Wall clock time and date at job start Wed Apr 1 2020 02:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47462 * 2 1 4 4 C 1.34770 * 119.99796 * 84.23677 * 3 2 1 5 5 O 1.21289 * 119.99652 * 184.43716 * 4 3 2 6 6 C 1.50698 * 120.00350 * 4.43845 * 4 3 2 7 7 H 1.09004 * 109.43194 * 333.80651 * 6 4 3 8 8 C 1.53075 * 109.43757 * 213.89289 * 6 4 3 9 9 C 1.53406 * 108.33412 * 191.76329 * 8 6 4 10 10 O 1.42902 * 108.33469 * 64.68301 * 9 8 6 11 11 C 1.35846 * 117.88130 * 310.83275 * 10 9 8 12 12 C 1.39149 * 118.49264 * 196.96398 * 11 10 9 13 13 C 1.37973 * 120.21349 * 180.40352 * 12 11 10 14 14 C 1.38287 * 119.95466 * 0.02562 * 13 12 11 15 15 C 1.38108 * 119.98721 * 359.93276 * 14 13 12 16 16 C 1.38365 * 121.80950 * 17.25286 * 11 10 9 17 17 C 1.46504 * 120.00091 * 264.24129 * 3 2 1 18 18 H 1.09001 * 110.88841 * 170.43455 * 17 3 2 19 19 C 1.55156 * 111.00260 * 294.31580 * 17 3 2 20 20 C 1.54325 * 102.94343 * 153.57560 * 19 17 3 21 21 N 1.47021 * 107.26899 * 337.80773 * 20 19 17 22 22 C 1.36944 * 125.65131 * 178.96040 * 21 20 19 23 23 H 1.07992 * 120.00254 * 179.97438 * 22 21 20 24 24 C 1.38817 * 119.99474 * 359.97438 * 22 21 20 25 25 N 1.31622 * 119.99923 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99797 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46953 * 60.00316 * 26 24 22 28 28 H 1.48502 * 109.46979 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47219 * 300.00070 * 26 24 22 30 30 C 1.47426 * 108.70586 * 358.93902 * 21 20 19 31 31 H 1.08998 * 109.47342 * 184.74719 * 1 2 3 32 32 H 1.08997 * 109.47249 * 304.74911 * 1 2 3 33 33 H 1.09003 * 109.47243 * 64.75207 * 1 2 3 34 34 H 1.09000 * 109.47391 * 240.00291 * 2 1 3 35 35 H 1.08995 * 109.47438 * 120.00079 * 2 1 3 36 36 H 1.09001 * 109.69557 * 311.48725 * 8 6 4 37 37 H 1.08995 * 109.69782 * 72.04047 * 8 6 4 38 38 H 1.08998 * 109.68260 * 184.45204 * 9 8 6 39 39 H 1.09003 * 109.68168 * 305.00502 * 9 8 6 40 40 H 1.08000 * 119.89332 * 0.39655 * 12 11 10 41 41 H 1.08000 * 120.01963 * 180.02562 * 13 12 11 42 42 H 1.08002 * 120.00571 * 179.91710 * 14 13 12 43 43 H 1.07997 * 119.83782 * 180.02562 * 15 14 13 44 44 H 1.08997 * 110.72177 * 271.94010 * 19 17 3 45 45 H 1.09009 * 110.71981 * 35.03680 * 19 17 3 46 46 H 1.08998 * 109.88327 * 97.22154 * 20 19 17 47 47 H 1.09001 * 109.88605 * 218.23912 * 20 19 17 48 48 H 0.96998 * 119.99674 * 180.02562 * 25 24 22 49 49 H 1.08997 * 110.36814 * 265.29033 * 30 21 20 50 50 H 1.09001 * 110.37005 * 142.96602 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1325 2.0555 1.1613 5 8 2.4596 3.2235 1.1546 6 6 1.8538 1.3585 2.4680 7 1 1.1619 0.5334 2.2985 8 6 1.2310 2.3516 3.4524 9 6 1.2305 1.7127 4.8470 10 8 2.5868 1.5265 5.2567 11 6 3.4379 0.9283 4.3830 12 6 4.6373 0.4172 4.8692 13 6 5.5316 -0.1901 4.0117 14 6 5.2365 -0.2913 2.6645 15 6 4.0466 0.2142 2.1787 16 6 3.1441 0.8228 3.0350 17 6 2.3826 2.0294 -1.2624 18 1 2.5629 3.0942 -1.1146 19 6 3.6151 1.3406 -1.9058 20 6 3.4318 1.6383 -3.4089 21 7 2.0062 1.9244 -3.6266 22 6 1.4327 2.2567 -4.8249 23 1 0.3714 2.4486 -4.8809 24 6 2.2156 2.3470 -5.9677 25 7 3.5092 2.1137 -5.8992 26 14 1.4333 2.7996 -7.6024 27 1 0.8005 4.1387 -7.4944 28 1 2.4764 2.8294 -8.6590 29 1 0.4013 1.7912 -7.9534 30 6 1.2962 1.7938 -2.3412 31 1 -0.3634 -1.0241 0.0850 32 1 -0.3633 0.5857 0.8444 33 1 -0.3634 0.4383 -0.9295 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.8183 3.2697 3.4690 37 1 0.2079 2.5755 3.1505 38 1 0.7199 2.3693 5.5515 39 1 0.7231 0.7487 4.8090 40 1 4.8690 0.4962 5.9210 41 1 6.4614 -0.5861 4.3925 42 1 5.9365 -0.7653 1.9924 43 1 3.8184 0.1334 1.1262 44 1 4.5404 1.7816 -1.5353 45 1 3.5988 0.2670 -1.7177 46 1 4.0309 2.5040 -3.6911 47 1 3.7324 0.7717 -3.9978 48 1 4.0563 2.1771 -6.6977 49 1 0.8729 0.7944 -2.2414 50 1 0.5131 2.5479 -2.2620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033992759.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:32 Heat of formation + Delta-G solvation = -32.258369 kcal Electronic energy + Delta-G solvation = -31560.352548 eV Core-core repulsion = 27552.844329 eV Total energy + Delta-G solvation = -4007.508218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.30206 -40.83507 -39.03892 -38.45056 -36.77427 -35.34655 -34.10692 -31.84681 -31.64628 -31.18882 -30.69201 -29.29655 -27.44092 -26.24580 -24.76375 -24.45364 -23.73163 -22.27715 -22.04553 -20.93295 -19.87282 -19.13816 -18.88419 -18.40296 -17.69996 -17.29453 -17.07442 -16.69644 -16.04245 -15.90005 -15.88755 -15.52716 -15.15024 -14.88086 -14.74332 -14.67718 -14.32039 -14.21179 -14.09596 -13.86423 -13.78907 -13.55000 -13.41054 -13.06422 -12.94275 -12.77046 -12.62384 -12.45844 -12.34369 -12.19376 -12.09978 -12.07513 -11.98458 -11.80213 -11.71821 -11.58043 -11.49100 -10.88478 -10.72618 -9.80812 -9.73120 -9.14359 -8.92973 -7.86777 -5.23628 0.27417 0.44012 1.44909 1.46985 1.48728 1.54824 1.81463 2.35232 2.49153 2.76050 3.28531 3.32190 3.55077 3.58919 3.65567 3.74622 3.85729 3.93878 4.01767 4.07255 4.10159 4.18808 4.21140 4.34678 4.36162 4.46988 4.49839 4.51559 4.53278 4.57184 4.58180 4.66125 4.81799 4.83254 4.89038 4.93943 4.98197 5.01494 5.06759 5.13779 5.30372 5.38031 5.43240 5.44247 5.55573 5.57920 5.59126 5.70549 5.83218 6.15976 6.35338 6.45051 7.05694 7.07559 7.73021 8.36912 9.23158 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020208 B = 0.002802 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.225316 B = 9989.820036 C =10655.302200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.090 3.910 3 N -0.590 5.590 4 C 0.525 3.475 5 O -0.582 6.582 6 C -0.058 4.058 7 H 0.131 0.869 8 C -0.148 4.148 9 C 0.065 3.935 10 O -0.329 6.329 11 C 0.127 3.873 12 C -0.159 4.159 13 C -0.081 4.081 14 C -0.156 4.156 15 C -0.100 4.100 16 C -0.164 4.164 17 C 0.139 3.861 18 H 0.074 0.926 19 C -0.133 4.133 20 C 0.191 3.809 21 N -0.624 5.624 22 C -0.245 4.245 23 H 0.083 0.917 24 C -0.064 4.064 25 N -0.950 5.950 26 Si 0.980 3.020 27 H -0.280 1.280 28 H -0.294 1.294 29 H -0.273 1.273 30 C 0.134 3.866 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.088 0.912 40 H 0.146 0.854 41 H 0.158 0.842 42 H 0.141 0.859 43 H 0.123 0.877 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.007 0.993 47 H 0.017 0.983 48 H 0.248 0.752 49 H 0.052 0.948 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.355 -9.693 24.802 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.031 4.031 3 N -0.321 5.321 4 C 0.314 3.686 5 O -0.461 6.461 6 C -0.078 4.078 7 H 0.149 0.851 8 C -0.186 4.186 9 C -0.010 4.010 10 O -0.243 6.243 11 C 0.081 3.919 12 C -0.178 4.178 13 C -0.098 4.098 14 C -0.174 4.174 15 C -0.118 4.118 16 C -0.165 4.165 17 C 0.034 3.966 18 H 0.092 0.908 19 C -0.173 4.173 20 C 0.065 3.935 21 N -0.351 5.351 22 C -0.374 4.374 23 H 0.101 0.899 24 C -0.257 4.257 25 N -0.599 5.599 26 Si 0.808 3.192 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.199 1.199 30 C 0.008 3.992 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.154 0.846 39 H 0.106 0.894 40 H 0.164 0.836 41 H 0.175 0.825 42 H 0.159 0.841 43 H 0.141 0.859 44 H 0.086 0.914 45 H 0.105 0.895 46 H 0.025 0.975 47 H 0.036 0.964 48 H 0.057 0.943 49 H 0.070 0.930 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.111 -8.991 24.768 26.533 hybrid contribution -0.135 0.720 -1.825 1.967 sum -3.247 -8.271 22.943 24.604 Atomic orbital electron populations 1.22353 0.94269 1.04002 1.02488 1.21925 0.95860 0.80796 1.04509 1.47979 1.64135 1.14979 1.04972 1.20837 0.75791 0.86150 0.85779 1.90675 1.49268 1.18531 1.87653 1.20275 0.96477 0.99652 0.91426 0.85122 1.22183 1.03147 0.98088 0.95150 1.23254 0.79755 1.02526 0.95430 1.85975 1.21812 1.74903 1.41612 1.18855 0.91662 0.93613 0.87737 1.20903 0.93185 1.01886 1.01779 1.21313 0.99324 0.96476 0.92732 1.21321 0.97206 1.02272 0.96625 1.21231 0.94313 0.96759 0.99476 1.19428 0.98157 1.05823 0.93135 1.21929 0.95090 0.96859 0.82730 0.90826 1.23043 0.97442 1.01161 0.95606 1.20834 0.84786 0.97236 0.90630 1.44656 1.04637 1.81848 1.03996 1.19403 0.93134 1.39755 0.85124 0.89910 1.25667 0.96275 1.02298 1.01434 1.70171 1.05115 1.56339 1.28259 0.85136 0.76998 0.78284 0.78805 1.20577 1.22017 1.19892 1.21962 0.93524 0.99084 0.84595 0.88747 0.91723 0.93150 0.89549 0.88059 0.91867 0.87645 0.84627 0.89359 0.83609 0.82485 0.84117 0.85896 0.91434 0.89521 0.97468 0.96441 0.94312 0.93017 0.94960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 9.64 71.98 0.69 -2.31 16 2 C 0.09 1.83 3.98 86.38 0.34 2.18 16 3 N -0.59 -16.66 2.01 -790.14 -1.59 -18.24 16 4 C 0.53 15.66 5.67 87.66 0.50 16.16 16 5 O -0.58 -22.99 15.42 -3.06 -0.05 -23.04 16 6 C -0.06 -1.23 2.00 -12.24 -0.02 -1.26 16 7 H 0.13 2.03 5.32 -2.38 -0.01 2.01 16 8 C -0.15 -2.82 5.33 30.76 0.16 -2.66 16 9 C 0.06 0.90 7.03 72.12 0.51 1.41 16 10 O -0.33 -6.75 10.27 -91.82 -0.94 -7.69 16 11 C 0.13 2.80 6.47 22.52 0.15 2.94 16 12 C -0.16 -3.00 9.94 22.43 0.22 -2.78 16 13 C -0.08 -1.35 10.04 22.22 0.22 -1.12 16 14 C -0.16 -3.00 10.04 22.25 0.22 -2.77 16 15 C -0.10 -2.25 8.44 22.30 0.19 -2.06 16 16 C -0.16 -3.75 5.41 -19.75 -0.11 -3.86 16 17 C 0.14 5.15 3.42 46.38 0.16 5.31 16 18 H 0.07 3.22 7.05 -2.39 -0.02 3.21 16 19 C -0.13 -5.03 6.51 31.78 0.21 -4.83 16 20 C 0.19 9.56 5.37 86.73 0.47 10.02 16 21 N -0.62 -32.39 3.39 -691.98 -2.35 -34.74 16 22 C -0.25 -13.86 10.28 84.03 0.86 -13.00 16 23 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 24 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 25 N -0.95 -57.57 10.31 21.65 0.22 -57.35 16 26 Si 0.98 45.98 29.55 68.60 2.03 48.00 16 27 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 28 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 29 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 30 C 0.13 5.48 6.18 86.86 0.54 6.02 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.00 7.34 -2.39 -0.02 0.98 16 33 H 0.05 1.12 6.11 -2.39 -0.01 1.10 16 34 H 0.09 1.87 6.43 -2.39 -0.02 1.86 16 35 H 0.10 1.58 5.26 -2.39 -0.01 1.56 16 36 H 0.06 1.63 7.45 -2.39 -0.02 1.61 16 37 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.12 2.84 5.46 -2.91 -0.02 2.82 16 44 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.09 2.80 6.86 -2.38 -0.02 2.78 16 46 H 0.01 0.41 7.38 -2.39 -0.02 0.39 16 47 H 0.02 0.96 7.51 -2.39 -0.02 0.94 16 48 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 49 H 0.05 1.91 5.08 -2.39 -0.01 1.89 16 50 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -75.71 379.96 4.05 -71.66 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.95 Total: 17.17 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.78 Total: 4.23 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -3.71 Total: -110.33 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.99 Total: -30.73 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -75.71 4.05 -71.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033992759.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.399 kcal (2) G-P(sol) polarization free energy of solvation -75.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds