Wall clock time and date at job start Wed Apr 1 2020 02:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47462 * 2 1 4 4 C 1.34770 * 119.99796 * 84.23677 * 3 2 1 5 5 O 1.21289 * 119.99652 * 184.43716 * 4 3 2 6 6 C 1.50698 * 120.00350 * 4.43845 * 4 3 2 7 7 H 1.09004 * 109.43194 * 333.80651 * 6 4 3 8 8 C 1.53075 * 109.43757 * 213.89289 * 6 4 3 9 9 C 1.53406 * 108.33412 * 191.76329 * 8 6 4 10 10 O 1.42902 * 108.33469 * 64.68301 * 9 8 6 11 11 C 1.35846 * 117.88130 * 310.83275 * 10 9 8 12 12 C 1.39149 * 118.49264 * 196.96398 * 11 10 9 13 13 C 1.37973 * 120.21349 * 180.40352 * 12 11 10 14 14 C 1.38287 * 119.95466 * 0.02562 * 13 12 11 15 15 C 1.38108 * 119.98721 * 359.93276 * 14 13 12 16 16 C 1.38365 * 121.80950 * 17.25286 * 11 10 9 17 17 C 1.46504 * 120.00091 * 264.24129 * 3 2 1 18 18 H 1.09001 * 110.88841 * 170.43455 * 17 3 2 19 19 C 1.55156 * 111.00260 * 294.31580 * 17 3 2 20 20 C 1.54325 * 102.94343 * 153.57560 * 19 17 3 21 21 N 1.47021 * 107.26899 * 337.80773 * 20 19 17 22 22 C 1.36944 * 125.65131 * 178.96040 * 21 20 19 23 23 H 1.07992 * 120.00254 * 179.97438 * 22 21 20 24 24 C 1.38817 * 119.99474 * 359.97438 * 22 21 20 25 25 N 1.31622 * 119.99923 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99797 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46953 * 60.00316 * 26 24 22 28 28 H 1.48502 * 109.46979 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47219 * 300.00070 * 26 24 22 30 30 C 1.47426 * 108.70586 * 358.93902 * 21 20 19 31 31 H 1.08998 * 109.47342 * 184.74719 * 1 2 3 32 32 H 1.08997 * 109.47249 * 304.74911 * 1 2 3 33 33 H 1.09003 * 109.47243 * 64.75207 * 1 2 3 34 34 H 1.09000 * 109.47391 * 240.00291 * 2 1 3 35 35 H 1.08995 * 109.47438 * 120.00079 * 2 1 3 36 36 H 1.09001 * 109.69557 * 311.48725 * 8 6 4 37 37 H 1.08995 * 109.69782 * 72.04047 * 8 6 4 38 38 H 1.08998 * 109.68260 * 184.45204 * 9 8 6 39 39 H 1.09003 * 109.68168 * 305.00502 * 9 8 6 40 40 H 1.08000 * 119.89332 * 0.39655 * 12 11 10 41 41 H 1.08000 * 120.01963 * 180.02562 * 13 12 11 42 42 H 1.08002 * 120.00571 * 179.91710 * 14 13 12 43 43 H 1.07997 * 119.83782 * 180.02562 * 15 14 13 44 44 H 1.08997 * 110.72177 * 271.94010 * 19 17 3 45 45 H 1.09009 * 110.71981 * 35.03680 * 19 17 3 46 46 H 1.08998 * 109.88327 * 97.22154 * 20 19 17 47 47 H 1.09001 * 109.88605 * 218.23912 * 20 19 17 48 48 H 0.96998 * 119.99674 * 180.02562 * 25 24 22 49 49 H 1.08997 * 110.36814 * 265.29033 * 30 21 20 50 50 H 1.09001 * 110.37005 * 142.96602 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1325 2.0555 1.1613 5 8 2.4596 3.2235 1.1546 6 6 1.8538 1.3585 2.4680 7 1 1.1619 0.5334 2.2985 8 6 1.2310 2.3516 3.4524 9 6 1.2305 1.7127 4.8470 10 8 2.5868 1.5265 5.2567 11 6 3.4379 0.9283 4.3830 12 6 4.6373 0.4172 4.8692 13 6 5.5316 -0.1901 4.0117 14 6 5.2365 -0.2913 2.6645 15 6 4.0466 0.2142 2.1787 16 6 3.1441 0.8228 3.0350 17 6 2.3826 2.0294 -1.2624 18 1 2.5629 3.0942 -1.1146 19 6 3.6151 1.3406 -1.9058 20 6 3.4318 1.6383 -3.4089 21 7 2.0062 1.9244 -3.6266 22 6 1.4327 2.2567 -4.8249 23 1 0.3714 2.4486 -4.8809 24 6 2.2156 2.3470 -5.9677 25 7 3.5092 2.1137 -5.8992 26 14 1.4333 2.7996 -7.6024 27 1 0.8005 4.1387 -7.4944 28 1 2.4764 2.8294 -8.6590 29 1 0.4013 1.7912 -7.9534 30 6 1.2962 1.7938 -2.3412 31 1 -0.3634 -1.0241 0.0850 32 1 -0.3633 0.5857 0.8444 33 1 -0.3634 0.4383 -0.9295 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.8183 3.2697 3.4690 37 1 0.2079 2.5755 3.1505 38 1 0.7199 2.3693 5.5515 39 1 0.7231 0.7487 4.8090 40 1 4.8690 0.4962 5.9210 41 1 6.4614 -0.5861 4.3925 42 1 5.9365 -0.7653 1.9924 43 1 3.8184 0.1334 1.1262 44 1 4.5404 1.7816 -1.5353 45 1 3.5988 0.2670 -1.7177 46 1 4.0309 2.5040 -3.6911 47 1 3.7324 0.7717 -3.9978 48 1 4.0563 2.1771 -6.6977 49 1 0.8729 0.7944 -2.2414 50 1 0.5131 2.5479 -2.2620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033992759.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:33 Heat of formation + Delta-G solvation = -13.260134 kcal Electronic energy + Delta-G solvation = -31559.528722 eV Core-core repulsion = 27552.844329 eV Total energy + Delta-G solvation = -4006.684393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.35978 -39.70711 -37.69049 -37.45695 -35.39202 -34.32160 -32.27583 -30.89887 -30.54308 -30.36181 -29.03381 -27.73557 -26.31247 -24.43097 -23.91896 -23.47923 -22.85282 -21.05576 -20.14383 -19.88833 -18.68544 -18.20938 -17.31988 -16.94712 -16.84861 -16.35997 -15.97771 -15.18520 -14.86725 -14.70161 -14.54411 -14.13615 -14.02413 -13.95877 -13.68900 -13.43914 -13.41315 -13.10366 -12.68436 -12.58709 -12.41666 -12.30191 -12.13389 -11.88756 -11.72923 -11.58419 -11.23938 -11.22845 -11.00852 -10.95790 -10.82811 -10.80264 -10.75615 -10.31124 -10.14245 -9.84467 -9.75006 -9.64052 -8.96157 -8.63541 -8.42241 -8.33647 -6.86510 -5.73185 -3.07582 1.08504 1.25235 2.64273 2.97058 3.09649 3.39769 3.44104 3.45301 3.58110 4.22177 4.39109 4.44699 4.48882 4.53493 4.84027 4.89312 4.90296 4.91981 5.00715 5.12161 5.19153 5.26943 5.28679 5.31317 5.35896 5.41163 5.44309 5.60275 5.62461 5.66790 5.73320 5.77053 5.80077 5.81061 5.89317 6.08773 6.10253 6.24082 6.25620 6.28406 6.36867 6.47254 6.55452 6.57884 6.68263 6.93809 7.21485 7.51511 7.54029 7.59072 7.79892 8.21696 8.27482 9.19039 9.79114 10.43977 11.38187 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020208 B = 0.002802 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.225316 B = 9989.820036 C =10655.302200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 N -0.596 5.596 4 C 0.526 3.474 5 O -0.534 6.534 6 C -0.067 4.067 7 H 0.105 0.895 8 C -0.148 4.148 9 C 0.065 3.935 10 O -0.316 6.316 11 C 0.140 3.860 12 C -0.151 4.151 13 C -0.085 4.085 14 C -0.148 4.148 15 C -0.083 4.083 16 C -0.148 4.148 17 C 0.123 3.877 18 H 0.105 0.895 19 C -0.153 4.153 20 C 0.180 3.820 21 N -0.603 5.603 22 C -0.230 4.230 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.921 5.921 26 Si 0.913 3.087 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.130 3.870 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.045 0.955 48 H 0.253 0.747 49 H 0.028 0.972 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 -7.787 22.699 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.027 4.027 3 N -0.328 5.328 4 C 0.313 3.687 5 O -0.410 6.410 6 C -0.088 4.088 7 H 0.122 0.878 8 C -0.186 4.186 9 C -0.010 4.010 10 O -0.230 6.230 11 C 0.095 3.905 12 C -0.170 4.170 13 C -0.103 4.103 14 C -0.167 4.167 15 C -0.101 4.101 16 C -0.149 4.149 17 C 0.019 3.981 18 H 0.123 0.877 19 C -0.192 4.192 20 C 0.055 3.945 21 N -0.329 5.329 22 C -0.358 4.358 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.568 5.568 26 Si 0.743 3.257 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.003 3.997 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.045 0.955 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.835 -7.049 22.627 23.771 hybrid contribution -0.525 0.119 -1.237 1.349 sum -2.360 -6.930 21.390 22.608 Atomic orbital electron populations 1.22379 0.95605 1.02209 1.03245 1.21642 0.94801 0.82904 1.03376 1.47997 1.64377 1.13843 1.06535 1.20143 0.77124 0.86687 0.84715 1.90693 1.47152 1.16192 1.86945 1.20257 0.95788 0.99050 0.93673 0.87768 1.22175 1.02955 0.99575 0.93882 1.23000 0.80664 1.00986 0.96375 1.85993 1.20633 1.74939 1.41430 1.18623 0.90915 0.93287 0.87664 1.20571 0.93511 1.02229 1.00697 1.20962 0.98577 0.97489 0.93254 1.21049 0.97410 1.02470 0.95733 1.21153 0.93409 0.95803 0.99715 1.19342 0.97755 1.05113 0.92721 1.22469 0.96115 0.98151 0.81324 0.87737 1.23252 0.96968 0.99387 0.99584 1.21127 0.85586 1.00232 0.87523 1.44377 1.03783 1.81880 1.02903 1.18993 0.92634 1.40307 0.83913 0.90471 1.24808 0.95720 1.01785 0.97961 1.69947 1.03870 1.55136 1.27893 0.86186 0.77881 0.78337 0.83265 1.21137 1.21567 1.21161 1.21851 0.93527 0.98239 0.86044 0.91527 0.92768 0.90906 0.89125 0.90738 0.88684 0.89355 0.87053 0.91639 0.85187 0.85335 0.85589 0.85267 0.91970 0.92274 0.93357 0.93682 0.93641 0.95469 0.94246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 9.64 37.15 0.36 -1.44 16 2 C 0.10 1.09 3.98 -4.04 -0.02 1.07 16 3 N -0.60 -8.68 2.01 -163.68 -0.33 -9.01 16 4 C 0.53 7.98 5.67 -10.99 -0.06 7.91 16 5 O -0.53 -10.26 15.42 5.55 0.09 -10.17 16 6 C -0.07 -0.77 2.00 -92.85 -0.19 -0.96 16 7 H 0.10 0.99 5.32 -51.93 -0.28 0.71 16 8 C -0.15 -1.53 5.33 -26.48 -0.14 -1.67 16 9 C 0.06 0.54 7.03 37.37 0.26 0.80 16 10 O -0.32 -3.55 10.27 -19.26 -0.20 -3.75 16 11 C 0.14 1.67 6.47 -39.20 -0.25 1.42 16 12 C -0.15 -1.59 9.94 -39.34 -0.39 -1.98 16 13 C -0.08 -0.81 10.04 -39.66 -0.40 -1.21 16 14 C -0.15 -1.57 10.04 -39.61 -0.40 -1.97 16 15 C -0.08 -1.00 8.44 -39.53 -0.33 -1.33 16 16 C -0.15 -1.81 5.41 -104.44 -0.57 -2.37 16 17 C 0.12 2.25 3.42 -65.78 -0.22 2.03 16 18 H 0.10 2.19 7.05 -51.93 -0.37 1.82 16 19 C -0.15 -2.85 6.51 -24.90 -0.16 -3.02 16 20 C 0.18 4.34 5.37 -3.06 -0.02 4.32 16 21 N -0.60 -15.23 3.39 -170.07 -0.58 -15.81 16 22 C -0.23 -6.38 10.28 -15.05 -0.15 -6.54 16 23 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 24 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 25 N -0.92 -26.92 10.31 55.49 0.57 -26.35 16 26 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 30 C 0.13 2.65 6.18 -2.53 -0.02 2.63 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.51 7.34 -51.93 -0.38 0.13 16 33 H 0.07 0.89 6.11 -51.93 -0.32 0.57 16 34 H 0.09 1.10 6.43 -51.93 -0.33 0.77 16 35 H 0.07 0.71 5.26 -51.93 -0.27 0.43 16 36 H 0.09 1.22 7.45 -51.93 -0.39 0.83 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 43 H 0.13 1.59 5.46 -52.49 -0.29 1.30 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.06 0.99 6.86 -51.92 -0.36 0.63 16 46 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 47 H 0.05 1.18 7.51 -51.93 -0.39 0.79 16 48 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.03 0.52 5.08 -51.93 -0.26 0.26 16 50 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -33.03 379.96 -9.90 -42.93 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.37 Total: 1.97 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.79 Total: -2.56 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.33 Total: -51.16 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.11 Total: -13.92 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.03 -9.90 -42.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033992759.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.674 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds