Wall clock time and date at job start Wed Apr 1 2020 02:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46774 * 2 1 4 4 C 1.34781 * 119.99699 * 84.79805 * 3 2 1 5 5 O 1.21274 * 119.99813 * 175.24005 * 4 3 2 6 6 C 1.50700 * 120.00001 * 355.52240 * 4 3 2 7 7 H 1.09003 * 109.44111 * 335.05938 * 6 4 3 8 8 C 1.53069 * 109.44225 * 94.98140 * 6 4 3 9 9 C 1.53417 * 108.27990 * 168.31601 * 8 6 4 10 10 O 1.42824 * 108.38847 * 295.26358 * 9 8 6 11 11 C 1.35844 * 117.87913 * 49.06824 * 10 9 8 12 12 C 1.39142 * 118.50259 * 163.06611 * 11 10 9 13 13 C 1.37967 * 120.21769 * 179.77372 * 12 11 10 14 14 C 1.38301 * 119.96091 * 359.97438 * 13 12 11 15 15 C 1.38104 * 119.97810 * 0.08780 * 14 13 12 16 16 C 1.38370 * 121.80457 * 342.99192 * 11 10 9 17 17 C 1.46492 * 119.99954 * 264.79575 * 3 2 1 18 18 H 1.09005 * 110.64087 * 180.70524 * 17 3 2 19 19 C 1.55152 * 110.72181 * 57.56048 * 17 3 2 20 20 C 1.55390 * 101.36775 * 277.04177 * 19 17 3 21 21 N 1.47424 * 104.87158 * 323.01672 * 20 19 17 22 22 C 1.36944 * 125.64430 * 204.16642 * 21 20 19 23 23 H 1.07996 * 119.99147 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00208 * 359.95862 * 22 21 20 25 25 N 1.31619 * 119.99774 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47091 * 89.99969 * 26 24 22 28 28 H 1.48496 * 109.47231 * 210.00327 * 26 24 22 29 29 H 1.48499 * 109.47149 * 329.99772 * 26 24 22 30 30 C 1.47025 * 108.70483 * 24.13198 * 21 20 19 31 31 H 1.09005 * 109.46831 * 53.63491 * 1 2 3 32 32 H 1.09004 * 109.46959 * 173.62968 * 1 2 3 33 33 H 1.08994 * 109.47311 * 293.62774 * 1 2 3 34 34 H 1.08995 * 109.47005 * 240.00051 * 2 1 3 35 35 H 1.08997 * 109.46663 * 120.00327 * 2 1 3 36 36 H 1.08995 * 109.70642 * 288.01431 * 8 6 4 37 37 H 1.09007 * 109.70335 * 48.62215 * 8 6 4 38 38 H 1.09000 * 109.67892 * 54.98963 * 9 8 6 39 39 H 1.09005 * 109.68172 * 175.49941 * 9 8 6 40 40 H 1.08002 * 119.89240 * 359.74672 * 12 11 10 41 41 H 1.08002 * 120.02566 * 179.97438 * 13 12 11 42 42 H 1.07994 * 120.01215 * 180.02562 * 14 13 12 43 43 H 1.07995 * 119.84219 * 179.97438 * 15 14 13 44 44 H 1.09005 * 111.00233 * 35.21583 * 19 17 3 45 45 H 1.09003 * 111.00569 * 159.06527 * 19 17 3 46 46 H 1.09000 * 110.34091 * 204.16908 * 20 19 17 47 47 H 1.09000 * 110.34808 * 81.87452 * 20 19 17 48 48 H 0.97001 * 120.00047 * 179.97438 * 25 24 22 49 49 H 1.08998 * 109.88155 * 239.51987 * 30 21 20 50 50 H 1.08996 * 109.87676 * 118.35582 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1431 2.0519 1.1625 5 8 2.6279 3.1634 1.1722 6 6 1.6861 1.4178 2.4509 7 1 0.9187 0.6739 2.2370 8 6 2.8757 0.7401 3.1354 9 6 2.4591 0.3639 4.5631 10 8 2.2017 1.5666 5.2891 11 6 1.3968 2.4967 4.7125 12 6 0.8473 3.4898 5.5173 13 6 0.0287 4.4550 4.9679 14 6 -0.2471 4.4369 3.6128 15 6 0.2955 3.4519 2.8112 16 6 1.1161 2.4790 3.3577 17 6 2.3709 2.0335 -1.2634 18 1 2.7260 3.0487 -1.0858 19 6 1.1617 2.0370 -2.2356 20 6 1.2677 0.6187 -2.8613 21 7 2.7147 0.3735 -3.0003 22 6 3.2961 -0.4900 -3.8901 23 1 4.3703 -0.5985 -3.9138 24 6 2.5046 -1.2258 -4.7613 25 7 1.1954 -1.0932 -4.7324 26 14 3.2975 -2.4041 -5.9746 27 1 3.4242 -3.7457 -5.3508 28 1 2.4539 -2.5022 -7.1927 29 1 4.6447 -1.9011 -6.3448 30 6 3.4304 1.2102 -2.0259 31 1 -0.3633 0.6094 -0.8276 32 1 -0.3633 -1.0214 -0.1140 33 1 -0.3633 0.4119 0.9414 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.1534 -0.1586 2.5847 37 1 3.7211 1.4275 3.1684 38 1 1.5569 -0.2472 4.5333 39 1 3.2630 -0.1920 5.0457 40 1 1.0619 3.5050 6.5757 41 1 -0.3965 5.2242 5.5956 42 1 -0.8875 5.1922 3.1818 43 1 0.0783 3.4396 1.7534 44 1 0.2244 2.1592 -1.6928 45 1 1.2743 2.8095 -2.9964 46 1 0.7840 0.5983 -3.8379 47 1 0.8192 -0.1221 -2.1994 48 1 0.6423 -1.6072 -5.3414 49 1 4.1167 1.8791 -2.5450 50 1 3.9811 0.5786 -1.3289 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033992761.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:38 Heat of formation + Delta-G solvation = -22.602169 kcal Electronic energy + Delta-G solvation = -31841.550000 eV Core-core repulsion = 27834.460506 eV Total energy + Delta-G solvation = -4007.089494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.27848 -40.95025 -39.08318 -38.41145 -36.40230 -35.34080 -33.96979 -31.87125 -31.59787 -31.24278 -30.98154 -28.82545 -27.41712 -26.38350 -24.88393 -24.22651 -23.65469 -22.37264 -22.02174 -20.89780 -19.91070 -18.93239 -18.79507 -18.68233 -17.66266 -17.21511 -16.86631 -16.71454 -16.14656 -15.84075 -15.69590 -15.61640 -15.26857 -14.90584 -14.68829 -14.59441 -14.34586 -14.17952 -13.96169 -13.76949 -13.64730 -13.42516 -13.24372 -13.09507 -12.94572 -12.84120 -12.69850 -12.54315 -12.27039 -12.15860 -12.06303 -12.02841 -11.83747 -11.77049 -11.66769 -11.59959 -11.39636 -10.73765 -10.63483 -9.77111 -9.69515 -9.12985 -8.85484 -7.75053 -5.18598 0.32890 0.47228 1.48142 1.48813 1.49701 1.57826 1.89890 2.35809 2.50494 2.79124 3.30197 3.35142 3.54104 3.62357 3.68835 3.73902 3.87287 3.97388 4.01431 4.09171 4.11825 4.21684 4.27451 4.35695 4.38767 4.43230 4.52593 4.55101 4.58895 4.63041 4.65027 4.68553 4.80758 4.85713 4.91140 4.94033 4.96512 5.00870 5.04428 5.18315 5.31896 5.38332 5.48575 5.49104 5.58346 5.61948 5.70712 5.84922 5.85194 6.33824 6.41639 6.46678 7.09763 7.13989 7.79047 8.42903 9.25674 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021766 B = 0.002871 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.102169 B = 9749.877631 C =10194.573895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.094 3.906 3 N -0.587 5.587 4 C 0.525 3.475 5 O -0.574 6.574 6 C -0.062 4.062 7 H 0.123 0.877 8 C -0.148 4.148 9 C 0.064 3.936 10 O -0.327 6.327 11 C 0.123 3.877 12 C -0.161 4.161 13 C -0.082 4.082 14 C -0.160 4.160 15 C -0.082 4.082 16 C -0.157 4.157 17 C 0.138 3.862 18 H 0.096 0.904 19 C -0.143 4.143 20 C 0.150 3.850 21 N -0.617 5.617 22 C -0.237 4.237 23 H 0.075 0.925 24 C -0.058 4.058 25 N -0.941 5.941 26 Si 0.974 3.026 27 H -0.286 1.286 28 H -0.295 1.295 29 H -0.276 1.276 30 C 0.130 3.870 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.159 0.841 42 H 0.140 0.860 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.031 0.969 48 H 0.247 0.753 49 H 0.027 0.973 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.040 4.206 21.063 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.028 4.028 3 N -0.318 5.318 4 C 0.314 3.686 5 O -0.454 6.454 6 C -0.083 4.083 7 H 0.141 0.859 8 C -0.186 4.186 9 C -0.010 4.010 10 O -0.242 6.242 11 C 0.078 3.922 12 C -0.180 4.180 13 C -0.099 4.099 14 C -0.178 4.178 15 C -0.101 4.101 16 C -0.159 4.159 17 C 0.033 3.967 18 H 0.114 0.886 19 C -0.182 4.182 20 C 0.025 3.975 21 N -0.344 5.344 22 C -0.366 4.366 23 H 0.093 0.907 24 C -0.251 4.251 25 N -0.591 5.591 26 Si 0.803 3.197 27 H -0.213 1.213 28 H -0.222 1.222 29 H -0.201 1.201 30 C 0.003 3.997 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.157 0.843 40 H 0.165 0.835 41 H 0.177 0.823 42 H 0.158 0.842 43 H 0.125 0.875 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.045 0.955 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.721 4.633 21.070 21.892 hybrid contribution 0.483 -0.674 -1.636 1.834 sum -3.238 3.959 19.434 20.096 Atomic orbital electron populations 1.22332 0.94697 1.03283 1.02301 1.21891 0.95507 0.81320 1.04109 1.47960 1.63959 1.14633 1.05208 1.20712 0.77510 0.85141 0.85196 1.90660 1.46105 1.21576 1.87035 1.20318 0.99940 0.97189 0.90874 0.85899 1.22228 0.96295 1.02245 0.97867 1.23232 1.03523 0.84058 0.90206 1.85957 1.63657 1.28387 1.46166 1.18843 0.91649 0.91228 0.90446 1.20885 1.00477 0.95913 1.00675 1.21287 0.95995 0.97657 0.94987 1.21284 1.02477 0.99537 0.94507 1.20949 0.95608 0.94179 0.99338 1.19418 1.03341 1.00251 0.92861 1.21845 0.95393 0.96338 0.83105 0.88637 1.23343 0.97444 0.99585 0.97820 1.22084 0.84516 0.90941 0.99931 1.44718 1.02917 1.47338 1.39446 1.19338 0.91682 1.14965 1.10583 0.90722 1.25476 0.96123 1.01984 1.01488 1.70023 1.03470 1.44793 1.40798 0.85140 0.77331 0.78895 0.78293 1.21256 1.22151 1.20108 1.21660 0.94083 0.92829 0.91083 0.92606 0.90574 0.91308 0.90166 0.88793 0.87213 0.91734 0.89667 0.84338 0.83529 0.82335 0.84186 0.87502 0.89969 0.91363 0.91520 0.95104 0.94322 0.95508 0.95621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.93 71.98 0.64 -3.56 16 2 C 0.09 2.65 4.69 86.38 0.41 3.05 16 3 N -0.59 -18.31 2.44 -791.27 -1.93 -20.24 16 4 C 0.53 16.23 5.59 87.66 0.49 16.72 16 5 O -0.57 -21.97 15.21 -3.01 -0.05 -22.02 16 6 C -0.06 -1.49 1.89 -12.24 -0.02 -1.51 16 7 H 0.12 2.46 4.88 -2.39 -0.01 2.45 16 8 C -0.15 -2.92 5.41 30.76 0.17 -2.76 16 9 C 0.06 0.98 7.03 72.12 0.51 1.49 16 10 O -0.33 -7.16 10.27 -91.80 -0.94 -8.10 16 11 C 0.12 2.97 6.47 22.52 0.15 3.12 16 12 C -0.16 -3.30 9.94 22.42 0.22 -3.07 16 13 C -0.08 -1.49 10.04 22.22 0.22 -1.26 16 14 C -0.16 -3.41 10.05 22.25 0.22 -3.19 16 15 C -0.08 -2.15 8.57 22.30 0.19 -1.96 16 16 C -0.16 -4.05 5.12 -19.74 -0.10 -4.15 16 17 C 0.14 4.98 3.57 46.18 0.16 5.14 16 18 H 0.10 3.56 7.00 -2.38 -0.02 3.54 16 19 C -0.14 -5.28 6.16 32.15 0.20 -5.08 16 20 C 0.15 6.79 4.79 87.02 0.42 7.20 16 21 N -0.62 -30.17 2.93 -691.02 -2.02 -32.19 16 22 C -0.24 -12.76 10.27 84.03 0.86 -11.90 16 23 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 24 C -0.06 -3.12 5.49 84.86 0.47 -2.66 16 25 N -0.94 -53.05 10.09 21.65 0.22 -52.83 16 26 Si 0.97 44.25 29.55 68.60 2.03 46.28 16 27 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 28 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 29 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 30 C 0.13 5.40 6.21 86.73 0.54 5.94 16 31 H 0.05 1.61 4.98 -2.38 -0.01 1.60 16 32 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.07 1.42 6.48 -2.39 -0.02 1.40 16 34 H 0.08 2.93 4.93 -2.39 -0.01 2.92 16 35 H 0.09 2.06 6.08 -2.39 -0.01 2.05 16 36 H 0.11 1.73 7.30 -2.39 -0.02 1.71 16 37 H 0.06 1.57 8.10 -2.38 -0.02 1.55 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.14 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 41 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 43 H 0.11 2.96 7.33 -2.91 -0.02 2.94 16 44 H 0.08 2.72 6.59 -2.38 -0.02 2.71 16 45 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.07 3.57 5.87 -2.39 -0.01 3.56 16 47 H 0.03 1.39 4.25 -2.39 -0.01 1.38 16 48 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 49 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.03 1.08 8.00 -2.39 -0.02 1.06 16 Total: -1.00 -67.93 374.83 4.00 -63.93 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.96 Total: 23.60 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 5.74 Total: 1.57 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -3.74 Total: -105.26 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.99 Total: -30.11 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -67.93 4.00 -63.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033992761.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.323 kcal (2) G-P(sol) polarization free energy of solvation -67.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds