Wall clock time and date at job start Wed Apr 1 2020 02:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46774 * 2 1 4 4 C 1.34781 * 119.99699 * 84.79805 * 3 2 1 5 5 O 1.21274 * 119.99813 * 175.24005 * 4 3 2 6 6 C 1.50700 * 120.00001 * 355.52240 * 4 3 2 7 7 H 1.09003 * 109.44111 * 335.05938 * 6 4 3 8 8 C 1.53069 * 109.44225 * 94.98140 * 6 4 3 9 9 C 1.53417 * 108.27990 * 168.31601 * 8 6 4 10 10 O 1.42824 * 108.38847 * 295.26358 * 9 8 6 11 11 C 1.35844 * 117.87913 * 49.06824 * 10 9 8 12 12 C 1.39142 * 118.50259 * 163.06611 * 11 10 9 13 13 C 1.37967 * 120.21769 * 179.77372 * 12 11 10 14 14 C 1.38301 * 119.96091 * 359.97438 * 13 12 11 15 15 C 1.38104 * 119.97810 * 0.08780 * 14 13 12 16 16 C 1.38370 * 121.80457 * 342.99192 * 11 10 9 17 17 C 1.46492 * 119.99954 * 264.79575 * 3 2 1 18 18 H 1.09005 * 110.64087 * 180.70524 * 17 3 2 19 19 C 1.55152 * 110.72181 * 57.56048 * 17 3 2 20 20 C 1.55390 * 101.36775 * 277.04177 * 19 17 3 21 21 N 1.47424 * 104.87158 * 323.01672 * 20 19 17 22 22 C 1.36944 * 125.64430 * 204.16642 * 21 20 19 23 23 H 1.07996 * 119.99147 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00208 * 359.95862 * 22 21 20 25 25 N 1.31619 * 119.99774 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47091 * 89.99969 * 26 24 22 28 28 H 1.48496 * 109.47231 * 210.00327 * 26 24 22 29 29 H 1.48499 * 109.47149 * 329.99772 * 26 24 22 30 30 C 1.47025 * 108.70483 * 24.13198 * 21 20 19 31 31 H 1.09005 * 109.46831 * 53.63491 * 1 2 3 32 32 H 1.09004 * 109.46959 * 173.62968 * 1 2 3 33 33 H 1.08994 * 109.47311 * 293.62774 * 1 2 3 34 34 H 1.08995 * 109.47005 * 240.00051 * 2 1 3 35 35 H 1.08997 * 109.46663 * 120.00327 * 2 1 3 36 36 H 1.08995 * 109.70642 * 288.01431 * 8 6 4 37 37 H 1.09007 * 109.70335 * 48.62215 * 8 6 4 38 38 H 1.09000 * 109.67892 * 54.98963 * 9 8 6 39 39 H 1.09005 * 109.68172 * 175.49941 * 9 8 6 40 40 H 1.08002 * 119.89240 * 359.74672 * 12 11 10 41 41 H 1.08002 * 120.02566 * 179.97438 * 13 12 11 42 42 H 1.07994 * 120.01215 * 180.02562 * 14 13 12 43 43 H 1.07995 * 119.84219 * 179.97438 * 15 14 13 44 44 H 1.09005 * 111.00233 * 35.21583 * 19 17 3 45 45 H 1.09003 * 111.00569 * 159.06527 * 19 17 3 46 46 H 1.09000 * 110.34091 * 204.16908 * 20 19 17 47 47 H 1.09000 * 110.34808 * 81.87452 * 20 19 17 48 48 H 0.97001 * 120.00047 * 179.97438 * 25 24 22 49 49 H 1.08998 * 109.88155 * 239.51987 * 30 21 20 50 50 H 1.08996 * 109.87676 * 118.35582 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1431 2.0519 1.1625 5 8 2.6279 3.1634 1.1722 6 6 1.6861 1.4178 2.4509 7 1 0.9187 0.6739 2.2370 8 6 2.8757 0.7401 3.1354 9 6 2.4591 0.3639 4.5631 10 8 2.2017 1.5666 5.2891 11 6 1.3968 2.4967 4.7125 12 6 0.8473 3.4898 5.5173 13 6 0.0287 4.4550 4.9679 14 6 -0.2471 4.4369 3.6128 15 6 0.2955 3.4519 2.8112 16 6 1.1161 2.4790 3.3577 17 6 2.3709 2.0335 -1.2634 18 1 2.7260 3.0487 -1.0858 19 6 1.1617 2.0370 -2.2356 20 6 1.2677 0.6187 -2.8613 21 7 2.7147 0.3735 -3.0003 22 6 3.2961 -0.4900 -3.8901 23 1 4.3703 -0.5985 -3.9138 24 6 2.5046 -1.2258 -4.7613 25 7 1.1954 -1.0932 -4.7324 26 14 3.2975 -2.4041 -5.9746 27 1 3.4242 -3.7457 -5.3508 28 1 2.4539 -2.5022 -7.1927 29 1 4.6447 -1.9011 -6.3448 30 6 3.4304 1.2102 -2.0259 31 1 -0.3633 0.6094 -0.8276 32 1 -0.3633 -1.0214 -0.1140 33 1 -0.3633 0.4119 0.9414 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.1534 -0.1586 2.5847 37 1 3.7211 1.4275 3.1684 38 1 1.5569 -0.2472 4.5333 39 1 3.2630 -0.1920 5.0457 40 1 1.0619 3.5050 6.5757 41 1 -0.3965 5.2242 5.5956 42 1 -0.8875 5.1922 3.1818 43 1 0.0783 3.4396 1.7534 44 1 0.2244 2.1592 -1.6928 45 1 1.2743 2.8095 -2.9964 46 1 0.7840 0.5983 -3.8379 47 1 0.8192 -0.1221 -2.1994 48 1 0.6423 -1.6072 -5.3414 49 1 4.1167 1.8791 -2.5450 50 1 3.9811 0.5786 -1.3289 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033992761.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:40 Heat of formation + Delta-G solvation = -6.240404 kcal Electronic energy + Delta-G solvation = -31840.840501 eV Core-core repulsion = 27834.460506 eV Total energy + Delta-G solvation = -4006.379995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.25922 -39.74376 -37.68622 -37.47950 -34.97748 -34.19029 -32.22967 -30.80121 -30.49403 -30.31900 -29.27528 -27.34098 -26.25497 -24.57880 -24.01334 -23.10516 -22.64241 -21.13724 -20.22303 -19.87224 -18.61591 -17.88915 -17.47436 -17.04383 -16.74295 -16.06533 -15.79301 -15.18803 -14.81002 -14.69454 -14.41920 -14.21365 -13.98149 -13.82467 -13.60321 -13.49076 -13.31721 -12.91994 -12.76269 -12.47491 -12.16365 -12.13765 -11.91995 -11.71126 -11.64602 -11.49230 -11.27776 -11.09135 -11.03686 -10.95210 -10.91003 -10.74251 -10.57082 -10.26693 -10.15474 -9.90173 -9.59663 -9.40063 -8.86964 -8.70171 -8.32692 -8.25242 -6.90234 -5.72085 -3.13946 1.21225 1.36010 2.71439 3.07777 3.20775 3.35131 3.41239 3.42578 3.69439 4.28843 4.43498 4.45788 4.53786 4.61461 4.88526 4.96397 4.97627 5.11549 5.19232 5.24317 5.29946 5.35160 5.36332 5.40230 5.42048 5.43979 5.57406 5.64192 5.68932 5.72175 5.79395 5.86718 5.91459 5.99161 6.10680 6.17699 6.27345 6.35150 6.36559 6.40322 6.46585 6.56310 6.61446 6.66556 6.69034 7.01991 7.29857 7.42821 7.56684 7.69009 7.79297 8.29115 8.36985 9.15414 9.75740 10.40019 11.31231 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021766 B = 0.002871 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.102169 B = 9749.877631 C =10194.573895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 N -0.588 5.588 4 C 0.523 3.477 5 O -0.539 6.539 6 C -0.069 4.069 7 H 0.107 0.893 8 C -0.150 4.150 9 C 0.066 3.934 10 O -0.317 6.317 11 C 0.137 3.863 12 C -0.154 4.154 13 C -0.087 4.087 14 C -0.153 4.153 15 C -0.061 4.061 16 C -0.138 4.138 17 C 0.125 3.875 18 H 0.098 0.902 19 C -0.158 4.158 20 C 0.142 3.858 21 N -0.603 5.603 22 C -0.223 4.223 23 H 0.077 0.923 24 C -0.009 4.009 25 N -0.921 5.921 26 Si 0.913 3.087 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.127 3.873 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.116 0.884 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.104 0.896 47 H 0.029 0.971 48 H 0.252 0.748 49 H 0.032 0.968 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 4.573 18.796 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.031 4.031 3 N -0.319 5.319 4 C 0.310 3.690 5 O -0.416 6.416 6 C -0.090 4.090 7 H 0.125 0.875 8 C -0.188 4.188 9 C -0.009 4.009 10 O -0.231 6.231 11 C 0.092 3.908 12 C -0.173 4.173 13 C -0.105 4.105 14 C -0.171 4.171 15 C -0.079 4.079 16 C -0.139 4.139 17 C 0.022 3.978 18 H 0.116 0.884 19 C -0.197 4.197 20 C 0.017 3.983 21 N -0.329 5.329 22 C -0.351 4.351 23 H 0.094 0.906 24 C -0.205 4.205 25 N -0.570 5.570 26 Si 0.744 3.256 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.001 3.999 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.122 0.878 47 H 0.047 0.953 48 H 0.063 0.937 49 H 0.050 0.950 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.402 5.007 18.782 19.734 hybrid contribution 0.358 -0.833 -0.972 1.329 sum -3.044 4.174 17.811 18.545 Atomic orbital electron populations 1.22407 0.95964 1.02933 1.01939 1.21890 0.94526 0.82317 1.04410 1.47957 1.63984 1.14144 1.05846 1.20170 0.78613 0.85690 0.84559 1.90681 1.44484 1.19877 1.86524 1.20309 0.98883 0.97046 0.92768 0.87488 1.22204 0.97911 1.02307 0.96385 1.22967 1.01739 0.84710 0.91523 1.85972 1.63817 1.27657 1.45637 1.18615 0.91296 0.90462 0.90436 1.20519 1.00748 0.96253 0.99737 1.20907 0.96923 0.97492 0.95153 1.20995 1.02516 0.99698 0.93910 1.20883 0.94462 0.92969 0.99622 1.19299 1.02677 0.99685 0.92286 1.22141 0.96529 0.96795 0.82331 0.88390 1.23500 0.96276 1.02074 0.97848 1.22299 0.85572 0.88749 1.01655 1.44542 1.01911 1.47317 1.39160 1.19064 0.91485 1.14504 1.10031 0.90556 1.24760 0.95558 1.00317 0.99835 1.69792 1.02591 1.44231 1.40342 0.86088 0.78106 0.80768 0.80622 1.21668 1.21676 1.20748 1.21625 0.93598 0.93167 0.91533 0.90739 0.91427 0.93465 0.86610 0.91836 0.88964 0.89546 0.91458 0.87023 0.85337 0.85520 0.85891 0.86174 0.91882 0.91175 0.87802 0.95304 0.93736 0.95003 0.95576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 8.93 37.16 0.33 -1.98 16 2 C 0.09 1.34 4.69 -4.04 -0.02 1.32 16 3 N -0.59 -9.35 2.44 -164.03 -0.40 -9.75 16 4 C 0.52 8.24 5.59 -10.98 -0.06 8.18 16 5 O -0.54 -10.26 15.21 5.56 0.08 -10.18 16 6 C -0.07 -0.88 1.89 -92.85 -0.18 -1.05 16 7 H 0.11 1.21 4.88 -51.93 -0.25 0.96 16 8 C -0.15 -1.63 5.41 -26.48 -0.14 -1.77 16 9 C 0.07 0.60 7.03 37.37 0.26 0.86 16 10 O -0.32 -3.80 10.27 -19.25 -0.20 -4.00 16 11 C 0.14 1.76 6.47 -39.20 -0.25 1.51 16 12 C -0.15 -1.75 9.94 -39.35 -0.39 -2.14 16 13 C -0.09 -0.90 10.04 -39.66 -0.40 -1.30 16 14 C -0.15 -1.75 10.05 -39.61 -0.40 -2.15 16 15 C -0.06 -0.82 8.57 -39.53 -0.34 -1.16 16 16 C -0.14 -1.86 5.12 -104.44 -0.53 -2.39 16 17 C 0.13 2.26 3.57 -66.10 -0.24 2.03 16 18 H 0.10 1.81 7.00 -51.93 -0.36 1.45 16 19 C -0.16 -2.90 6.16 -24.32 -0.15 -3.05 16 20 C 0.14 3.14 4.79 -2.27 -0.01 3.13 16 21 N -0.60 -14.43 2.93 -169.77 -0.50 -14.92 16 22 C -0.22 -5.91 10.27 -15.06 -0.15 -6.06 16 23 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 24 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 25 N -0.92 -25.41 10.09 55.49 0.56 -24.85 16 26 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 C 0.13 2.62 6.21 -3.06 -0.02 2.60 16 31 H 0.07 1.11 4.98 -51.93 -0.26 0.85 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.54 6.48 -51.93 -0.34 0.21 16 34 H 0.12 2.13 4.93 -51.93 -0.26 1.87 16 35 H 0.06 0.77 6.08 -51.93 -0.32 0.46 16 36 H 0.09 0.85 7.30 -51.93 -0.38 0.48 16 37 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.66 7.33 -52.49 -0.38 1.28 16 44 H 0.06 1.06 6.59 -51.93 -0.34 0.71 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.10 2.69 5.87 -51.93 -0.30 2.38 16 47 H 0.03 0.64 4.25 -51.93 -0.22 0.42 16 48 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 49 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -30.72 374.83 -9.79 -40.51 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.18 Total: 4.97 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.78 Total: -3.76 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.34 Total: -49.52 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.11 Total: -14.17 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.72 -9.79 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033992761.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.274 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds