Wall clock time and date at job start Wed Apr 1 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47459 * 2 1 4 4 C 1.34779 * 120.00211 * 86.17097 * 3 2 1 5 5 O 1.21288 * 119.99836 * 4.23779 * 4 3 2 6 6 C 1.50698 * 120.00415 * 184.24371 * 4 3 2 7 7 H 1.08996 * 109.67392 * 309.20017 * 6 4 3 8 8 C 1.53406 * 109.68156 * 69.74826 * 6 4 3 9 9 C 1.53071 * 108.29088 * 184.44971 * 8 6 4 10 10 C 1.50767 * 109.66543 * 311.75703 * 9 8 6 11 11 C 1.38508 * 118.75578 * 197.71470 * 10 9 8 12 12 C 1.38103 * 120.31648 * 180.20158 * 11 10 9 13 13 C 1.38290 * 119.98074 * 0.03281 * 12 11 10 14 14 C 1.37973 * 119.96110 * 359.93729 * 13 12 11 15 15 C 1.38366 * 121.40902 * 17.81395 * 10 9 8 16 16 O 1.35838 * 121.80998 * 359.62159 * 15 10 9 17 17 C 1.46500 * 120.00339 * 266.17216 * 3 2 1 18 18 H 1.08999 * 110.64412 * 182.38447 * 17 3 2 19 19 C 1.55156 * 110.71779 * 59.04696 * 17 3 2 20 20 C 1.54905 * 101.58721 * 277.14217 * 19 17 3 21 21 N 1.47432 * 104.83017 * 322.99206 * 20 19 17 22 22 C 1.36929 * 125.64778 * 204.16178 * 21 20 19 23 23 H 1.08007 * 120.00579 * 328.13361 * 22 21 20 24 24 C 1.38816 * 120.00009 * 148.13298 * 22 21 20 25 25 N 1.31617 * 120.00250 * 161.18270 * 24 22 21 26 26 Si 1.86794 * 119.99973 * 341.17949 * 24 22 21 27 27 H 1.48499 * 109.47048 * 86.80184 * 26 24 22 28 28 H 1.48497 * 109.47185 * 206.80546 * 26 24 22 29 29 H 1.48500 * 109.47310 * 326.80730 * 26 24 22 30 30 C 1.47016 * 108.70242 * 24.12718 * 21 20 19 31 31 H 1.08996 * 109.47360 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47154 * 300.00104 * 1 2 3 33 33 H 1.08998 * 109.46989 * 59.99955 * 1 2 3 34 34 H 1.09003 * 109.47265 * 120.00442 * 2 1 3 35 35 H 1.09003 * 109.47154 * 239.99896 * 2 1 3 36 36 H 1.09001 * 109.70304 * 304.15420 * 8 6 4 37 37 H 1.09003 * 109.69906 * 64.75165 * 8 6 4 38 38 H 1.08999 * 109.43256 * 191.70379 * 9 8 6 39 39 H 1.09001 * 109.41157 * 71.80293 * 9 8 6 40 40 H 1.07996 * 119.83898 * 0.23097 * 11 10 9 41 41 H 1.07997 * 120.00931 * 180.02562 * 12 11 10 42 42 H 1.07994 * 120.02017 * 179.91731 * 13 12 11 43 43 H 1.07992 * 119.89043 * 180.02562 * 14 13 12 44 44 H 1.09008 * 111.00587 * 35.21949 * 19 17 3 45 45 H 1.08999 * 111.00649 * 159.06477 * 19 17 3 46 46 H 1.08995 * 110.37320 * 204.15333 * 20 19 17 47 47 H 1.09004 * 110.45990 * 81.87233 * 20 19 17 48 48 H 0.96994 * 120.00495 * 179.97438 * 25 24 22 49 49 H 1.08999 * 109.88537 * 239.52295 * 30 21 20 50 50 H 1.09002 * 109.88666 * 118.36029 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1696 2.0425 1.1646 5 8 1.9752 1.4707 2.2164 6 6 2.5800 3.4925 1.1600 7 1 3.4629 3.6220 0.5341 8 6 1.4312 4.3529 0.6184 9 6 1.9191 5.8006 0.5225 10 6 2.5930 6.1954 1.8121 11 6 2.7738 7.5413 2.0846 12 6 3.3910 7.9390 3.2544 13 6 3.8323 6.9912 4.1596 14 6 3.6544 5.6491 3.8938 15 6 3.0310 5.2449 2.7172 16 8 2.8694 3.9149 2.4933 17 6 2.3425 2.0436 -1.2659 18 1 2.7295 3.0466 -1.0866 19 6 1.1011 2.0880 -2.1956 20 6 1.1468 0.6815 -2.8431 21 7 2.5813 0.4021 -3.0376 22 6 3.1081 -0.4620 -3.9600 23 1 2.5569 -1.3445 -4.2498 24 6 4.3506 -0.2039 -4.5226 25 7 5.0232 -1.1733 -5.1059 26 14 5.0680 1.5194 -4.4519 27 1 5.8095 1.6949 -3.1774 28 1 5.9948 1.7170 -5.5952 29 1 3.9698 2.5162 -4.5269 30 6 3.3524 1.2054 -2.0777 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.1398 3.9971 -0.3698 37 1 0.5790 4.2965 1.2957 38 1 1.0692 6.4585 0.3412 39 1 2.6289 5.8899 -0.2999 40 1 2.4301 8.2833 1.3792 41 1 3.5290 8.9897 3.4620 42 1 4.3162 7.3014 5.0739 43 1 3.9991 4.9100 4.6017 44 1 0.1858 2.2233 -1.6192 45 1 1.2052 2.8686 -2.9493 46 1 0.6283 0.6881 -3.8018 47 1 0.7029 -0.0589 -2.1776 48 1 5.8912 -0.9928 -5.4993 49 1 4.0368 1.8648 -2.6116 50 1 3.9114 0.5497 -1.4101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033991314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:20 Heat of formation + Delta-G solvation = -2.081291 kcal Electronic energy + Delta-G solvation = -31762.283443 eV Core-core repulsion = 27756.083801 eV Total energy + Delta-G solvation = -4006.199642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.29965 -40.02813 -38.16637 -37.32736 -34.87993 -34.46389 -32.33874 -31.95953 -30.48802 -30.39620 -29.68526 -27.80322 -26.56847 -24.58111 -24.04317 -22.99642 -22.69842 -21.61853 -20.60061 -20.32195 -18.92430 -18.26296 -17.48956 -17.05339 -16.87797 -15.95560 -15.61778 -15.47005 -15.35190 -15.01657 -14.55071 -14.42316 -14.13779 -14.05260 -13.62205 -13.46015 -13.36663 -13.24125 -13.09653 -12.76209 -12.71901 -12.31298 -12.07365 -11.89322 -11.84741 -11.75434 -11.49522 -11.37834 -11.28236 -11.24233 -10.95273 -10.81681 -10.69136 -10.57052 -10.45039 -10.19913 -9.63325 -9.57936 -9.03412 -8.68608 -8.52572 -8.36416 -6.99936 -6.07260 -3.48143 1.07021 1.19929 2.44230 2.56103 3.23358 3.35236 3.36228 3.41817 3.55073 4.19352 4.25468 4.42912 4.45017 4.51018 4.62979 4.74766 4.82958 4.86654 4.90659 5.00265 5.10375 5.15216 5.18834 5.25994 5.29074 5.32061 5.37613 5.49395 5.51872 5.59972 5.61952 5.68620 5.74358 5.80295 5.81345 5.95218 6.05255 6.08623 6.11373 6.21443 6.28379 6.28956 6.33253 6.38908 6.52641 6.54634 6.66922 6.69516 7.22008 7.45557 7.73635 8.15616 8.23565 8.73751 9.56570 10.09203 11.09013 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.003429 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.239585 B = 8164.670949 C = 9149.182683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.586 5.586 4 C 0.524 3.476 5 O -0.521 6.521 6 C 0.074 3.926 7 H 0.097 0.903 8 C -0.153 4.153 9 C -0.077 4.077 10 C -0.163 4.163 11 C -0.084 4.084 12 C -0.155 4.155 13 C -0.088 4.088 14 C -0.146 4.146 15 C 0.136 3.864 16 O -0.288 6.288 17 C 0.113 3.887 18 H 0.094 0.906 19 C -0.149 4.149 20 C 0.116 3.884 21 N -0.605 5.605 22 C -0.248 4.248 23 H 0.088 0.912 24 C 0.032 3.968 25 N -0.903 5.903 26 Si 0.887 3.113 27 H -0.285 1.285 28 H -0.301 1.301 29 H -0.274 1.274 30 C 0.110 3.890 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.045 0.955 48 H 0.265 0.735 49 H 0.035 0.965 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.395 16.935 13.246 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.320 5.320 4 C 0.310 3.690 5 O -0.396 6.396 6 C 0.014 3.986 7 H 0.115 0.885 8 C -0.190 4.190 9 C -0.114 4.114 10 C -0.163 4.163 11 C -0.102 4.102 12 C -0.173 4.173 13 C -0.106 4.106 14 C -0.165 4.165 15 C 0.090 3.910 16 O -0.201 6.201 17 C 0.009 3.991 18 H 0.112 0.888 19 C -0.188 4.188 20 C -0.009 4.009 21 N -0.333 5.333 22 C -0.376 4.376 23 H 0.105 0.895 24 C -0.168 4.168 25 N -0.545 5.545 26 Si 0.718 3.282 27 H -0.213 1.213 28 H -0.229 1.229 29 H -0.200 1.200 30 C -0.015 4.015 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.052 0.948 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.305 16.309 13.778 22.565 hybrid contribution 0.650 1.160 -0.335 1.371 sum -6.655 17.468 13.443 23.025 Atomic orbital electron populations 1.22306 0.96029 1.02327 1.02121 1.21698 0.94223 0.81322 1.04611 1.47860 1.64717 1.14451 1.04927 1.19805 0.78049 0.87121 0.84070 1.90713 1.49898 1.68493 1.30531 1.22298 0.99548 0.93234 0.83519 0.88539 1.22307 0.97859 0.95035 1.03840 1.20506 1.00456 0.95766 0.94633 1.19857 1.04577 0.93712 0.98202 1.20889 0.97976 0.94304 0.97043 1.21014 1.01709 0.99566 0.95046 1.20928 0.98590 0.91894 0.99232 1.20630 1.02138 0.96589 0.97132 1.18781 0.95183 0.82228 0.94777 1.86063 1.85614 1.20212 1.28233 1.22398 0.97055 0.96088 0.83547 0.88794 1.23241 0.96758 1.00359 0.98473 1.22114 0.87719 0.92508 0.98517 1.44673 1.00313 1.50340 1.37930 1.18555 1.02796 1.00496 1.15741 0.89472 1.25330 0.97426 0.97071 0.97021 1.69797 1.13430 1.30984 1.40287 0.86825 0.78293 0.86943 0.76138 1.21276 1.22927 1.19951 1.22003 0.93603 0.94228 0.91663 0.91652 0.92942 0.91432 0.90526 0.87412 0.88400 0.89662 0.89360 0.89919 0.85790 0.85921 0.85423 0.85079 0.90726 0.90148 0.93137 0.93774 0.92506 0.94765 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.19 37.16 0.34 -1.85 16 2 C 0.10 1.57 5.08 -4.05 -0.02 1.55 16 3 N -0.59 -8.82 2.44 -164.03 -0.40 -9.22 16 4 C 0.52 8.29 7.02 -10.99 -0.08 8.21 16 5 O -0.52 -9.98 16.15 -14.10 -0.23 -10.21 16 6 C 0.07 0.99 2.33 -27.67 -0.06 0.92 16 7 H 0.10 1.20 7.05 -51.93 -0.37 0.84 16 8 C -0.15 -1.60 5.10 -26.48 -0.13 -1.73 16 9 C -0.08 -0.69 5.86 -27.81 -0.16 -0.85 16 10 C -0.16 -1.76 5.75 -104.44 -0.60 -2.36 16 11 C -0.08 -0.77 9.67 -39.53 -0.38 -1.15 16 12 C -0.16 -1.34 10.04 -39.61 -0.40 -1.74 16 13 C -0.09 -0.81 10.04 -39.66 -0.40 -1.21 16 14 C -0.15 -1.67 9.94 -39.34 -0.39 -2.06 16 15 C 0.14 1.75 6.47 -39.20 -0.25 1.49 16 16 O -0.29 -4.32 9.48 -38.88 -0.37 -4.69 16 17 C 0.11 1.69 2.55 -66.09 -0.17 1.52 16 18 H 0.09 1.19 4.95 -51.93 -0.26 0.93 16 19 C -0.15 -2.05 5.44 -24.59 -0.13 -2.18 16 20 C 0.12 2.00 6.05 -2.53 -0.02 1.99 16 21 N -0.60 -13.22 2.52 -170.07 -0.43 -13.65 16 22 C -0.25 -6.62 10.52 -15.06 -0.16 -6.78 16 23 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 24 C 0.03 0.89 5.45 -17.43 -0.09 0.80 16 25 N -0.90 -26.91 13.97 55.49 0.78 -26.13 16 26 Si 0.89 21.53 24.64 -169.99 -4.19 17.34 16 27 H -0.29 -6.76 6.84 56.52 0.39 -6.37 16 28 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 29 H -0.27 -6.36 7.08 56.52 0.40 -5.96 16 30 C 0.11 2.19 4.89 -3.06 -0.01 2.17 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.83 4.67 -51.93 -0.24 0.58 16 34 H 0.08 1.23 7.48 -51.93 -0.39 0.85 16 35 H 0.11 1.85 5.10 -51.93 -0.26 1.58 16 36 H 0.10 0.92 5.67 -51.93 -0.29 0.62 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.07 0.86 6.84 -51.92 -0.36 0.51 16 45 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.04 0.72 4.04 -51.93 -0.21 0.51 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.04 0.74 3.34 -51.93 -0.17 0.56 16 50 H 0.05 1.02 7.93 -51.93 -0.41 0.60 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -32.36 374.26 -9.51 -41.88 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.19 Total: 2.31 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.13 Total: -3.27 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.05 Total: -49.00 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.60 Total: -14.90 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.19 Total: 17.34 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.36 -9.51 -41.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033991314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.796 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds