Wall clock time and date at job start Wed Apr 1 2020 02:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46956 * 2 1 4 4 C 1.34770 * 120.00105 * 264.23157 * 3 2 1 5 5 O 1.21285 * 120.00264 * 184.49133 * 4 3 2 6 6 C 1.50701 * 119.99840 * 4.49038 * 4 3 2 7 7 H 1.08995 * 109.63472 * 45.56690 * 6 4 3 8 8 C 1.52967 * 109.63368 * 285.16043 * 6 4 3 9 9 C 1.50846 * 109.70829 * 191.27804 * 8 6 4 10 10 C 1.38597 * 118.69608 * 196.62121 * 9 8 6 11 11 C 1.38069 * 120.27517 * 180.28188 * 10 9 8 12 12 C 1.38265 * 119.86024 * 359.96984 * 11 10 9 13 13 C 1.38057 * 119.89916 * 359.90427 * 12 11 10 14 14 C 1.37905 * 121.41789 * 16.69988 * 9 8 6 15 15 C 1.50661 * 121.50248 * 359.62648 * 14 9 8 16 16 O 1.42718 * 110.26765 * 16.09861 * 15 14 9 17 17 C 1.46504 * 120.00096 * 84.23119 * 3 2 1 18 18 H 1.09006 * 110.63954 * 356.86096 * 17 3 2 19 19 C 1.55159 * 110.72141 * 119.99834 * 17 3 2 20 20 C 1.54912 * 101.58299 * 153.86621 * 19 17 3 21 21 N 1.47422 * 104.92620 * 322.93756 * 20 19 17 22 22 C 1.36935 * 125.64905 * 204.15365 * 21 20 19 23 23 H 1.07995 * 120.00507 * 180.02562 * 22 21 20 24 24 C 1.38818 * 119.99847 * 0.02562 * 22 21 20 25 25 N 1.31615 * 119.99960 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00250 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46861 * 60.00194 * 26 24 22 28 28 H 1.48494 * 109.47500 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47182 * 300.00981 * 26 24 22 30 30 C 1.47295 * 108.55940 * 24.15505 * 21 20 19 31 31 H 1.09007 * 109.46868 * 60.00223 * 1 2 3 32 32 H 1.09006 * 109.46799 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47686 * 299.99844 * 1 2 3 34 34 H 1.08994 * 109.47686 * 240.00156 * 2 1 3 35 35 H 1.09007 * 109.46868 * 119.99777 * 2 1 3 36 36 H 1.08998 * 109.42897 * 311.16275 * 8 6 4 37 37 H 1.09004 * 109.42068 * 70.98911 * 8 6 4 38 38 H 1.08000 * 119.86058 * 0.24868 * 10 9 8 39 39 H 1.07998 * 120.06826 * 179.97438 * 11 10 9 40 40 H 1.07998 * 120.04635 * 179.97438 * 12 11 10 41 41 H 1.07990 * 119.84753 * 180.02562 * 13 12 11 42 42 H 1.08995 * 109.33597 * 255.85570 * 15 14 9 43 43 H 1.08996 * 109.33539 * 136.34484 * 15 14 9 44 44 H 1.09008 * 111.00147 * 35.79086 * 19 17 3 45 45 H 1.08999 * 111.00526 * 271.94610 * 19 17 3 46 46 H 1.08996 * 110.36219 * 81.82921 * 20 19 17 47 47 H 1.08995 * 110.36333 * 204.04611 * 20 19 17 48 48 H 0.96998 * 120.00100 * 179.97438 * 25 24 22 49 49 H 1.08996 * 109.85668 * 239.49678 * 30 21 20 50 50 H 1.09002 * 109.99903 * 118.43219 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3535 1.9775 -1.1612 5 8 2.8341 3.0910 -1.1546 6 6 2.1311 1.2605 -2.4680 7 1 1.1378 0.8119 -2.4752 8 6 3.1891 0.1696 -2.6423 9 6 3.1455 -0.3605 -4.0538 10 6 3.7625 -1.5705 -4.3297 11 6 3.7475 -2.0832 -5.6115 12 6 3.1139 -1.3869 -6.6241 13 6 2.4968 -0.1828 -6.3496 14 6 2.5103 0.3326 -5.0627 15 6 1.8225 1.6476 -4.8024 16 8 2.2478 2.1889 -3.5522 17 6 2.1422 2.1144 1.2623 18 1 1.7800 1.5106 2.0945 19 6 3.6114 2.5526 1.5007 20 6 3.4221 3.7976 2.4028 21 7 2.2126 4.4621 1.8842 22 6 1.9085 5.7897 2.0258 23 1 0.9931 6.1815 1.6077 24 6 2.7768 6.6319 2.7067 25 7 3.8927 6.1544 3.2158 26 14 2.3623 8.4431 2.8993 27 1 1.0788 8.5817 3.6332 28 1 3.4434 9.1202 3.6595 29 1 2.2353 9.0672 1.5578 30 6 1.3880 3.4587 1.1893 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 4.1764 0.5872 -2.4450 37 1 2.9927 -0.6412 -1.9407 38 1 4.2575 -2.1143 -3.5387 39 1 4.2297 -3.0262 -5.8228 40 1 3.1007 -1.7850 -7.6280 41 1 2.0018 0.3601 -7.1410 42 1 0.7439 1.4926 -4.7803 43 1 2.0679 2.3475 -5.6010 44 1 4.0964 2.8204 0.5619 45 1 4.1716 1.7752 2.0202 46 1 3.2741 3.4958 3.4397 47 1 4.2837 4.4601 2.3206 48 1 4.4996 6.7430 3.6913 49 1 1.2497 3.7500 0.1481 50 1 0.4192 3.3675 1.6804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034036287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:27 Heat of formation + Delta-G solvation = -27.815028 kcal Electronic energy + Delta-G solvation = -31271.020207 eV Core-core repulsion = 27263.704666 eV Total energy + Delta-G solvation = -4007.315541 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.96908 -40.76976 -38.84933 -38.01401 -36.89671 -34.60612 -33.88804 -32.66052 -31.69085 -31.01247 -30.49384 -28.74232 -26.82904 -26.42211 -25.69691 -23.99792 -23.27520 -22.50313 -22.10826 -21.18325 -19.98953 -18.97447 -18.37022 -18.15229 -17.23447 -17.14114 -16.78093 -16.55961 -16.24077 -15.85274 -15.70217 -15.48375 -15.24047 -14.94257 -14.84523 -14.53168 -14.31177 -14.10891 -14.02326 -13.85657 -13.72206 -13.49490 -13.23587 -13.01391 -12.89943 -12.82593 -12.69931 -12.57990 -12.29237 -12.19796 -12.08356 -12.06273 -11.98094 -11.84721 -11.74306 -11.37991 -10.85137 -10.74020 -10.39700 -9.69627 -9.63330 -9.54803 -8.86321 -7.76866 -5.20429 0.35868 0.43636 1.41553 1.47270 1.51487 1.53585 1.71621 2.48929 2.76450 2.86317 3.28150 3.32920 3.58905 3.65451 3.74663 3.82863 3.89251 3.90895 3.96486 4.08508 4.09668 4.24554 4.25501 4.34818 4.39718 4.42194 4.45408 4.59023 4.65492 4.71354 4.72171 4.74856 4.79060 4.85738 4.93998 5.01956 5.04648 5.07748 5.12004 5.12779 5.40055 5.41325 5.49153 5.58868 5.60362 5.63762 5.74560 5.80309 5.97203 6.07513 6.30959 6.45020 7.10635 7.23446 7.78193 8.42660 9.24743 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.002730 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.815634 B =10254.522756 C =10865.464597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.086 3.914 3 N -0.595 5.595 4 C 0.506 3.494 5 O -0.551 6.551 6 C 0.082 3.918 7 H 0.108 0.892 8 C -0.100 4.100 9 C -0.089 4.089 10 C -0.121 4.121 11 C -0.121 4.121 12 C -0.124 4.124 13 C -0.117 4.117 14 C -0.135 4.135 15 C 0.094 3.906 16 O -0.384 6.384 17 C 0.155 3.845 18 H 0.125 0.875 19 C -0.140 4.140 20 C 0.160 3.840 21 N -0.619 5.619 22 C -0.238 4.238 23 H 0.072 0.928 24 C -0.069 4.069 25 N -0.949 5.949 26 Si 0.983 3.017 27 H -0.273 1.273 28 H -0.288 1.288 29 H -0.284 1.284 30 C 0.130 3.870 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.052 0.948 45 H 0.089 0.911 46 H -0.001 1.001 47 H 0.064 0.936 48 H 0.247 0.753 49 H 0.013 0.987 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 -25.846 -17.461 31.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.035 4.035 3 N -0.329 5.329 4 C 0.294 3.706 5 O -0.427 6.427 6 C 0.021 3.979 7 H 0.126 0.874 8 C -0.136 4.136 9 C -0.089 4.089 10 C -0.138 4.138 11 C -0.138 4.138 12 C -0.142 4.142 13 C -0.135 4.135 14 C -0.136 4.136 15 C 0.018 3.982 16 O -0.302 6.302 17 C 0.051 3.949 18 H 0.143 0.857 19 C -0.179 4.179 20 C 0.035 3.965 21 N -0.345 5.345 22 C -0.367 4.367 23 H 0.089 0.911 24 C -0.261 4.261 25 N -0.599 5.599 26 Si 0.810 3.190 27 H -0.199 1.199 28 H -0.214 1.214 29 H -0.210 1.210 30 C 0.003 3.997 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.089 0.911 37 H 0.144 0.856 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.159 0.841 42 H 0.100 0.900 43 H 0.134 0.866 44 H 0.071 0.929 45 H 0.108 0.892 46 H 0.017 0.983 47 H 0.082 0.918 48 H 0.057 0.943 49 H 0.031 0.969 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.637 -24.893 -17.352 30.696 hybrid contribution -0.116 1.431 0.230 1.454 sum -4.754 -23.462 -17.122 29.432 Atomic orbital electron populations 1.22230 0.94997 1.03745 1.01931 1.22258 0.95403 0.80001 1.05824 1.47962 1.64996 1.15313 1.04643 1.20725 0.78055 0.86009 0.85849 1.90831 1.43076 1.21458 1.87348 1.21997 1.01174 0.89613 0.85150 0.87442 1.21161 0.99052 0.97874 0.95561 1.19522 0.99387 0.95721 0.94244 1.21310 0.99279 0.94877 0.98370 1.21481 0.99004 1.00791 0.92565 1.21459 0.97434 0.94788 1.00542 1.21229 0.99968 0.96937 0.95365 1.20368 1.00907 0.97401 0.94881 1.21725 0.98344 0.92713 0.85448 1.88205 1.87090 1.38300 1.16645 1.21925 0.95385 0.91761 0.85783 0.85710 1.23193 0.96518 0.98202 1.00009 1.21606 0.91115 0.91440 0.92371 1.44632 1.21666 1.04513 1.63676 1.19356 1.03977 0.84487 1.28903 0.91052 1.25654 0.97054 1.02677 1.00759 1.70056 1.12653 1.34687 1.42485 0.85096 0.77179 0.79233 0.77481 1.19870 1.21364 1.21006 1.21644 0.93429 0.89662 0.94932 0.93425 0.88424 0.93093 0.87704 0.87609 0.91058 0.85601 0.84012 0.83497 0.83549 0.84062 0.89953 0.86573 0.92917 0.89221 0.98302 0.91772 0.94314 0.96858 0.95873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.17 71.98 0.73 -1.73 16 2 C 0.09 1.35 5.71 86.38 0.49 1.84 16 3 N -0.60 -16.89 2.54 -791.26 -2.01 -18.90 16 4 C 0.51 17.54 6.06 87.66 0.53 18.07 16 5 O -0.55 -26.71 12.94 15.48 0.20 -26.51 16 6 C 0.08 2.11 2.19 29.84 0.07 2.17 16 7 H 0.11 2.17 6.81 -2.39 -0.02 2.15 16 8 C -0.10 -2.00 5.03 29.88 0.15 -1.85 16 9 C -0.09 -1.67 5.78 -19.81 -0.11 -1.78 16 10 C -0.12 -1.75 9.67 22.32 0.22 -1.53 16 11 C -0.12 -1.46 10.05 22.24 0.22 -1.24 16 12 C -0.12 -1.51 10.05 22.23 0.22 -1.29 16 13 C -0.12 -1.71 9.67 22.32 0.22 -1.49 16 14 C -0.14 -2.57 5.80 -19.86 -0.12 -2.69 16 15 C 0.09 1.96 6.66 71.22 0.47 2.44 16 16 O -0.38 -11.98 10.03 -130.45 -1.31 -13.29 16 17 C 0.16 5.56 3.44 46.18 0.16 5.72 16 18 H 0.13 3.63 7.96 -2.38 -0.02 3.61 16 19 C -0.14 -5.89 6.43 31.99 0.21 -5.68 16 20 C 0.16 8.67 5.89 86.86 0.51 9.18 16 21 N -0.62 -35.76 3.40 -691.33 -2.35 -38.11 16 22 C -0.24 -14.87 10.28 84.04 0.86 -14.00 16 23 H 0.07 4.34 7.83 -2.91 -0.02 4.32 16 24 C -0.07 -4.27 5.49 84.86 0.47 -3.81 16 25 N -0.95 -60.67 10.09 21.65 0.22 -60.45 16 26 Si 0.98 49.41 29.55 68.60 2.03 51.43 16 27 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 28 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 29 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 30 C 0.13 6.12 6.48 86.67 0.56 6.68 16 31 H 0.05 0.77 7.43 -2.38 -0.02 0.76 16 32 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 1.18 4.01 -2.39 -0.01 1.17 16 35 H 0.11 1.24 8.09 -2.38 -0.02 1.22 16 36 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 37 H 0.13 1.63 5.57 -2.39 -0.01 1.61 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 40 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 41 H 0.14 1.45 8.06 -2.92 -0.02 1.43 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.05 2.53 6.09 -2.38 -0.01 2.51 16 45 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 46 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.06 4.02 5.87 -2.39 -0.01 4.01 16 48 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 49 H 0.01 0.70 5.98 -2.39 -0.01 0.69 16 50 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -87.26 386.01 3.58 -83.69 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.94 Total: 13.13 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 5.86 Total: 9.02 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -4.14 Total: -117.47 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -1.11 Total: -39.80 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.03 Total: 51.43 kcal Total: -87.26 3.58 -83.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034036287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.871 kcal (2) G-P(sol) polarization free energy of solvation -87.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds