Wall clock time and date at job start Wed Apr 1 2020 02:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46956 * 2 1 4 4 C 1.34770 * 120.00105 * 264.23157 * 3 2 1 5 5 O 1.21285 * 120.00264 * 184.49133 * 4 3 2 6 6 C 1.50701 * 119.99840 * 4.49038 * 4 3 2 7 7 H 1.08995 * 109.63472 * 45.56690 * 6 4 3 8 8 C 1.52967 * 109.63368 * 285.16043 * 6 4 3 9 9 C 1.50846 * 109.70829 * 191.27804 * 8 6 4 10 10 C 1.38597 * 118.69608 * 196.62121 * 9 8 6 11 11 C 1.38069 * 120.27517 * 180.28188 * 10 9 8 12 12 C 1.38265 * 119.86024 * 359.96984 * 11 10 9 13 13 C 1.38057 * 119.89916 * 359.90427 * 12 11 10 14 14 C 1.37905 * 121.41789 * 16.69988 * 9 8 6 15 15 C 1.50661 * 121.50248 * 359.62648 * 14 9 8 16 16 O 1.42718 * 110.26765 * 16.09861 * 15 14 9 17 17 C 1.46504 * 120.00096 * 84.23119 * 3 2 1 18 18 H 1.09006 * 110.63954 * 356.86096 * 17 3 2 19 19 C 1.55159 * 110.72141 * 119.99834 * 17 3 2 20 20 C 1.54912 * 101.58299 * 153.86621 * 19 17 3 21 21 N 1.47422 * 104.92620 * 322.93756 * 20 19 17 22 22 C 1.36935 * 125.64905 * 204.15365 * 21 20 19 23 23 H 1.07995 * 120.00507 * 180.02562 * 22 21 20 24 24 C 1.38818 * 119.99847 * 0.02562 * 22 21 20 25 25 N 1.31615 * 119.99960 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00250 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46861 * 60.00194 * 26 24 22 28 28 H 1.48494 * 109.47500 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47182 * 300.00981 * 26 24 22 30 30 C 1.47295 * 108.55940 * 24.15505 * 21 20 19 31 31 H 1.09007 * 109.46868 * 60.00223 * 1 2 3 32 32 H 1.09006 * 109.46799 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47686 * 299.99844 * 1 2 3 34 34 H 1.08994 * 109.47686 * 240.00156 * 2 1 3 35 35 H 1.09007 * 109.46868 * 119.99777 * 2 1 3 36 36 H 1.08998 * 109.42897 * 311.16275 * 8 6 4 37 37 H 1.09004 * 109.42068 * 70.98911 * 8 6 4 38 38 H 1.08000 * 119.86058 * 0.24868 * 10 9 8 39 39 H 1.07998 * 120.06826 * 179.97438 * 11 10 9 40 40 H 1.07998 * 120.04635 * 179.97438 * 12 11 10 41 41 H 1.07990 * 119.84753 * 180.02562 * 13 12 11 42 42 H 1.08995 * 109.33597 * 255.85570 * 15 14 9 43 43 H 1.08996 * 109.33539 * 136.34484 * 15 14 9 44 44 H 1.09008 * 111.00147 * 35.79086 * 19 17 3 45 45 H 1.08999 * 111.00526 * 271.94610 * 19 17 3 46 46 H 1.08996 * 110.36219 * 81.82921 * 20 19 17 47 47 H 1.08995 * 110.36333 * 204.04611 * 20 19 17 48 48 H 0.96998 * 120.00100 * 179.97438 * 25 24 22 49 49 H 1.08996 * 109.85668 * 239.49678 * 30 21 20 50 50 H 1.09002 * 109.99903 * 118.43219 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3535 1.9775 -1.1612 5 8 2.8341 3.0910 -1.1546 6 6 2.1311 1.2605 -2.4680 7 1 1.1378 0.8119 -2.4752 8 6 3.1891 0.1696 -2.6423 9 6 3.1455 -0.3605 -4.0538 10 6 3.7625 -1.5705 -4.3297 11 6 3.7475 -2.0832 -5.6115 12 6 3.1139 -1.3869 -6.6241 13 6 2.4968 -0.1828 -6.3496 14 6 2.5103 0.3326 -5.0627 15 6 1.8225 1.6476 -4.8024 16 8 2.2478 2.1889 -3.5522 17 6 2.1422 2.1144 1.2623 18 1 1.7800 1.5106 2.0945 19 6 3.6114 2.5526 1.5007 20 6 3.4221 3.7976 2.4028 21 7 2.2126 4.4621 1.8842 22 6 1.9085 5.7897 2.0258 23 1 0.9931 6.1815 1.6077 24 6 2.7768 6.6319 2.7067 25 7 3.8927 6.1544 3.2158 26 14 2.3623 8.4431 2.8993 27 1 1.0788 8.5817 3.6332 28 1 3.4434 9.1202 3.6595 29 1 2.2353 9.0672 1.5578 30 6 1.3880 3.4587 1.1893 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 4.1764 0.5872 -2.4450 37 1 2.9927 -0.6412 -1.9407 38 1 4.2575 -2.1143 -3.5387 39 1 4.2297 -3.0262 -5.8228 40 1 3.1007 -1.7850 -7.6280 41 1 2.0018 0.3601 -7.1410 42 1 0.7439 1.4926 -4.7803 43 1 2.0679 2.3475 -5.6010 44 1 4.0964 2.8204 0.5619 45 1 4.1716 1.7752 2.0202 46 1 3.2741 3.4958 3.4397 47 1 4.2837 4.4601 2.3206 48 1 4.4996 6.7430 3.6913 49 1 1.2497 3.7500 0.1481 50 1 0.4192 3.3675 1.6804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034036287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:28 Heat of formation + Delta-G solvation = -5.237410 kcal Electronic energy + Delta-G solvation = -31270.041168 eV Core-core repulsion = 27263.704666 eV Total energy + Delta-G solvation = -4006.336502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.93955 -39.71059 -37.75491 -36.46091 -35.59059 -33.40223 -32.27584 -31.95468 -30.31088 -30.07709 -28.80145 -27.09725 -25.81530 -25.15941 -24.14237 -23.12958 -22.58859 -21.13025 -20.40335 -20.01847 -18.70443 -17.50725 -17.13229 -16.70839 -16.34398 -16.21883 -15.59218 -15.11131 -14.79238 -14.68399 -14.49960 -14.31057 -14.03172 -13.84806 -13.70685 -13.47520 -13.33108 -13.14367 -12.95590 -12.53220 -12.27895 -12.17024 -12.01950 -11.87007 -11.69204 -11.40232 -11.35967 -11.24512 -10.99743 -10.88521 -10.75091 -10.68676 -10.35367 -10.02708 -9.92065 -9.71116 -9.44076 -9.08465 -8.99535 -8.88590 -8.50691 -8.28061 -6.65378 -5.49724 -2.89699 0.99288 1.03865 2.75441 2.90354 3.39255 3.50821 3.54420 3.56241 3.81346 4.23440 4.34645 4.43788 4.61215 4.63031 4.68075 4.74670 4.82711 4.82802 5.03373 5.09003 5.09347 5.13390 5.26411 5.38873 5.40072 5.47656 5.54857 5.56451 5.62899 5.66538 5.67587 5.68873 5.79954 5.85447 5.94325 6.08324 6.09281 6.17619 6.25322 6.33941 6.61245 6.63755 6.65747 6.71286 6.84216 6.88539 7.26375 7.58840 7.69982 7.77357 8.00850 8.49089 8.53589 9.37422 9.98438 10.64022 11.54348 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.002730 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.815634 B =10254.522756 C =10865.464597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.093 3.907 3 N -0.604 5.604 4 C 0.512 3.488 5 O -0.479 6.479 6 C 0.074 3.926 7 H 0.083 0.917 8 C -0.109 4.109 9 C -0.069 4.069 10 C -0.116 4.116 11 C -0.118 4.118 12 C -0.123 4.123 13 C -0.111 4.111 14 C -0.118 4.118 15 C 0.098 3.902 16 O -0.341 6.341 17 C 0.137 3.863 18 H 0.089 0.911 19 C -0.155 4.155 20 C 0.157 3.843 21 N -0.595 5.595 22 C -0.212 4.212 23 H 0.074 0.926 24 C -0.014 4.014 25 N -0.925 5.925 26 Si 0.914 3.086 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.132 3.868 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.009 0.991 47 H 0.107 0.893 48 H 0.251 0.749 49 H 0.039 0.961 50 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 -22.371 -16.389 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.030 4.030 3 N -0.339 5.339 4 C 0.297 3.703 5 O -0.350 6.350 6 C 0.012 3.988 7 H 0.101 0.899 8 C -0.146 4.146 9 C -0.069 4.069 10 C -0.134 4.134 11 C -0.136 4.136 12 C -0.141 4.141 13 C -0.129 4.129 14 C -0.118 4.118 15 C 0.021 3.979 16 O -0.258 6.258 17 C 0.035 3.965 18 H 0.107 0.893 19 C -0.195 4.195 20 C 0.032 3.968 21 N -0.321 5.321 22 C -0.341 4.341 23 H 0.092 0.908 24 C -0.209 4.209 25 N -0.574 5.574 26 Si 0.745 3.255 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.212 1.212 30 C 0.005 3.995 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.085 0.915 43 H 0.128 0.872 44 H 0.097 0.903 45 H 0.071 0.929 46 H 0.027 0.973 47 H 0.124 0.876 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -3.560 -21.337 -16.265 27.065 hybrid contribution -0.422 0.390 -0.015 0.574 sum -3.982 -20.947 -16.280 26.827 Atomic orbital electron populations 1.22244 0.95916 1.01985 1.03021 1.21829 0.94704 0.83123 1.03365 1.47923 1.65911 1.13618 1.06496 1.19896 0.79609 0.86711 0.84070 1.90862 1.39739 1.18219 1.86208 1.22000 0.99123 0.89981 0.87664 0.89936 1.21234 1.01253 0.98162 0.93967 1.19469 0.97988 0.94701 0.94718 1.21076 0.99627 0.95430 0.97234 1.21120 0.99516 0.99969 0.92999 1.21095 0.98396 0.95275 0.99290 1.20983 0.99851 0.96373 0.95671 1.20312 0.99986 0.97616 0.93879 1.21532 0.97301 0.91991 0.87063 1.88265 1.86404 1.36332 1.14834 1.22191 0.98279 0.93061 0.82987 0.89263 1.23435 0.94273 0.99586 1.02185 1.21839 0.93060 0.90118 0.91767 1.44327 1.20314 1.04199 1.63297 1.19007 1.03741 0.82713 1.28609 0.90770 1.24749 0.97094 0.98199 1.00844 1.69781 1.11968 1.33509 1.42159 0.86153 0.76962 0.84836 0.77576 1.21377 1.21656 1.21234 1.21525 0.92924 0.88051 0.97020 0.92558 0.91666 0.91689 0.90077 0.90139 0.88717 0.88533 0.85765 0.85912 0.85929 0.85766 0.91507 0.87153 0.90284 0.92879 0.97299 0.87552 0.93870 0.94339 0.96659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.17 37.16 0.38 -1.17 16 2 C 0.09 0.90 5.71 -4.04 -0.02 0.88 16 3 N -0.60 -8.96 2.54 -164.03 -0.42 -9.37 16 4 C 0.51 8.74 6.06 -10.99 -0.07 8.67 16 5 O -0.48 -10.94 12.94 -13.82 -0.18 -11.12 16 6 C 0.07 0.97 2.19 -27.90 -0.06 0.91 16 7 H 0.08 0.90 6.81 -51.93 -0.35 0.55 16 8 C -0.11 -1.17 5.03 -27.83 -0.14 -1.31 16 9 C -0.07 -0.70 5.78 -104.54 -0.60 -1.31 16 10 C -0.12 -1.00 9.67 -39.51 -0.38 -1.38 16 11 C -0.12 -0.91 10.05 -39.63 -0.40 -1.31 16 12 C -0.12 -0.93 10.05 -39.64 -0.40 -1.33 16 13 C -0.11 -0.93 9.67 -39.50 -0.38 -1.31 16 14 C -0.12 -1.19 5.80 -104.62 -0.61 -1.80 16 15 C 0.10 1.04 6.66 35.99 0.24 1.28 16 16 O -0.34 -5.16 10.03 -54.61 -0.55 -5.71 16 17 C 0.14 2.51 3.44 -66.10 -0.23 2.29 16 18 H 0.09 1.43 7.96 -51.93 -0.41 1.02 16 19 C -0.16 -3.24 6.43 -24.58 -0.16 -3.40 16 20 C 0.16 4.09 5.89 -2.53 -0.01 4.08 16 21 N -0.60 -16.51 3.40 -169.86 -0.58 -17.08 16 22 C -0.21 -6.36 10.28 -15.06 -0.15 -6.52 16 23 H 0.07 2.16 7.83 -52.49 -0.41 1.75 16 24 C -0.01 -0.42 5.49 -17.43 -0.10 -0.52 16 25 N -0.92 -28.42 10.09 55.49 0.56 -27.86 16 26 Si 0.91 23.39 29.55 -169.99 -5.02 18.36 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 C 0.13 3.03 6.48 -2.92 -0.02 3.01 16 31 H 0.06 0.53 7.43 -51.93 -0.39 0.14 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.63 4.01 -51.93 -0.21 0.42 16 35 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 36 H 0.09 1.16 8.10 -51.93 -0.42 0.74 16 37 H 0.10 0.78 5.57 -51.93 -0.29 0.49 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.82 6.09 -51.92 -0.32 1.50 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.11 3.14 5.87 -51.93 -0.30 2.84 16 48 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.04 0.96 5.98 -51.93 -0.31 0.65 16 50 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 386.01 15.07 5.82 5.82 Total: -1.00 -36.72 386.01 -11.10 -47.82 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.62 Total: -0.64 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -3.11 Total: -0.22 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.44 Total: -54.32 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.73 Total: -16.83 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.72 -11.10 -47.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034036287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.584 kcal (2) G-P(sol) polarization free energy of solvation -36.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds