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:42:38
Heat of formation + Delta-G solvation = 90.842041 kcal
Electronic energy + Delta-G solvation = -32701.109150 eV
Core-core repulsion = 28698.938966 eV
Total energy + Delta-G solvation = -4002.170184 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.54124 -40.47571 -38.25580 -36.50421 -35.05573 -32.89186 -32.67675 -30.90158
-30.27460 -29.67339 -29.08679 -27.20978 -26.64712 -24.75349 -23.91521 -22.30714
-21.81059 -21.29564 -20.94969 -20.36432 -18.43185 -17.59592 -17.17355 -16.57723
-16.31946 -15.91406 -15.55858 -14.98408 -14.73953 -14.59602 -14.02178 -13.72147
-13.70532 -13.55546 -13.33937 -13.12548 -13.03258 -12.47266 -12.40256 -12.31650
-12.16251 -12.13004 -11.98813 -11.87148 -11.69264 -11.35106 -11.20414 -11.06751
-11.01371 -10.97476 -10.82086 -10.51441 -10.28275 -10.17580 -10.11239 -9.86119
-9.51505 -9.41293 -8.81867 -8.18428 -8.13976 -7.60278 -7.04586 -5.87091
-3.33569 1.43216 1.94588 2.88159 3.26878 3.32186 3.39223 3.40599
3.57025 4.26824 4.32881 4.56955 4.70869 4.92258 4.94344 5.06976
5.16177 5.19180 5.25782 5.28502 5.31660 5.40853 5.46817 5.49027
5.52860 5.56968 5.59321 5.71814 5.79330 5.83073 5.96623 6.01717
6.07501 6.10462 6.14933 6.19786 6.30088 6.39335 6.43177 6.46032
6.54761 6.58015 6.78973 6.90642 7.05987 7.15989 7.24523 7.41351
7.48577 7.62206 7.70518 7.72050 8.07005 8.36524 8.96146 9.54381
10.09953 11.15044
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.007202 B = 0.006683 C = 0.003858
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3886.809145 B = 4188.637365 C = 7255.374767
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.129 3.871
3 N -0.644 5.644
4 C 0.600 3.400
5 O -0.522 6.522
6 C -0.207 4.207
7 C -0.098 4.098
8 C -0.134 4.134
9 C 0.124 3.876
10 C -0.213 4.213
11 C -0.023 4.023
12 C -0.098 4.098
13 C 0.075 3.925
14 H 0.110 0.890
15 C -0.171 4.171
16 O -0.300 6.300
17 C 0.135 3.865
18 H 0.097 0.903
19 C -0.192 4.192
20 C 0.136 3.864
21 N -0.577 5.577
22 C -0.240 4.240
23 H 0.082 0.918
24 C 0.006 3.994
25 N -0.913 5.913
26 Si 0.914 3.086
27 H -0.287 1.287
28 H -0.287 1.287
29 H -0.279 1.279
30 C 0.097 3.903
31 H 0.055 0.945
32 H 0.068 0.932
33 H 0.056 0.944
34 H 0.065 0.935
35 H 0.077 0.923
36 H 0.251 0.749
37 H 0.140 0.860
38 H 0.118 0.882
39 H 0.083 0.917
40 H 0.085 0.915
41 H 0.067 0.933
42 H 0.071 0.929
43 H 0.065 0.935
44 H 0.067 0.933
45 H 0.096 0.904
46 H 0.121 0.879
47 H 0.026 0.974
48 H 0.258 0.742
49 H 0.049 0.951
50 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.483 -7.396 -9.397 11.968
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.007 3.993
3 N -0.380 5.380
4 C 0.392 3.608
5 O -0.398 6.398
6 C -0.211 4.211
7 C -0.115 4.115
8 C -0.153 4.153
9 C 0.078 3.922
10 C -0.214 4.214
11 C -0.042 4.042
12 C -0.135 4.135
13 C 0.019 3.981
14 H 0.128 0.872
15 C -0.229 4.229
16 O -0.214 6.214
17 C 0.031 3.969
18 H 0.115 0.885
19 C -0.231 4.231
20 C 0.012 3.988
21 N -0.303 5.303
22 C -0.368 4.368
23 H 0.100 0.900
24 C -0.191 4.191
25 N -0.560 5.560
26 Si 0.743 3.257
27 H -0.214 1.214
28 H -0.213 1.213
29 H -0.204 1.204
30 C -0.028 4.028
31 H 0.074 0.926
32 H 0.087 0.913
33 H 0.075 0.925
34 H 0.083 0.917
35 H 0.096 0.904
36 H 0.262 0.738
37 H 0.158 0.842
38 H 0.136 0.864
39 H 0.101 0.899
40 H 0.104 0.896
41 H 0.086 0.914
42 H 0.090 0.910
43 H 0.084 0.916
44 H 0.085 0.915
45 H 0.114 0.886
46 H 0.138 0.862
47 H 0.044 0.956
48 H 0.068 0.932
49 H 0.066 0.934
50 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -0.649 -7.161 -9.611 12.003
hybrid contribution 0.071 0.942 -0.095 0.949
sum -0.579 -6.219 -9.705 11.541
Atomic orbital electron populations
1.22278 0.96372 1.01327 1.03210 1.21275 0.94272 0.81708 1.02074
1.47381 1.70234 1.14098 1.06267 1.18150 0.85125 0.77299 0.80254
1.90668 1.37682 1.60917 1.50528 1.20097 0.99836 1.06759 0.94391
1.26129 0.90707 0.87284 1.07350 1.20573 0.98363 1.03398 0.92956
1.20186 0.86162 0.90977 0.94838 1.20383 1.00301 1.05638 0.95069
1.20082 0.93358 0.95647 0.95146 1.21724 0.97912 0.97843 0.96011
1.23355 0.99793 0.94959 0.79993 0.87250 1.22235 1.01841 0.96761
1.02014 1.86863 1.37799 1.73566 1.23188 1.22218 0.95922 0.93485
0.85237 0.88505 1.24384 0.95156 1.00681 1.02862 1.22376 0.98554
0.84345 0.93512 1.44898 1.18668 1.03108 1.63622 1.19045 1.05031
0.79858 1.32832 0.89971 1.24785 0.96649 0.98326 0.99339 1.69742
1.11143 1.32570 1.42506 0.86088 0.77260 0.84207 0.78097 1.21351
1.21334 1.20393 1.22080 0.92331 0.90139 0.98241 0.92607 0.91280
0.92525 0.91668 0.90419 0.73750 0.84208 0.86438 0.89881 0.89647
0.91388 0.91047 0.91617 0.91489 0.88583 0.86168 0.95574 0.93171
0.93376 0.94457
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.11 10.09 37.16 0.37 -1.74 16
2 C 0.13 1.64 6.26 -4.04 -0.03 1.62 16
3 N -0.64 -10.32 2.54 -165.22 -0.42 -10.74 16
4 C 0.60 11.14 5.43 -12.44 -0.07 11.07 16
5 O -0.52 -10.61 16.11 5.30 0.09 -10.52 16
6 C -0.21 -3.95 5.19 -104.92 -0.54 -4.49 16
7 C -0.10 -1.97 3.77 -39.29 -0.15 -2.11 16
8 C -0.13 -2.82 10.05 -39.36 -0.40 -3.21 16
9 C 0.12 2.36 6.95 -38.73 -0.27 2.09 16
10 C -0.21 -3.61 6.25 -104.13 -0.65 -4.26 16
11 C -0.02 -0.41 9.60 -39.33 -0.38 -0.79 16
12 C -0.10 -1.25 6.66 -26.51 -0.18 -1.43 16
13 C 0.08 0.98 4.30 -25.84 -0.11 0.87 16
14 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16
15 C -0.17 -2.04 9.50 37.16 0.35 -1.69 16
16 O -0.30 -5.32 10.81 -19.76 -0.21 -5.53 16
17 C 0.14 2.25 3.31 -66.10 -0.22 2.03 16
18 H 0.10 1.42 8.07 -51.93 -0.42 1.00 16
19 C -0.19 -3.32 6.02 -24.32 -0.15 -3.47 16
20 C 0.14 2.89 5.27 -2.27 -0.01 2.88 16
21 N -0.58 -13.05 2.00 -203.81 -0.41 -13.46 16
22 C -0.24 -6.07 10.22 -15.06 -0.15 -6.22 16
23 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16
24 C 0.01 0.15 5.49 -17.43 -0.10 0.06 16
25 N -0.91 -23.85 10.09 55.49 0.56 -23.29 16
26 Si 0.91 20.87 29.55 -169.99 -5.02 15.84 16
27 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16
28 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
30 C 0.10 1.93 5.75 -3.06 -0.02 1.91 16
31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.07 1.01 6.98 -51.93 -0.36 0.64 16
33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
34 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16
35 H 0.08 0.81 8.02 -51.93 -0.42 0.40 16
36 H 0.25 5.04 0.00 0.00 0.00 5.04 16
37 H 0.14 3.26 8.06 -52.49 -0.42 2.83 16
38 H 0.12 1.91 8.01 -52.48 -0.42 1.49 16
39 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16
40 H 0.09 0.95 7.93 -51.92 -0.41 0.53 16
41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
43 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16
44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
45 H 0.10 1.79 4.44 -54.16 -0.24 1.55 16
46 H 0.12 2.88 5.87 -51.93 -0.31 2.57 16
47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16
48 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16
49 H 0.05 1.04 4.54 -51.93 -0.24 0.80 16
50 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16
LS Contribution 380.09 15.07 5.73 5.73
Total: -1.00 -28.48 380.09 -9.80 -38.29
By element:
Atomic # 1 Polarization: 18.01 SS G_CDS: -7.43 Total: 10.58 kcal
Atomic # 6 Polarization: -4.22 SS G_CDS: -2.68 Total: -6.90 kcal
Atomic # 7 Polarization: -47.22 SS G_CDS: -0.27 Total: -47.48 kcal
Atomic # 8 Polarization: -15.93 SS G_CDS: -0.13 Total: -16.06 kcal
Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -28.48 -9.80 -38.29 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033991008.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.128 kcal
(2) G-P(sol) polarization free energy of solvation -28.485 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.644 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal
(6) G-S(sol) free energy of system = (1) + (5) 90.842 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds