Wall clock time and date at job start Wed Apr 1 2020 02:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46843 * 2 1 4 4 C 1.34774 * 120.00128 * 266.91458 * 3 2 1 5 5 O 1.21275 * 120.00070 * 175.17262 * 4 3 2 6 6 C 1.50701 * 119.99914 * 355.17347 * 4 3 2 7 7 H 1.08999 * 110.66877 * 309.33577 * 6 4 3 8 8 C 1.54709 * 110.74867 * 72.55134 * 6 4 3 9 9 C 1.51647 * 101.92565 * 143.60689 * 8 6 4 10 10 C 1.37736 * 132.17134 * 164.59419 * 9 8 6 11 11 C 1.38351 * 119.97896 * 180.36443 * 10 9 8 12 12 C 1.38287 * 119.76518 * 359.97438 * 11 10 9 13 13 C 1.37932 * 120.35056 * 359.85769 * 12 11 10 14 14 C 1.50697 * 119.87817 * 179.97438 * 13 12 11 15 15 C 1.38882 * 107.03936 * 344.61437 * 9 8 6 16 16 O 1.36134 * 111.23766 * 358.93047 * 15 9 8 17 17 C 1.46499 * 119.99833 * 86.91861 * 3 2 1 18 18 H 1.08999 * 110.88784 * 10.38273 * 17 3 2 19 19 C 1.55157 * 111.00563 * 246.50145 * 17 3 2 20 20 C 1.54321 * 102.94381 * 277.42835 * 19 17 3 21 21 N 1.47025 * 107.27190 * 337.80793 * 20 19 17 22 22 C 1.36930 * 125.64945 * 178.97663 * 21 20 19 23 23 H 1.07997 * 119.99837 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00014 * 359.97438 * 22 21 20 25 25 N 1.31616 * 120.00225 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00198 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47082 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47215 * 119.99414 * 26 24 22 29 29 H 1.48501 * 109.47094 * 239.99653 * 26 24 22 30 30 C 1.47527 * 108.71360 * 358.93790 * 21 20 19 31 31 H 1.08996 * 109.47153 * 293.90094 * 1 2 3 32 32 H 1.08998 * 109.46918 * 173.89968 * 1 2 3 33 33 H 1.09000 * 109.46930 * 53.90518 * 1 2 3 34 34 H 1.08997 * 109.47050 * 119.99990 * 2 1 3 35 35 H 1.09000 * 109.47341 * 240.00233 * 2 1 3 36 36 H 1.09005 * 110.93914 * 261.76020 * 8 6 4 37 37 H 1.08992 * 110.94035 * 25.44656 * 8 6 4 38 38 H 1.08001 * 120.01487 * 0.33874 * 10 9 8 39 39 H 1.08004 * 120.12028 * 179.97438 * 11 10 9 40 40 H 1.08000 * 119.82349 * 179.83164 * 12 11 10 41 41 H 1.09004 * 109.46947 * 90.00223 * 14 13 12 42 42 H 1.08997 * 109.47429 * 210.00140 * 14 13 12 43 43 H 1.09004 * 109.47499 * 330.00102 * 14 13 12 44 44 H 1.09001 * 110.71668 * 35.79351 * 19 17 3 45 45 H 1.09005 * 110.72040 * 159.06254 * 19 17 3 46 46 H 1.09000 * 109.87967 * 97.22019 * 20 19 17 47 47 H 1.08999 * 109.88178 * 218.23109 * 20 19 17 48 48 H 0.96993 * 120.00507 * 180.02562 * 25 24 22 49 49 H 1.08998 * 110.37558 * 265.31276 * 30 21 20 50 50 H 1.09000 * 110.40997 * 142.95078 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3022 1.9957 -1.1655 5 8 2.6222 3.1655 -1.1721 6 6 2.2219 1.2292 -2.4605 7 1 2.7817 0.2965 -2.3908 8 6 0.7485 0.9565 -2.8455 9 6 0.7895 1.0893 -4.3556 10 6 -0.0944 0.7100 -5.3415 11 6 0.2058 0.9534 -6.6700 12 6 1.3940 1.5780 -7.0021 13 6 2.2790 1.9617 -6.0161 14 6 3.5711 2.6412 -6.3900 15 6 1.9829 1.7231 -4.6761 16 8 2.6942 2.0305 -3.5568 17 6 2.1982 2.0946 1.2669 18 1 2.1041 1.4138 2.1129 19 6 1.1972 3.2739 1.3881 20 6 1.8897 4.3986 0.5900 21 7 3.3251 4.0831 0.5469 22 6 4.2866 4.8249 -0.0857 23 1 5.3184 4.5073 -0.0587 24 6 3.9350 5.9852 -0.7618 25 7 2.6774 6.3720 -0.7953 26 14 5.2465 6.9968 -1.6255 27 1 6.5712 6.3517 -1.4401 28 1 4.9339 7.0788 -3.0749 29 1 5.2772 8.3644 -1.0475 30 6 3.5583 2.8355 1.2989 31 1 -0.3633 0.4163 0.9395 32 1 -0.3633 -1.0218 -0.1092 33 1 -0.3633 0.6054 -0.8304 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 0.4486 -0.0493 -2.5510 37 1 0.0866 1.7030 -2.4066 38 1 -1.0213 0.2224 -5.0778 39 1 -0.4854 0.6566 -7.4450 40 1 1.6305 1.7660 -8.0389 41 1 3.4188 3.7201 -6.4200 42 1 4.3346 2.4025 -5.6497 43 1 3.8944 2.2925 -7.3708 44 1 0.2393 3.0145 0.9372 45 1 1.0678 3.5643 2.4308 46 1 1.4879 4.4360 -0.4225 47 1 1.7329 5.3561 1.0865 48 1 2.4317 7.1825 -1.2680 49 1 3.8441 3.0596 2.3265 50 1 4.3279 2.2365 0.8121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034057842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:56 Heat of formation + Delta-G solvation = 48.260619 kcal Electronic energy + Delta-G solvation = -32691.260456 eV Core-core repulsion = 28687.243803 eV Total energy + Delta-G solvation = -4004.016653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.27487 -39.60572 -37.49495 -35.81888 -35.41476 -33.42663 -32.16298 -30.93335 -30.01967 -29.54208 -28.79184 -26.98387 -26.69535 -24.52107 -23.89328 -23.13377 -22.05285 -20.90688 -20.68873 -19.81437 -18.08783 -17.52022 -16.89206 -16.64153 -16.43053 -15.75891 -15.29508 -14.86487 -14.58185 -14.35883 -14.02799 -13.80830 -13.64392 -13.53130 -13.31006 -13.16132 -12.93493 -12.76050 -12.55380 -12.30167 -12.19774 -11.93240 -11.78305 -11.62083 -11.58486 -11.45045 -11.29628 -11.10988 -10.93579 -10.69438 -10.66501 -10.65919 -10.61088 -9.93214 -9.87132 -9.61127 -9.36179 -8.65471 -8.49697 -8.39024 -7.93335 -7.77682 -6.21625 -5.35203 -2.60909 1.31275 1.44024 2.97768 3.36890 3.58545 3.63279 3.65705 3.69747 3.83414 4.43064 4.58930 4.78238 4.82207 4.91380 4.93086 4.98805 5.16698 5.21905 5.24857 5.32520 5.40566 5.48460 5.51586 5.57849 5.62888 5.70529 5.75317 5.75449 5.78066 5.82916 5.83065 5.95148 5.96591 6.09507 6.21190 6.29279 6.32523 6.39673 6.43770 6.56212 6.57045 6.63285 6.66985 6.70437 6.80515 7.27042 7.36810 7.83545 7.96206 8.00542 8.20552 8.61586 9.16505 9.57158 10.19453 10.84370 11.77927 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009315 B = 0.005385 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.143555 B = 5198.780535 C = 7499.463094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.108 3.892 3 N -0.610 5.610 4 C 0.454 3.546 5 O -0.369 6.369 6 C 0.068 3.932 7 H 0.095 0.905 8 C -0.094 4.094 9 C -0.174 4.174 10 C -0.076 4.076 11 C -0.153 4.153 12 C -0.089 4.089 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.116 3.884 16 O -0.263 6.263 17 C 0.137 3.863 18 H 0.083 0.917 19 C -0.160 4.160 20 C 0.192 3.808 21 N -0.569 5.569 22 C -0.197 4.197 23 H 0.066 0.934 24 C -0.002 4.002 25 N -0.917 5.917 26 Si 0.898 3.102 27 H -0.284 1.284 28 H -0.295 1.295 29 H -0.296 1.296 30 C 0.127 3.873 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.027 0.973 48 H 0.243 0.757 49 H 0.023 0.977 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.181 -17.990 -5.162 20.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.016 4.016 3 N -0.350 5.350 4 C 0.235 3.765 5 O -0.231 6.231 6 C 0.008 3.992 7 H 0.112 0.888 8 C -0.131 4.131 9 C -0.175 4.175 10 C -0.094 4.094 11 C -0.171 4.171 12 C -0.107 4.107 13 C -0.104 4.104 14 C -0.167 4.167 15 C 0.070 3.930 16 O -0.175 6.175 17 C 0.033 3.967 18 H 0.101 0.899 19 C -0.199 4.199 20 C 0.068 3.932 21 N -0.294 5.294 22 C -0.326 4.326 23 H 0.084 0.916 24 C -0.198 4.198 25 N -0.566 5.566 26 Si 0.731 3.269 27 H -0.210 1.210 28 H -0.222 1.222 29 H -0.224 1.224 30 C 0.000 4.000 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.045 0.955 48 H 0.054 0.946 49 H 0.040 0.960 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.743 -16.896 -5.280 18.942 hybrid contribution 0.398 0.230 -0.482 0.666 sum -6.345 -16.665 -5.762 18.740 Atomic orbital electron populations 1.22439 0.96529 1.01663 1.03131 1.21470 0.94127 0.83688 1.02328 1.47673 1.68864 1.13105 1.05365 1.19990 0.83177 0.89470 0.83815 1.91557 1.36127 1.11686 1.83728 1.23253 0.94366 0.93627 0.87968 0.88796 1.21878 0.96296 1.03554 0.91419 1.20789 0.95967 1.05423 0.95347 1.20212 0.98229 0.99241 0.91699 1.20927 0.97838 1.02565 0.95763 1.20734 0.93555 0.98026 0.98359 1.19147 0.98753 1.03665 0.88885 1.20692 0.94027 1.00449 1.01525 1.19517 0.90499 0.94777 0.88214 1.87043 1.56858 1.58416 1.15168 1.22262 0.97608 0.92920 0.83903 0.89942 1.23381 0.98019 0.97979 1.00526 1.21145 0.83277 0.91351 0.97416 1.44208 1.03735 1.22743 1.58744 1.18805 0.87504 1.01401 1.24911 0.91566 1.24547 0.95759 0.98549 1.00927 1.69949 1.14624 1.24537 1.47509 0.86231 0.80969 0.80119 0.79612 1.20986 1.22207 1.22381 1.21827 0.93474 0.89401 0.95348 0.92199 0.92142 0.91849 0.90879 0.91242 0.88675 0.88701 0.86055 0.85750 0.85443 0.91057 0.91158 0.91774 0.92508 0.92177 0.91805 0.95473 0.94646 0.95962 0.94803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 9.46 37.16 0.35 -1.32 16 2 C 0.11 1.14 5.64 -4.04 -0.02 1.12 16 3 N -0.61 -9.58 2.56 -163.67 -0.42 -10.00 16 4 C 0.45 8.83 6.49 -10.99 -0.07 8.76 16 5 O -0.37 -9.44 8.48 -13.43 -0.11 -9.55 16 6 C 0.07 1.12 3.05 -26.98 -0.08 1.03 16 7 H 0.09 1.30 7.13 -51.93 -0.37 0.93 16 8 C -0.09 -1.27 4.47 -26.52 -0.12 -1.39 16 9 C -0.17 -2.53 6.27 -104.10 -0.65 -3.19 16 10 C -0.08 -0.91 10.03 -39.72 -0.40 -1.31 16 11 C -0.15 -1.71 10.07 -39.52 -0.40 -2.11 16 12 C -0.09 -1.08 9.66 -39.68 -0.38 -1.47 16 13 C -0.10 -1.56 5.90 -104.35 -0.62 -2.18 16 14 C -0.11 -1.55 9.98 36.00 0.36 -1.19 16 15 C 0.12 1.98 6.73 -38.95 -0.26 1.72 16 16 O -0.26 -5.27 10.27 -39.15 -0.40 -5.67 16 17 C 0.14 2.34 3.80 -65.78 -0.25 2.09 16 18 H 0.08 1.12 7.89 -51.93 -0.41 0.71 16 19 C -0.16 -3.05 6.53 -24.90 -0.16 -3.22 16 20 C 0.19 4.94 4.20 -3.06 -0.01 4.93 16 21 N -0.57 -15.13 1.77 -169.99 -0.30 -15.43 16 22 C -0.20 -5.88 8.98 -15.06 -0.14 -6.02 16 23 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 24 C 0.00 -0.07 5.48 -17.43 -0.10 -0.17 16 25 N -0.92 -29.02 10.31 55.49 0.57 -28.44 16 26 Si 0.90 24.17 29.55 -169.99 -5.02 19.15 16 27 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.29 -8.07 7.11 56.52 0.40 -7.67 16 29 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 30 C 0.13 2.71 6.29 -2.47 -0.02 2.69 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.66 5.25 -51.93 -0.27 0.39 16 34 H 0.07 0.66 7.96 -51.93 -0.41 0.24 16 35 H 0.07 0.65 5.69 -51.93 -0.30 0.36 16 36 H 0.09 0.95 6.60 -51.93 -0.34 0.61 16 37 H 0.09 1.41 7.16 -51.93 -0.37 1.04 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.07 8.01 -51.93 -0.42 0.66 16 43 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 1.88 5.46 -51.93 -0.28 1.59 16 47 H 0.03 0.79 7.50 -51.93 -0.39 0.40 16 48 H 0.24 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -36.49 381.31 -10.67 -47.16 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.76 Total: -1.75 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -2.97 Total: -1.22 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.15 Total: -53.87 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.52 Total: -15.22 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.02 Total: 19.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.49 -10.67 -47.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034057842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.419 kcal (2) G-P(sol) polarization free energy of solvation -36.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds