Wall clock time and date at job start Wed Apr 1 2020 02:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47459 * 2 1 4 4 C 1.34779 * 120.00211 * 86.17097 * 3 2 1 5 5 O 1.21288 * 119.99836 * 4.23779 * 4 3 2 6 6 C 1.50698 * 120.00415 * 184.24371 * 4 3 2 7 7 H 1.08996 * 109.67392 * 309.20017 * 6 4 3 8 8 C 1.53406 * 109.68156 * 69.74826 * 6 4 3 9 9 C 1.53071 * 108.29088 * 184.44971 * 8 6 4 10 10 C 1.50767 * 109.66543 * 311.75703 * 9 8 6 11 11 C 1.38508 * 118.75578 * 197.71470 * 10 9 8 12 12 C 1.38103 * 120.31648 * 180.20158 * 11 10 9 13 13 C 1.38290 * 119.98074 * 0.03281 * 12 11 10 14 14 C 1.37973 * 119.96110 * 359.93729 * 13 12 11 15 15 C 1.38366 * 121.40902 * 17.81395 * 10 9 8 16 16 O 1.35838 * 121.80998 * 359.62159 * 15 10 9 17 17 C 1.46500 * 120.00339 * 266.17216 * 3 2 1 18 18 H 1.08999 * 110.64412 * 182.38447 * 17 3 2 19 19 C 1.55156 * 110.71779 * 59.04696 * 17 3 2 20 20 C 1.54905 * 101.58721 * 277.14217 * 19 17 3 21 21 N 1.47432 * 104.83017 * 322.99206 * 20 19 17 22 22 C 1.36929 * 125.64778 * 204.16178 * 21 20 19 23 23 H 1.08007 * 120.00579 * 328.13361 * 22 21 20 24 24 C 1.38816 * 120.00009 * 148.13298 * 22 21 20 25 25 N 1.31617 * 120.00250 * 161.18270 * 24 22 21 26 26 Si 1.86794 * 119.99973 * 341.17949 * 24 22 21 27 27 H 1.48499 * 109.47048 * 86.80184 * 26 24 22 28 28 H 1.48497 * 109.47185 * 206.80546 * 26 24 22 29 29 H 1.48500 * 109.47310 * 326.80730 * 26 24 22 30 30 C 1.47016 * 108.70242 * 24.12718 * 21 20 19 31 31 H 1.08996 * 109.47360 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47154 * 300.00104 * 1 2 3 33 33 H 1.08998 * 109.46989 * 59.99955 * 1 2 3 34 34 H 1.09003 * 109.47265 * 120.00442 * 2 1 3 35 35 H 1.09003 * 109.47154 * 239.99896 * 2 1 3 36 36 H 1.09001 * 109.70304 * 304.15420 * 8 6 4 37 37 H 1.09003 * 109.69906 * 64.75165 * 8 6 4 38 38 H 1.08999 * 109.43256 * 191.70379 * 9 8 6 39 39 H 1.09001 * 109.41157 * 71.80293 * 9 8 6 40 40 H 1.07996 * 119.83898 * 0.23097 * 11 10 9 41 41 H 1.07997 * 120.00931 * 180.02562 * 12 11 10 42 42 H 1.07994 * 120.02017 * 179.91731 * 13 12 11 43 43 H 1.07992 * 119.89043 * 180.02562 * 14 13 12 44 44 H 1.09008 * 111.00587 * 35.21949 * 19 17 3 45 45 H 1.08999 * 111.00649 * 159.06477 * 19 17 3 46 46 H 1.08995 * 110.37320 * 204.15333 * 20 19 17 47 47 H 1.09004 * 110.45990 * 81.87233 * 20 19 17 48 48 H 0.96994 * 120.00495 * 179.97438 * 25 24 22 49 49 H 1.08999 * 109.88537 * 239.52295 * 30 21 20 50 50 H 1.09002 * 109.88666 * 118.36029 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1696 2.0425 1.1646 5 8 1.9752 1.4707 2.2164 6 6 2.5800 3.4925 1.1600 7 1 3.4629 3.6220 0.5341 8 6 1.4312 4.3529 0.6184 9 6 1.9191 5.8006 0.5225 10 6 2.5930 6.1954 1.8121 11 6 2.7738 7.5413 2.0846 12 6 3.3910 7.9390 3.2544 13 6 3.8323 6.9912 4.1596 14 6 3.6544 5.6491 3.8938 15 6 3.0310 5.2449 2.7172 16 8 2.8694 3.9149 2.4933 17 6 2.3425 2.0436 -1.2659 18 1 2.7295 3.0466 -1.0866 19 6 1.1011 2.0880 -2.1956 20 6 1.1468 0.6815 -2.8431 21 7 2.5813 0.4021 -3.0376 22 6 3.1081 -0.4620 -3.9600 23 1 2.5569 -1.3445 -4.2498 24 6 4.3506 -0.2039 -4.5226 25 7 5.0232 -1.1733 -5.1059 26 14 5.0680 1.5194 -4.4519 27 1 5.8095 1.6949 -3.1774 28 1 5.9948 1.7170 -5.5952 29 1 3.9698 2.5162 -4.5269 30 6 3.3524 1.2054 -2.0777 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.1398 3.9971 -0.3698 37 1 0.5790 4.2965 1.2957 38 1 1.0692 6.4585 0.3412 39 1 2.6289 5.8899 -0.2999 40 1 2.4301 8.2833 1.3792 41 1 3.5290 8.9897 3.4620 42 1 4.3162 7.3014 5.0739 43 1 3.9991 4.9100 4.6017 44 1 0.1858 2.2233 -1.6192 45 1 1.2052 2.8686 -2.9493 46 1 0.6283 0.6881 -3.8018 47 1 0.7029 -0.0589 -2.1776 48 1 5.8912 -0.9928 -5.4993 49 1 4.0368 1.8648 -2.6116 50 1 3.9114 0.5497 -1.4101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033991314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:19 Heat of formation + Delta-G solvation = -20.624594 kcal Electronic energy + Delta-G solvation = -31763.087541 eV Core-core repulsion = 27756.083801 eV Total energy + Delta-G solvation = -4007.003740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.30165 -41.11595 -39.43416 -38.28222 -36.25643 -35.39557 -34.18594 -33.06441 -31.50357 -31.22703 -31.13890 -29.19609 -27.47457 -26.34167 -24.84396 -24.14872 -23.43382 -22.97311 -22.04602 -21.29893 -20.05691 -19.24909 -18.96540 -18.53230 -17.87658 -17.32925 -16.88403 -16.72029 -16.34203 -16.05093 -15.47921 -15.37385 -15.19992 -15.13214 -15.08778 -14.94386 -14.55269 -14.31818 -14.17371 -14.10082 -13.61200 -13.50083 -13.39509 -13.17501 -13.06240 -12.85060 -12.73339 -12.45420 -12.41933 -12.28960 -12.22435 -12.11581 -12.01421 -11.92865 -11.73217 -11.46884 -11.43645 -10.80935 -10.70367 -9.84233 -9.73299 -9.15543 -8.85271 -8.20420 -5.56884 0.36613 0.44825 1.28481 1.29948 1.38289 1.43474 1.50647 2.36491 2.41491 2.79426 3.02380 3.14771 3.36457 3.43009 3.63644 3.65555 3.71140 3.77968 3.80754 4.01231 4.08681 4.18354 4.23402 4.30840 4.35569 4.37289 4.47323 4.51266 4.56787 4.59803 4.61699 4.71651 4.76752 4.85633 4.88056 4.92952 4.94940 5.00312 5.05723 5.10854 5.14119 5.22036 5.33913 5.42400 5.43843 5.51805 5.59737 5.80657 5.85658 6.13792 6.20095 6.41907 6.78827 6.93430 7.51978 8.13287 9.00144 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.003429 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.239585 B = 8164.670949 C = 9149.182683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.104 3.896 3 N -0.582 5.582 4 C 0.523 3.477 5 O -0.563 6.563 6 C 0.072 3.928 7 H 0.106 0.894 8 C -0.145 4.145 9 C -0.074 4.074 10 C -0.170 4.170 11 C -0.086 4.086 12 C -0.153 4.153 13 C -0.091 4.091 14 C -0.169 4.169 15 C 0.101 3.899 16 O -0.320 6.320 17 C 0.124 3.876 18 H 0.128 0.872 19 C -0.133 4.133 20 C 0.108 3.892 21 N -0.619 5.619 22 C -0.236 4.236 23 H 0.051 0.949 24 C -0.031 4.031 25 N -0.956 5.956 26 Si 0.949 3.051 27 H -0.279 1.279 28 H -0.311 1.311 29 H -0.247 1.247 30 C 0.105 3.895 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.123 0.877 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.048 0.952 47 H 0.053 0.947 48 H 0.262 0.738 49 H 0.029 0.971 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.989 21.590 13.509 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.018 4.018 3 N -0.315 5.315 4 C 0.311 3.689 5 O -0.441 6.441 6 C 0.013 3.987 7 H 0.123 0.877 8 C -0.183 4.183 9 C -0.111 4.111 10 C -0.171 4.171 11 C -0.104 4.104 12 C -0.171 4.171 13 C -0.109 4.109 14 C -0.188 4.188 15 C 0.056 3.944 16 O -0.234 6.234 17 C 0.020 3.980 18 H 0.146 0.854 19 C -0.171 4.171 20 C -0.015 4.015 21 N -0.347 5.347 22 C -0.365 4.365 23 H 0.069 0.931 24 C -0.227 4.227 25 N -0.602 5.602 26 Si 0.779 3.221 27 H -0.206 1.206 28 H -0.240 1.240 29 H -0.171 1.171 30 C -0.020 4.020 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.132 0.868 39 H 0.116 0.884 40 H 0.171 0.829 41 H 0.169 0.831 42 H 0.168 0.832 43 H 0.141 0.859 44 H 0.126 0.874 45 H 0.119 0.881 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.046 0.954 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.945 21.001 14.055 26.807 hybrid contribution 1.123 -0.388 -0.295 1.224 sum -7.823 20.614 13.760 25.989 Atomic orbital electron populations 1.22209 0.93722 1.03214 1.02522 1.21608 0.96038 0.81531 1.02659 1.47873 1.64288 1.14216 1.05110 1.20334 0.77015 0.88241 0.83357 1.90690 1.51760 1.69682 1.31949 1.22355 1.01075 0.91630 0.83649 0.87673 1.22310 0.96251 0.95591 1.04099 1.20607 1.01565 0.94864 0.94039 1.20151 1.04321 0.94037 0.98561 1.21275 0.97334 0.94138 0.97667 1.21435 1.00307 1.00848 0.94480 1.21241 0.98276 0.91012 1.00346 1.20823 1.03052 0.97708 0.97175 1.19115 0.97268 0.81768 0.96210 1.86009 1.86437 1.21897 1.29047 1.22418 0.96515 0.96274 0.82805 0.85443 1.23232 0.97354 0.98103 0.98456 1.22306 0.84728 0.95388 0.99107 1.44707 1.02682 1.49903 1.37359 1.18436 1.02247 1.00146 1.15628 0.93139 1.26001 0.98255 1.00736 0.97669 1.69949 1.14118 1.33161 1.42929 0.85812 0.77998 0.82575 0.75758 1.20614 1.24012 1.17134 1.22054 0.94644 0.93965 0.91331 0.90705 0.93144 0.90121 0.92232 0.89570 0.86677 0.90458 0.86812 0.88402 0.82938 0.83098 0.83193 0.85940 0.87396 0.88138 0.93331 0.92918 0.92873 0.95363 0.95938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 9.19 71.98 0.66 -3.17 16 2 C 0.10 3.14 5.08 86.38 0.44 3.58 16 3 N -0.58 -16.69 2.44 -791.24 -1.93 -18.62 16 4 C 0.52 16.12 7.02 87.66 0.62 16.74 16 5 O -0.56 -21.94 16.15 15.73 0.25 -21.68 16 6 C 0.07 1.81 2.33 29.98 0.07 1.88 16 7 H 0.11 2.38 7.05 -2.39 -0.02 2.36 16 8 C -0.14 -2.51 5.10 30.75 0.16 -2.35 16 9 C -0.07 -1.00 5.86 29.89 0.18 -0.83 16 10 C -0.17 -3.18 5.75 -19.75 -0.11 -3.29 16 11 C -0.09 -1.24 9.67 22.30 0.22 -1.03 16 12 C -0.15 -2.10 10.04 22.25 0.22 -1.88 16 13 C -0.09 -1.49 10.04 22.22 0.22 -1.26 16 14 C -0.17 -3.80 9.94 22.43 0.22 -3.58 16 15 C 0.10 2.50 6.47 22.52 0.15 2.65 16 16 O -0.32 -9.57 9.48 -72.95 -0.69 -10.26 16 17 C 0.12 3.30 2.55 46.18 0.12 3.41 16 18 H 0.13 2.63 4.95 -2.39 -0.01 2.62 16 19 C -0.13 -3.04 5.44 31.98 0.17 -2.87 16 20 C 0.11 3.50 6.05 86.85 0.53 4.02 16 21 N -0.62 -26.68 2.52 -691.98 -1.75 -28.43 16 22 C -0.24 -12.86 10.52 84.04 0.88 -11.98 16 23 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 24 C -0.03 -1.76 5.45 84.86 0.46 -1.30 16 25 N -0.96 -59.28 13.97 21.65 0.30 -58.98 16 26 Si 0.95 44.42 24.64 68.60 1.69 46.11 16 27 H -0.28 -12.61 6.84 99.48 0.68 -11.93 16 28 H -0.31 -14.96 7.11 99.48 0.71 -14.26 16 29 H -0.25 -10.39 7.08 99.48 0.70 -9.68 16 30 C 0.11 4.03 4.89 86.73 0.42 4.45 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.72 4.67 -2.39 -0.01 1.70 16 34 H 0.06 1.99 7.48 -2.39 -0.02 1.97 16 35 H 0.09 3.00 5.10 -2.39 -0.01 2.99 16 36 H 0.12 1.54 5.67 -2.39 -0.01 1.53 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 41 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 43 H 0.12 2.77 8.06 -2.91 -0.02 2.75 16 44 H 0.11 1.86 6.84 -2.38 -0.02 1.85 16 45 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.05 1.63 4.04 -2.38 -0.01 1.62 16 48 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 49 H 0.03 1.15 3.34 -2.39 -0.01 1.14 16 50 H 0.02 0.97 7.93 -2.39 -0.02 0.95 16 Total: -1.00 -75.72 374.26 4.43 -71.29 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.93 Total: 17.36 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.62 Total: 3.20 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -3.38 Total: -106.03 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.44 Total: -31.94 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.69 Total: 46.11 kcal Total: -75.72 4.43 -71.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033991314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.667 kcal (2) G-P(sol) polarization free energy of solvation -75.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds