Wall clock time and date at job start Wed Apr 1 2020 02:42:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46501 * 109.47001 * 2 1
4 4 C 1.34779 * 119.99996 * 277.54426 * 3 2 1
5 5 O 1.21580 * 119.99644 * 44.70394 * 4 3 2
6 6 C 1.47604 * 120.00008 * 224.70532 * 4 3 2
7 7 C 1.39752 * 120.26093 * 324.62866 * 6 4 3
8 8 C 1.37476 * 120.19484 * 179.53022 * 7 6 4
9 9 C 1.39587 * 120.42678 * 0.55958 * 8 7 6
10 10 C 1.39182 * 119.11314 * 0.09700 * 9 8 7
11 11 C 1.37309 * 120.92693 * 359.42331 * 10 9 8
12 12 C 1.51666 * 107.00454 * 179.01304 * 10 9 8
13 13 C 1.54696 * 101.92341 * 344.84406 * 12 10 9
14 14 H 1.08997 * 110.74864 * 143.62181 * 13 12 10
15 15 C 1.52999 * 110.90281 * 266.89158 * 13 12 10
16 16 O 1.36007 * 129.73085 * 180.67131 * 9 8 7
17 17 C 1.46500 * 119.99988 * 97.54690 * 3 2 1
18 18 H 1.08996 * 110.64123 * 335.52500 * 17 3 2
19 19 C 1.55154 * 110.72258 * 98.67070 * 17 3 2
20 20 C 1.55394 * 101.36707 * 153.94533 * 19 17 3
21 21 N 1.47425 * 104.87063 * 323.01763 * 20 19 17
22 22 C 1.36938 * 125.64402 * 204.16687 * 21 20 19
23 23 H 1.08002 * 120.00001 * 179.97438 * 22 21 20
24 24 C 1.38807 * 120.00214 * 359.96115 * 22 21 20
25 25 N 1.31618 * 120.00306 * 359.97438 * 24 22 21
26 26 Si 1.86805 * 120.00042 * 180.02562 * 24 22 21
27 27 H 1.48495 * 109.47288 * 89.99775 * 26 24 22
28 28 H 1.48505 * 109.47106 * 209.99962 * 26 24 22
29 29 H 1.48498 * 109.47093 * 329.99592 * 26 24 22
30 30 C 1.47021 * 108.70566 * 24.13233 * 21 20 19
31 31 H 1.09005 * 109.47505 * 300.00134 * 1 2 3
32 32 H 1.09005 * 109.46975 * 60.00017 * 1 2 3
33 33 H 1.09001 * 109.47360 * 180.02562 * 1 2 3
34 34 H 1.08997 * 109.47378 * 239.99549 * 2 1 3
35 35 H 1.08998 * 109.46791 * 119.99641 * 2 1 3
36 36 H 1.07999 * 119.90801 * 359.80865 * 7 6 4
37 37 H 1.08000 * 119.79109 * 180.28091 * 8 7 6
38 38 H 1.08006 * 120.07074 * 180.36598 * 11 10 9
39 39 H 1.09001 * 110.94657 * 103.00471 * 12 10 9
40 40 H 1.09007 * 110.94134 * 226.68687 * 12 10 9
41 41 H 1.08998 * 109.47587 * 174.92754 * 15 13 12
42 42 H 1.08999 * 109.47428 * 294.93027 * 15 13 12
43 43 H 1.09007 * 109.47298 * 54.92644 * 15 13 12
44 44 H 1.08994 * 111.00753 * 272.11940 * 19 17 3
45 45 H 1.09008 * 111.00381 * 35.96687 * 19 17 3
46 46 H 1.09002 * 110.34016 * 204.16937 * 20 19 17
47 47 H 1.08991 * 110.43907 * 81.91686 * 20 19 17
48 48 H 0.96995 * 120.00654 * 180.02562 * 25 24 22
49 49 H 1.09004 * 109.88161 * 239.51896 * 30 21 20
50 50 H 1.09001 * 109.88128 * 118.36021 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.0984 2.0677 -1.1571
5 8 1.1799 2.0273 -1.9527
6 6 3.3012 2.8684 -1.4585
7 6 3.9788 3.5345 -0.4336
8 6 5.1045 4.2720 -0.7144
9 6 5.5751 4.3727 -2.0247
10 6 4.8882 3.7182 -3.0431
11 6 3.7685 2.9711 -2.7722
12 6 5.6132 4.0295 -4.3383
13 6 6.5052 5.2242 -3.9262
14 1 7.4703 5.1778 -4.4307
15 6 5.8066 6.5536 -4.2187
16 8 6.6612 5.0318 -2.5101
17 6 2.4195 2.0163 1.2577
18 1 1.9193 1.5442 2.1032
19 6 3.9603 1.9637 1.4322
20 6 4.2068 3.1931 2.3501
21 7 3.2454 4.2101 1.8865
22 6 3.3768 5.5638 2.0461
23 1 2.6139 6.2286 1.6686
24 6 4.4903 6.0816 2.6932
25 7 5.4197 5.2715 3.1540
26 14 4.6691 7.9282 2.9115
27 1 4.0418 8.3382 4.1935
28 1 6.1099 8.2875 2.9282
29 1 3.9978 8.6270 1.7862
30 6 2.1228 3.5304 1.2238
31 1 -0.3634 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 -0.3634 -1.0277 0.0005
34 1 1.8933 -0.5139 -0.8899
35 1 1.8932 -0.5138 0.8900
36 1 3.6197 3.4661 0.5826
37 1 5.6257 4.7804 0.0833
38 1 3.2495 2.4642 -3.5723
39 1 6.2200 3.1825 -4.6585
40 1 4.9096 4.3196 -5.1187
41 1 6.4141 7.3748 -3.8385
42 1 5.6759 6.6663 -5.2950
43 1 4.8317 6.5668 -3.7311
44 1 4.2668 1.0391 1.9213
45 1 4.4664 2.0833 0.4741
46 1 5.2282 3.5551 2.2325
47 1 4.0138 2.9355 3.3914
48 1 6.1976 5.6332 3.6066
49 1 2.0418 3.8693 0.1910
50 1 1.1959 3.7386 1.7582
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001033991008.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:42:37
Heat of formation + Delta-G solvation = 76.456244 kcal
Electronic energy + Delta-G solvation = -32701.732965 eV
Core-core repulsion = 28698.938966 eV
Total energy + Delta-G solvation = -4002.793999 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-42.99294 -41.79350 -39.77176 -37.87519 -36.49302 -34.44513 -34.01980 -32.30187
-31.52012 -31.25418 -30.53592 -28.77363 -27.79656 -26.53152 -25.21715 -23.49686
-23.19277 -22.48902 -22.43400 -22.04849 -19.80663 -19.28168 -18.68584 -17.85198
-17.75379 -17.17331 -16.87648 -16.81026 -16.13882 -16.07637 -15.37968 -15.25315
-15.00547 -14.91976 -14.61944 -14.49961 -14.36708 -13.98277 -13.70788 -13.63523
-13.49023 -13.32208 -13.17348 -13.09153 -13.01491 -12.86799 -12.82618 -12.66244
-12.38515 -12.19307 -12.08793 -12.05688 -11.91792 -11.84951 -11.64292 -11.43925
-11.01055 -10.89355 -10.70103 -9.65153 -9.50862 -9.01088 -8.86073 -7.82975
-5.29668 -0.03321 0.50146 1.44503 1.45541 1.47554 1.54204 1.97821
2.33114 2.44408 2.83115 3.27492 3.40551 3.48306 3.55253 3.64678
3.74736 3.87813 3.94365 3.97050 4.11034 4.24187 4.26210 4.31231
4.42286 4.52161 4.53876 4.58298 4.61423 4.64929 4.71895 4.80475
4.83482 4.86103 4.89261 4.95768 5.03857 5.06262 5.11757 5.17441
5.20709 5.40371 5.42514 5.43847 5.46116 5.53918 5.63224 5.74083
5.85340 6.00048 6.21777 6.26503 6.35219 6.97055 7.02294 7.63159
8.20277 9.16152
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.007202 B = 0.006683 C = 0.003858
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3886.809145 B = 4188.637365 C = 7255.374767
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.121 3.879
3 N -0.638 5.638
4 C 0.600 3.400
5 O -0.544 6.544
6 C -0.220 4.220
7 C -0.104 4.104
8 C -0.162 4.162
9 C 0.115 3.885
10 C -0.208 4.208
11 C -0.025 4.025
12 C -0.091 4.091
13 C 0.066 3.934
14 H 0.145 0.855
15 C -0.169 4.169
16 O -0.323 6.323
17 C 0.150 3.850
18 H 0.129 0.871
19 C -0.176 4.176
20 C 0.141 3.859
21 N -0.589 5.589
22 C -0.247 4.247
23 H 0.074 0.926
24 C -0.036 4.036
25 N -0.929 5.929
26 Si 0.963 3.037
27 H -0.283 1.283
28 H -0.292 1.292
29 H -0.278 1.278
30 C 0.095 3.905
31 H 0.054 0.946
32 H 0.040 0.960
33 H 0.084 0.916
34 H 0.071 0.929
35 H 0.110 0.890
36 H 0.248 0.752
37 H 0.102 0.898
38 H 0.136 0.864
39 H 0.107 0.893
40 H 0.110 0.890
41 H 0.065 0.935
42 H 0.107 0.893
43 H 0.037 0.963
44 H 0.100 0.900
45 H 0.084 0.916
46 H 0.089 0.911
47 H 0.015 0.985
48 H 0.252 0.748
49 H 0.030 0.970
50 H 0.039 0.961
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.834 -9.131 -11.186 14.464
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.000 4.000
3 N -0.373 5.373
4 C 0.392 3.608
5 O -0.422 6.422
6 C -0.224 4.224
7 C -0.121 4.121
8 C -0.181 4.181
9 C 0.070 3.930
10 C -0.208 4.208
11 C -0.044 4.044
12 C -0.127 4.127
13 C 0.011 3.989
14 H 0.163 0.837
15 C -0.227 4.227
16 O -0.238 6.238
17 C 0.046 3.954
18 H 0.147 0.853
19 C -0.215 4.215
20 C 0.018 3.982
21 N -0.316 5.316
22 C -0.375 4.375
23 H 0.092 0.908
24 C -0.230 4.230
25 N -0.576 5.576
26 Si 0.792 3.208
27 H -0.209 1.209
28 H -0.218 1.218
29 H -0.204 1.204
30 C -0.029 4.029
31 H 0.073 0.927
32 H 0.059 0.941
33 H 0.103 0.897
34 H 0.089 0.911
35 H 0.128 0.872
36 H 0.260 0.740
37 H 0.120 0.880
38 H 0.154 0.846
39 H 0.125 0.875
40 H 0.128 0.872
41 H 0.084 0.916
42 H 0.125 0.875
43 H 0.056 0.944
44 H 0.119 0.881
45 H 0.102 0.898
46 H 0.107 0.893
47 H 0.033 0.967
48 H 0.062 0.938
49 H 0.048 0.952
50 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -1.015 -8.923 -11.402 14.514
hybrid contribution 0.214 1.512 0.374 1.572
sum -0.801 -7.411 -11.027 13.310
Atomic orbital electron populations
1.22206 0.95905 1.02736 1.01726 1.21624 0.94665 0.79699 1.03989
1.47417 1.69640 1.15153 1.05061 1.18128 0.84642 0.77203 0.80811
1.90659 1.38166 1.61837 1.51497 1.20275 1.00209 1.07070 0.94862
1.25912 0.90738 0.87845 1.07601 1.20334 0.99455 1.04994 0.93290
1.20229 0.86814 0.91401 0.94603 1.20819 0.99480 1.03914 0.96631
1.20337 0.93509 0.95503 0.95057 1.21872 0.98066 0.98498 0.94307
1.23828 1.01948 0.95497 0.77615 0.83720 1.22263 1.00058 0.96293
1.04041 1.86841 1.37427 1.73362 1.26123 1.22140 0.95440 0.91390
0.86469 0.85320 1.24192 0.95751 1.00005 1.01526 1.22136 0.96730
0.85573 0.93793 1.44942 1.20045 1.02659 1.63907 1.19164 1.04729
0.81428 1.32215 0.90808 1.25349 0.96670 1.01191 0.99822 1.69936
1.11219 1.33369 1.43124 0.85326 0.76671 0.80921 0.77921 1.20917
1.21819 1.20376 1.22148 0.91515 0.92478 0.96773 0.92690 0.94091
0.89685 0.91080 0.87188 0.74019 0.88005 0.84630 0.87475 0.87156
0.91606 0.87465 0.94400 0.88145 0.89819 0.89311 0.96653 0.93820
0.95191 0.94268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.63 10.09 71.98 0.73 -2.90 16
2 C 0.12 2.69 6.26 86.38 0.54 3.23 16
3 N -0.64 -19.27 2.54 -794.91 -2.02 -21.29 16
4 C 0.60 21.85 5.43 86.72 0.47 22.32 16
5 O -0.54 -21.74 16.11 -3.97 -0.06 -21.80 16
6 C -0.22 -8.43 5.19 -20.06 -0.10 -8.53 16
7 C -0.10 -4.33 3.77 22.46 0.08 -4.25 16
8 C -0.16 -7.20 10.05 22.42 0.23 -6.98 16
9 C 0.12 4.49 6.95 22.82 0.16 4.65 16
10 C -0.21 -6.82 6.25 -19.55 -0.12 -6.95 16
11 C -0.03 -0.87 9.60 22.43 0.22 -0.65 16
12 C -0.09 -2.04 6.66 30.73 0.20 -1.84 16
13 C 0.07 1.56 4.30 31.17 0.13 1.70 16
14 H 0.15 2.41 8.14 -2.39 -0.02 2.39 16
15 C -0.17 -3.73 9.50 71.98 0.68 -3.05 16
16 O -0.32 -11.47 10.81 -93.63 -1.01 -12.48 16
17 C 0.15 4.74 3.31 46.18 0.15 4.89 16
18 H 0.13 3.34 8.07 -2.39 -0.02 3.32 16
19 C -0.18 -5.96 6.02 32.16 0.19 -5.76 16
20 C 0.14 6.19 5.27 87.03 0.46 6.65 16
21 N -0.59 -27.60 2.00 -798.73 -1.60 -29.20 16
22 C -0.25 -13.02 10.22 84.03 0.86 -12.16 16
23 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16
24 C -0.04 -1.89 5.49 84.86 0.47 -1.42 16
25 N -0.93 -50.80 10.09 21.65 0.22 -50.58 16
26 Si 0.96 44.35 29.55 68.60 2.03 46.38 16
27 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
28 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16
29 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16
30 C 0.10 3.83 5.75 86.73 0.50 4.33 16
31 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16
32 H 0.04 1.12 6.98 -2.38 -0.02 1.11 16
33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
34 H 0.07 1.53 8.09 -2.39 -0.02 1.51 16
35 H 0.11 1.78 8.02 -2.39 -0.02 1.76 16
36 H 0.25 10.26 0.00 0.00 0.00 10.26 16
37 H 0.10 5.22 8.06 -2.91 -0.02 5.20 16
38 H 0.14 4.14 8.01 -2.91 -0.02 4.12 16
39 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16
40 H 0.11 1.98 7.93 -2.38 -0.02 1.96 16
41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
42 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16
43 H 0.04 1.03 8.12 -2.38 -0.02 1.02 16
44 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16
45 H 0.08 3.13 4.44 -4.48 -0.02 3.11 16
46 H 0.09 4.49 5.87 -2.39 -0.01 4.48 16
47 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16
48 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16
49 H 0.03 1.34 4.54 -2.38 -0.01 1.33 16
50 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16
Total: -1.00 -66.29 380.09 4.35 -61.94
By element:
Atomic # 1 Polarization: 32.82 SS G_CDS: 0.95 Total: 33.77 kcal
Atomic # 6 Polarization: -12.57 SS G_CDS: 5.85 Total: -6.72 kcal
Atomic # 7 Polarization: -97.67 SS G_CDS: -3.40 Total: -101.07 kcal
Atomic # 8 Polarization: -33.21 SS G_CDS: -1.08 Total: -34.29 kcal
Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal
Total: -66.29 4.35 -61.94 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033991008.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 138.398 kcal
(2) G-P(sol) polarization free energy of solvation -66.287 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.111 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.942 kcal
(6) G-S(sol) free energy of system = (1) + (5) 76.456 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds