Wall clock time and date at job start Wed Apr 1 2020 02:42:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46504 * 109.47542 * 2 1
4 4 C 1.34777 * 119.99796 * 275.00647 * 3 2 1
5 5 O 1.21587 * 119.99893 * 4.89901 * 4 3 2
6 6 C 1.47595 * 119.99772 * 184.91013 * 4 3 2
7 7 C 1.39753 * 120.26902 * 354.88850 * 6 4 3
8 8 C 1.37466 * 120.20440 * 179.87447 * 7 6 4
9 9 C 1.39592 * 120.43166 * 0.09469 * 8 7 6
10 10 C 1.39184 * 119.10341 * 0.14323 * 9 8 7
11 11 C 1.37310 * 120.92975 * 359.36849 * 10 9 8
12 12 C 1.51672 * 106.99867 * 179.44465 * 10 9 8
13 13 C 1.54699 * 101.89144 * 344.47541 * 12 10 9
14 14 H 1.09007 * 110.74047 * 267.04456 * 13 12 10
15 15 C 1.53002 * 110.74399 * 143.71155 * 13 12 10
16 16 O 1.35997 * 129.71757 * 180.57424 * 9 8 7
17 17 C 1.46494 * 119.99672 * 94.99915 * 3 2 1
18 18 H 1.08994 * 110.89315 * 358.76399 * 17 3 2
19 19 C 1.55160 * 111.00220 * 234.88330 * 17 3 2
20 20 C 1.54327 * 102.94396 * 206.39230 * 19 17 3
21 21 N 1.47022 * 107.26890 * 22.19041 * 20 19 17
22 22 C 1.36936 * 125.64708 * 181.02462 * 21 20 19
23 23 H 1.07998 * 120.00364 * 180.02562 * 22 21 20
24 24 C 1.38813 * 119.99850 * 0.30223 * 22 21 20
25 25 N 1.31622 * 120.00245 * 359.72578 * 24 22 21
26 26 Si 1.86798 * 120.00078 * 179.72135 * 24 22 21
27 27 H 1.48504 * 109.47015 * 0.02562 * 26 24 22
28 28 H 1.48507 * 109.47053 * 119.99853 * 26 24 22
29 29 H 1.48502 * 109.47772 * 240.00209 * 26 24 22
30 30 C 1.47418 * 108.70461 * 1.29051 * 21 20 19
31 31 H 1.09002 * 109.46937 * 299.99551 * 1 2 3
32 32 H 1.08997 * 109.47248 * 60.00099 * 1 2 3
33 33 H 1.09000 * 109.47206 * 180.02562 * 1 2 3
34 34 H 1.08998 * 109.46896 * 239.99929 * 2 1 3
35 35 H 1.09005 * 109.46985 * 120.00011 * 2 1 3
36 36 H 1.07998 * 119.90032 * 359.85955 * 7 6 4
37 37 H 1.08007 * 119.78509 * 180.02562 * 8 7 6
38 38 H 1.08007 * 120.07000 * 180.59089 * 11 10 9
39 39 H 1.09002 * 110.94368 * 226.32600 * 12 10 9
40 40 H 1.08997 * 110.97807 * 102.63728 * 12 10 9
41 41 H 1.08995 * 109.46735 * 305.14615 * 15 13 12
42 42 H 1.09002 * 109.46714 * 65.14095 * 15 13 12
43 43 H 1.08994 * 109.46998 * 185.14031 * 15 13 12
44 44 H 1.08992 * 110.72161 * 88.02357 * 19 17 3
45 45 H 1.08997 * 110.72134 * 324.75020 * 19 17 3
46 46 H 1.09000 * 109.87741 * 262.77785 * 20 19 17
47 47 H 1.08998 * 110.01453 * 141.68560 * 20 19 17
48 48 H 0.96999 * 120.00282 * 180.02562 * 25 24 22
49 49 H 1.09000 * 110.36997 * 94.48101 * 30 21 20
50 50 H 1.09005 * 110.36913 * 216.80351 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1470 2.0505 -1.1628
5 8 1.7745 1.5408 -2.2019
6 6 2.7403 3.4019 -1.1746
7 6 3.0724 4.0360 0.0256
8 6 3.6273 5.2936 0.0129
9 6 3.8628 5.9503 -1.1961
10 6 3.5254 5.3158 -2.3881
11 6 2.9798 4.0557 -2.3870
12 6 3.8808 6.2684 -3.5136
13 6 4.0585 7.6052 -2.7556
14 1 3.1269 8.1711 -2.7473
15 6 5.1903 8.4307 -3.3708
16 8 4.4050 7.1757 -1.4283
17 6 2.3668 2.0348 1.2639
18 1 2.1865 1.3696 2.1082
19 6 1.5926 3.3690 1.4319
20 6 2.5181 4.1921 2.3526
21 7 3.8722 3.6347 2.2214
22 6 4.9837 4.0721 2.8910
23 1 5.9377 3.5942 2.7241
24 6 4.8830 5.1261 3.7888
25 7 3.7204 5.7085 3.9923
26 14 6.3976 5.7177 4.7082
27 1 7.5718 4.9035 4.3036
28 1 6.6491 7.1445 4.3815
29 1 6.1764 5.5761 6.1698
30 6 3.8365 2.5310 1.2447
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3633 -1.0277 0.0005
34 1 1.8932 -0.5138 -0.8900
35 1 1.8933 -0.5139 0.8900
36 1 2.8923 3.5366 0.9661
37 1 3.8817 5.7772 0.9446
38 1 2.7320 3.5725 -3.3206
39 1 3.0690 6.3360 -4.2378
40 1 4.8097 5.9694 -3.9992
41 1 6.1018 7.8338 -3.3983
42 1 4.9169 8.7233 -4.3847
43 1 5.3582 9.3231 -2.7680
44 1 0.6277 3.1975 1.9088
45 1 1.4657 3.8650 0.4697
46 1 2.1817 4.1093 3.3860
47 1 2.5162 5.2378 2.0449
48 1 3.6501 6.4452 4.6194
49 1 4.1039 2.8938 0.2523
50 1 4.5105 1.7310 1.5514
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001033991010.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:42:44
Heat of formation + Delta-G solvation = 220.751817 kcal
Electronic energy + Delta-G solvation = -32777.836293 eV
Core-core repulsion = 28781.299420 eV
Total energy + Delta-G solvation = -3996.536873 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-43.60765 -40.53443 -38.72674 -36.41544 -34.99995 -33.01524 -32.86353 -31.07705
-30.36804 -29.62176 -29.23393 -27.45560 -26.50906 -24.74333 -23.97814 -22.17584
-21.97819 -21.46670 -20.70972 -20.38262 -18.50869 -17.97817 -17.23642 -16.74076
-16.20408 -16.03149 -15.13380 -14.97392 -14.72774 -14.53251 -14.34886 -13.98614
-13.78510 -13.65645 -13.39979 -13.15633 -12.91652 -12.84635 -12.55543 -12.42940
-12.22790 -12.12373 -12.00720 -11.86878 -11.61547 -11.23679 -11.14775 -11.11758
-11.02888 -10.96764 -10.69277 -10.38216 -10.20896 -10.15844 -10.08173 -9.91950
-9.50562 -8.83960 -8.67054 -8.47656 -7.99391 -7.55866 -7.02885 -5.90257
-3.27608 1.37794 1.95908 3.13170 3.20791 3.33048 3.40262 3.41534
3.53127 4.26484 4.33014 4.60669 4.63945 4.82368 4.89632 4.93906
4.99701 5.03479 5.18962 5.23276 5.30768 5.37094 5.38828 5.41613
5.45612 5.48232 5.59452 5.64776 5.71558 5.73673 5.83327 5.85789
5.96500 5.97694 6.02605 6.07858 6.19267 6.26406 6.29642 6.41281
6.47506 6.55374 6.66272 6.85088 6.92410 7.08205 7.20831 7.25835
7.31658 7.59856 7.64783 7.69431 7.96864 8.50214 8.96843 9.55746
10.12109 11.20524
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.007075 B = 0.006582 C = 0.003658
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3956.431215 B = 4253.048594 C = 7652.700362
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.115 3.885
3 N -0.602 5.602
4 C 0.577 3.423
5 O -0.553 6.553
6 C -0.239 4.239
7 C -0.078 4.078
8 C -0.163 4.163
9 C 0.144 3.856
10 C -0.236 4.236
11 C -0.002 4.002
12 C -0.095 4.095
13 C 0.073 3.927
14 H 0.083 0.917
15 C -0.148 4.148
16 O -0.299 6.299
17 C 0.111 3.889
18 H 0.111 0.889
19 C -0.187 4.187
20 C 0.152 3.848
21 N -0.598 5.598
22 C -0.237 4.237
23 H 0.083 0.917
24 C 0.002 3.998
25 N -0.917 5.917
26 Si 0.913 3.087
27 H -0.279 1.279
28 H -0.288 1.288
29 H -0.289 1.289
30 C 0.085 3.915
31 H 0.056 0.944
32 H 0.061 0.939
33 H 0.061 0.939
34 H 0.078 0.922
35 H 0.078 0.922
36 H 0.268 0.732
37 H 0.154 0.846
38 H 0.123 0.877
39 H 0.083 0.917
40 H 0.083 0.917
41 H 0.066 0.934
42 H 0.075 0.925
43 H 0.067 0.933
44 H 0.069 0.931
45 H 0.095 0.905
46 H 0.063 0.937
47 H 0.071 0.929
48 H 0.256 0.744
49 H 0.069 0.931
50 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.816 -2.746 -9.856 10.920
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.007 4.007
3 N -0.334 5.334
4 C 0.369 3.631
5 O -0.433 6.433
6 C -0.243 4.243
7 C -0.093 4.093
8 C -0.182 4.182
9 C 0.098 3.902
10 C -0.237 4.237
11 C -0.021 4.021
12 C -0.132 4.132
13 C 0.017 3.983
14 H 0.101 0.899
15 C -0.205 4.205
16 O -0.213 6.213
17 C 0.006 3.994
18 H 0.129 0.871
19 C -0.225 4.225
20 C 0.029 3.971
21 N -0.327 5.327
22 C -0.364 4.364
23 H 0.101 0.899
24 C -0.195 4.195
25 N -0.564 5.564
26 Si 0.743 3.257
27 H -0.204 1.204
28 H -0.215 1.215
29 H -0.216 1.216
30 C -0.039 4.039
31 H 0.075 0.925
32 H 0.080 0.920
33 H 0.080 0.920
34 H 0.097 0.903
35 H 0.096 0.904
36 H 0.281 0.719
37 H 0.172 0.828
38 H 0.141 0.859
39 H 0.101 0.899
40 H 0.101 0.899
41 H 0.085 0.915
42 H 0.094 0.906
43 H 0.086 0.914
44 H 0.087 0.913
45 H 0.112 0.888
46 H 0.081 0.919
47 H 0.089 0.911
48 H 0.067 0.933
49 H 0.085 0.915
50 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -3.811 -2.715 -10.079 11.112
hybrid contribution 0.803 0.459 0.286 0.968
sum -3.008 -2.256 -9.793 10.490
Atomic orbital electron populations
1.22137 0.96053 1.01791 1.02613 1.21412 0.94444 0.82080 1.02800
1.47785 1.65595 1.13890 1.06091 1.18101 0.77189 0.85164 0.82641
1.90685 1.50903 1.69773 1.31964 1.19745 1.13550 0.96489 0.94498
1.26615 0.85442 0.93371 1.03901 1.20657 1.05324 0.96184 0.95985
1.20171 0.90654 0.84487 0.94880 1.20385 1.11519 0.97486 0.94268
1.20086 0.93201 0.91533 0.97309 1.21702 1.02373 0.92422 0.96732
1.23348 0.98663 0.95569 0.80696 0.89894 1.21862 0.97905 1.00267
1.00462 1.86838 1.69201 1.31854 1.33414 1.22986 0.95503 0.94809
0.86142 0.87092 1.24221 0.99552 0.96267 1.02502 1.21641 0.81857
0.96454 0.97142 1.45108 1.05933 1.34878 1.46742 1.19079 0.86858
1.13008 1.17488 0.89891 1.24789 0.97206 0.98194 0.99298 1.69909
1.22150 1.25744 1.38566 0.86037 0.81772 0.78554 0.79340 1.20389
1.21508 1.21616 1.22737 0.93738 0.91599 0.95820 0.92459 0.92038
0.91961 0.90337 0.90408 0.71947 0.82829 0.85932 0.89872 0.89901
0.91518 0.90630 0.91359 0.91285 0.88751 0.91883 0.91090 0.93339
0.91466 0.92821
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.94 10.20 37.15 0.38 -1.56 16
2 C 0.12 1.46 6.04 -4.04 -0.02 1.44 16
3 N -0.60 -9.41 2.57 -199.84 -0.51 -9.92 16
4 C 0.58 10.51 7.07 -12.44 -0.09 10.42 16
5 O -0.55 -11.03 16.05 5.29 0.08 -10.94 16
6 C -0.24 -4.47 4.55 -104.93 -0.48 -4.95 16
7 C -0.08 -1.51 1.73 -39.89 -0.07 -1.58 16
8 C -0.16 -3.42 8.47 -39.36 -0.33 -3.75 16
9 C 0.14 2.80 7.04 -38.73 -0.27 2.53 16
10 C -0.24 -4.07 6.26 -104.13 -0.65 -4.72 16
11 C 0.00 -0.04 9.58 -39.33 -0.38 -0.41 16
12 C -0.10 -1.26 6.65 -26.51 -0.18 -1.44 16
13 C 0.07 0.98 4.26 -25.84 -0.11 0.87 16
14 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16
15 C -0.15 -1.53 9.60 37.16 0.36 -1.17 16
16 O -0.30 -5.49 10.80 -19.73 -0.21 -5.70 16
17 C 0.11 1.79 3.56 -65.66 -0.23 1.55 16
18 H 0.11 1.60 7.83 -51.93 -0.41 1.19 16
19 C -0.19 -3.22 5.79 -24.89 -0.14 -3.36 16
20 C 0.15 3.22 4.03 -3.06 -0.01 3.21 16
21 N -0.60 -13.27 2.02 -291.10 -0.59 -13.86 16
22 C -0.24 -5.93 10.02 -15.06 -0.15 -6.08 16
23 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16
24 C 0.00 0.06 5.49 -17.43 -0.10 -0.04 16
25 N -0.92 -24.28 10.31 55.49 0.57 -23.71 16
26 Si 0.91 20.87 29.55 -169.99 -5.02 15.85 16
27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
29 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
30 C 0.09 1.62 5.88 -3.00 -0.02 1.60 16
31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
32 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16
33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
34 H 0.08 1.03 7.65 -51.93 -0.40 0.64 16
35 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16
36 H 0.27 5.03 0.00 0.00 0.00 5.03 16
37 H 0.15 3.69 6.19 -52.48 -0.33 3.37 16
38 H 0.12 2.06 7.67 -52.48 -0.40 1.66 16
39 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16
40 H 0.08 1.01 7.90 -51.93 -0.41 0.60 16
41 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16
42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
45 H 0.09 1.72 4.25 -80.72 -0.34 1.38 16
46 H 0.06 1.46 7.37 -51.93 -0.38 1.08 16
47 H 0.07 1.66 5.26 -51.93 -0.27 1.38 16
48 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16
49 H 0.07 1.39 3.81 -110.01 -0.42 0.97 16
50 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
LS Contribution 372.13 15.07 5.61 5.61
Total: -1.00 -29.00 372.13 -10.11 -39.11
By element:
Atomic # 1 Polarization: 18.57 SS G_CDS: -7.54 Total: 11.03 kcal
Atomic # 6 Polarization: -4.96 SS G_CDS: -2.50 Total: -7.46 kcal
Atomic # 7 Polarization: -46.96 SS G_CDS: -0.53 Total: -47.50 kcal
Atomic # 8 Polarization: -16.52 SS G_CDS: -0.13 Total: -16.65 kcal
Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -29.00 -10.11 -39.11 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033991010.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 259.866 kcal
(2) G-P(sol) polarization free energy of solvation -29.004 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 230.862 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal
(6) G-S(sol) free energy of system = (1) + (5) 220.752 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds