Wall clock time and date at job start Wed Apr 1 2020 02:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47399 * 2 1 4 4 C 1.34779 * 119.99704 * 90.00075 * 3 2 1 5 5 O 1.21287 * 119.99307 * 175.89187 * 4 3 2 6 6 C 1.50696 * 120.00256 * 355.88435 * 4 3 2 7 7 H 1.08998 * 110.66702 * 306.76157 * 6 4 3 8 8 C 1.54710 * 110.74312 * 70.17238 * 6 4 3 9 9 C 1.51641 * 101.90707 * 92.96638 * 8 6 4 10 10 C 1.38917 * 107.03074 * 15.67717 * 9 8 6 11 11 C 1.39254 * 118.86907 * 180.59530 * 10 9 8 12 12 C 1.37972 * 120.23902 * 359.69336 * 11 10 9 13 13 C 1.38243 * 120.35692 * 0.02562 * 12 11 10 14 14 C 1.37705 * 132.17651 * 195.85085 * 9 8 6 15 15 C 1.50699 * 120.00907 * 359.53857 * 14 9 8 16 16 O 1.36125 * 111.24506 * 0.64024 * 10 9 8 17 17 C 1.46495 * 120.00028 * 269.99666 * 3 2 1 18 18 H 1.08995 * 110.64359 * 178.15670 * 17 3 2 19 19 C 1.55163 * 110.71873 * 55.01444 * 17 3 2 20 20 C 1.55381 * 101.36650 * 277.04467 * 19 17 3 21 21 N 1.47429 * 104.87610 * 323.01371 * 20 19 17 22 22 C 1.36936 * 125.65340 * 204.09952 * 21 20 19 23 23 H 1.07999 * 120.00181 * 180.02562 * 22 21 20 24 24 C 1.38816 * 119.99828 * 0.03984 * 22 21 20 25 25 N 1.31623 * 120.00056 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00085 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47231 * 60.00169 * 26 24 22 28 28 H 1.48504 * 109.47093 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47156 * 300.00066 * 26 24 22 30 30 C 1.47030 * 108.69987 * 24.13612 * 21 20 19 31 31 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47328 * 300.00403 * 1 2 3 33 33 H 1.09003 * 109.47052 * 60.00156 * 1 2 3 34 34 H 1.09002 * 109.47328 * 239.99597 * 2 1 3 35 35 H 1.09003 * 109.47052 * 119.99844 * 2 1 3 36 36 H 1.08998 * 110.93726 * 211.12099 * 8 6 4 37 37 H 1.09004 * 110.94175 * 334.80567 * 8 6 4 38 38 H 1.08003 * 119.87705 * 179.69323 * 11 10 9 39 39 H 1.08007 * 119.81582 * 180.02562 * 12 11 10 40 40 H 1.07999 * 120.11675 * 180.17142 * 13 12 11 41 41 H 1.08996 * 109.46944 * 90.00301 * 15 14 9 42 42 H 1.09001 * 109.47006 * 210.00345 * 15 14 9 43 43 H 1.08997 * 109.47222 * 329.99882 * 15 14 9 44 44 H 1.09001 * 111.00130 * 35.21625 * 19 17 3 45 45 H 1.08999 * 111.00324 * 159.06028 * 19 17 3 46 46 H 1.09006 * 110.34618 * 204.16869 * 20 19 17 47 47 H 1.09000 * 110.45035 * 81.91626 * 20 19 17 48 48 H 0.96991 * 120.00110 * 179.97438 * 25 24 22 49 49 H 1.08996 * 109.87773 * 239.52305 * 30 21 20 50 50 H 1.08996 * 109.88185 * 118.35638 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.7175 3.1327 1.1685 6 6 1.9045 1.3401 2.4706 7 1 0.8701 0.9965 2.4685 8 6 2.8750 0.1675 2.7477 9 6 3.9459 0.8389 3.5854 10 6 3.4211 2.0483 4.0234 11 6 4.2135 2.8789 4.8118 12 6 5.4946 2.4974 5.1534 13 6 6.0037 1.2887 4.7164 14 6 5.2239 0.4589 3.9299 15 6 5.7733 -0.8597 3.4501 16 8 2.1459 2.2222 3.5799 17 6 2.2626 2.0718 -1.2687 18 1 2.5901 3.0962 -1.0917 19 6 0.9929 2.0475 -2.1602 20 6 1.1109 0.6471 -2.8231 21 7 2.5539 0.4613 -3.0610 22 6 3.1078 -0.3619 -4.0048 23 1 4.1815 -0.4286 -4.1000 24 6 2.2891 -1.1105 -4.8393 25 7 0.9805 -1.0286 -4.7237 26 14 3.0446 -2.2340 -6.1262 27 1 3.8989 -3.2482 -5.4579 28 1 1.9643 -2.9169 -6.8826 29 1 3.8710 -1.4296 -7.0618 30 6 3.3000 1.3057 -2.1164 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.3793 -0.6237 3.3101 37 1 3.2930 -0.2201 1.8186 38 1 3.8236 3.8251 5.1570 39 1 6.1031 3.1468 5.7655 40 1 7.0061 0.9927 4.9884 41 1 6.2698 -0.7187 2.4901 42 1 6.4901 -1.2410 4.1774 43 1 4.9573 -1.5733 3.3357 44 1 0.0893 2.1222 -1.5552 45 1 1.0262 2.8388 -2.9091 46 1 0.5653 0.6272 -3.7665 47 1 0.7346 -0.1249 -2.1518 48 1 0.4085 -1.5514 -5.3070 49 1 3.9250 2.0111 -2.6638 50 1 3.9187 0.6824 -1.4709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034017750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:38 Heat of formation + Delta-G solvation = 6.773132 kcal Electronic energy + Delta-G solvation = -31777.704397 eV Core-core repulsion = 27771.888712 eV Total energy + Delta-G solvation = -4005.815685 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.69991 -39.75126 -37.96963 -37.09754 -35.00244 -33.48107 -32.37798 -31.29461 -30.59536 -29.92481 -29.11155 -27.16861 -26.73666 -24.77810 -24.47935 -22.79927 -22.33481 -21.06125 -20.85256 -20.22723 -18.86242 -17.60065 -17.20995 -16.88320 -16.74415 -16.01171 -15.88076 -15.08568 -14.75634 -14.59204 -14.23945 -13.98699 -13.84666 -13.76533 -13.66189 -13.16733 -13.13918 -12.87322 -12.79157 -12.57573 -12.44956 -12.23022 -12.03413 -11.71331 -11.69994 -11.63172 -11.55932 -11.38099 -11.10191 -11.00474 -10.90809 -10.88476 -10.46751 -10.28536 -10.18226 -9.90138 -9.60043 -9.49177 -8.78144 -8.69533 -8.36770 -8.18642 -6.89652 -5.71734 -3.13478 1.16846 1.26011 2.57875 2.89539 3.32173 3.36179 3.41236 3.41736 3.60856 4.20041 4.27733 4.42749 4.44448 4.64651 4.82623 4.97115 5.05581 5.14413 5.17917 5.29774 5.32572 5.34123 5.40454 5.44259 5.47073 5.48593 5.55701 5.61545 5.64120 5.67985 5.70450 5.85133 5.97494 5.98953 6.08963 6.21753 6.26873 6.28879 6.33674 6.39887 6.42151 6.47789 6.55673 6.61062 6.68385 6.97602 7.07626 7.42506 7.56340 7.62264 7.79116 8.27461 8.30229 9.15762 9.76040 10.40484 11.31591 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.003140 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.945790 B = 8913.676421 C = 9692.415600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.082 3.918 3 N -0.583 5.583 4 C 0.498 3.502 5 O -0.530 6.530 6 C 0.066 3.934 7 H 0.140 0.860 8 C -0.101 4.101 9 C -0.175 4.175 10 C 0.119 3.881 11 C -0.141 4.141 12 C -0.082 4.082 13 C -0.153 4.153 14 C -0.034 4.034 15 C -0.117 4.117 16 O -0.277 6.277 17 C 0.126 3.874 18 H 0.098 0.902 19 C -0.159 4.159 20 C 0.139 3.861 21 N -0.602 5.602 22 C -0.223 4.223 23 H 0.076 0.924 24 C -0.008 4.008 25 N -0.922 5.922 26 Si 0.914 3.086 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.128 3.872 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.104 0.896 47 H 0.032 0.968 48 H 0.253 0.747 49 H 0.032 0.968 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 1.329 18.666 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.040 4.040 3 N -0.316 5.316 4 C 0.284 3.716 5 O -0.406 6.406 6 C 0.006 3.994 7 H 0.157 0.843 8 C -0.138 4.138 9 C -0.175 4.175 10 C 0.074 3.926 11 C -0.159 4.159 12 C -0.100 4.100 13 C -0.171 4.171 14 C -0.034 4.034 15 C -0.174 4.174 16 O -0.189 6.189 17 C 0.023 3.977 18 H 0.116 0.884 19 C -0.198 4.198 20 C 0.015 3.985 21 N -0.329 5.329 22 C -0.352 4.352 23 H 0.094 0.906 24 C -0.204 4.204 25 N -0.570 5.570 26 Si 0.744 3.256 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.001 3.999 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.122 0.878 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.050 0.950 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.972 1.920 18.563 18.897 hybrid contribution 0.310 -0.683 -0.809 1.103 sum 3.282 1.237 17.754 18.097 Atomic orbital electron populations 1.22458 0.95738 1.02663 1.02674 1.22094 0.94917 0.82233 1.04790 1.47893 1.64336 1.14292 1.05123 1.20716 0.78897 0.86569 0.85396 1.90700 1.43602 1.19374 1.86960 1.23381 1.02453 0.88382 0.85179 0.84270 1.21859 0.93866 0.97132 1.00945 1.20514 0.96097 0.96226 1.04707 1.19533 0.84503 0.93267 0.95280 1.20228 0.93447 0.99555 1.02711 1.20826 0.94172 0.96313 0.98697 1.20899 1.00054 0.95256 1.00905 1.19103 0.91588 0.96637 0.96052 1.20819 1.01324 0.93518 1.01719 1.86903 1.25742 1.61976 1.44264 1.22151 0.97173 0.96406 0.81966 0.88399 1.23523 0.95823 1.02156 0.98278 1.22373 0.86058 0.89217 1.00888 1.44524 1.01506 1.49145 1.37707 1.19021 0.91469 1.16129 1.08552 0.90612 1.24753 0.95499 1.00347 0.99795 1.69775 1.01793 1.44338 1.41092 0.86171 0.77735 0.80358 0.81328 1.21245 1.21593 1.21201 1.21621 0.93476 0.93365 0.91409 0.91412 0.93583 0.90107 0.86788 0.91060 0.87939 0.87944 0.85516 0.85223 0.85570 0.90673 0.91297 0.91396 0.91635 0.91091 0.87782 0.95017 0.93676 0.94986 0.95610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 9.01 37.16 0.33 -1.97 16 2 C 0.08 1.18 4.72 -4.04 -0.02 1.16 16 3 N -0.58 -9.41 2.45 -164.03 -0.40 -9.82 16 4 C 0.50 8.27 6.95 -10.99 -0.08 8.19 16 5 O -0.53 -10.78 15.84 -13.49 -0.21 -11.00 16 6 C 0.07 0.87 3.24 -26.98 -0.09 0.79 16 7 H 0.14 1.47 6.74 -51.93 -0.35 1.12 16 8 C -0.10 -1.15 4.90 -26.52 -0.13 -1.28 16 9 C -0.17 -2.28 6.06 -104.10 -0.63 -2.91 16 10 C 0.12 1.73 6.84 -38.95 -0.27 1.46 16 11 C -0.14 -1.78 10.06 -39.30 -0.40 -2.18 16 12 C -0.08 -0.87 10.01 -39.68 -0.40 -1.26 16 13 C -0.15 -1.60 9.73 -39.52 -0.38 -1.99 16 14 C -0.03 -0.39 5.87 -104.76 -0.61 -1.00 16 15 C -0.12 -1.07 9.91 36.01 0.36 -0.71 16 16 O -0.28 -4.21 10.43 -39.18 -0.41 -4.62 16 17 C 0.13 2.31 3.56 -66.09 -0.24 2.08 16 18 H 0.10 1.85 7.01 -51.93 -0.36 1.49 16 19 C -0.16 -2.92 6.12 -24.32 -0.15 -3.07 16 20 C 0.14 3.07 4.65 -2.27 -0.01 3.06 16 21 N -0.60 -14.42 2.97 -169.76 -0.50 -14.93 16 22 C -0.22 -5.93 10.27 -15.06 -0.15 -6.08 16 23 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 24 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 25 N -0.92 -25.34 10.09 55.49 0.56 -24.78 16 26 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 30 C 0.13 2.65 6.25 -3.06 -0.02 2.63 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.51 6.90 -51.93 -0.36 0.15 16 33 H 0.08 1.21 4.34 -51.93 -0.23 0.98 16 34 H 0.11 2.05 5.18 -51.93 -0.27 1.78 16 35 H 0.07 0.83 4.46 -51.93 -0.23 0.60 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.19 6.28 -51.93 -0.33 0.86 16 38 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 43 H 0.07 0.57 7.78 -51.93 -0.40 0.17 16 44 H 0.07 1.10 6.46 -51.93 -0.34 0.76 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.10 2.68 5.87 -51.93 -0.30 2.38 16 47 H 0.03 0.69 4.04 -51.93 -0.21 0.48 16 48 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 49 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -31.58 378.51 -10.41 -41.98 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.14 Total: 4.59 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.97 Total: -3.41 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.35 Total: -49.52 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.62 Total: -15.62 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.58 -10.41 -41.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034017750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.758 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds