Wall clock time and date at job start Wed Apr 1 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46843 * 2 1 4 4 C 1.34774 * 120.00128 * 266.91458 * 3 2 1 5 5 O 1.21275 * 120.00070 * 175.17262 * 4 3 2 6 6 C 1.50701 * 119.99914 * 355.17347 * 4 3 2 7 7 H 1.08999 * 110.66877 * 309.33577 * 6 4 3 8 8 C 1.54709 * 110.74867 * 72.55134 * 6 4 3 9 9 C 1.51647 * 101.92565 * 143.60689 * 8 6 4 10 10 C 1.37736 * 132.17134 * 164.59419 * 9 8 6 11 11 C 1.38351 * 119.97896 * 180.36443 * 10 9 8 12 12 C 1.38287 * 119.76518 * 359.97438 * 11 10 9 13 13 C 1.37932 * 120.35056 * 359.85769 * 12 11 10 14 14 C 1.50697 * 119.87817 * 179.97438 * 13 12 11 15 15 C 1.38882 * 107.03936 * 344.61437 * 9 8 6 16 16 O 1.36134 * 111.23766 * 358.93047 * 15 9 8 17 17 C 1.46499 * 119.99833 * 86.91861 * 3 2 1 18 18 H 1.08999 * 110.88784 * 10.38273 * 17 3 2 19 19 C 1.55157 * 111.00563 * 246.50145 * 17 3 2 20 20 C 1.54321 * 102.94381 * 277.42835 * 19 17 3 21 21 N 1.47025 * 107.27190 * 337.80793 * 20 19 17 22 22 C 1.36930 * 125.64945 * 178.97663 * 21 20 19 23 23 H 1.07997 * 119.99837 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00014 * 359.97438 * 22 21 20 25 25 N 1.31616 * 120.00225 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00198 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47082 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47215 * 119.99414 * 26 24 22 29 29 H 1.48501 * 109.47094 * 239.99653 * 26 24 22 30 30 C 1.47527 * 108.71360 * 358.93790 * 21 20 19 31 31 H 1.08996 * 109.47153 * 293.90094 * 1 2 3 32 32 H 1.08998 * 109.46918 * 173.89968 * 1 2 3 33 33 H 1.09000 * 109.46930 * 53.90518 * 1 2 3 34 34 H 1.08997 * 109.47050 * 119.99990 * 2 1 3 35 35 H 1.09000 * 109.47341 * 240.00233 * 2 1 3 36 36 H 1.09005 * 110.93914 * 261.76020 * 8 6 4 37 37 H 1.08992 * 110.94035 * 25.44656 * 8 6 4 38 38 H 1.08001 * 120.01487 * 0.33874 * 10 9 8 39 39 H 1.08004 * 120.12028 * 179.97438 * 11 10 9 40 40 H 1.08000 * 119.82349 * 179.83164 * 12 11 10 41 41 H 1.09004 * 109.46947 * 90.00223 * 14 13 12 42 42 H 1.08997 * 109.47429 * 210.00140 * 14 13 12 43 43 H 1.09004 * 109.47499 * 330.00102 * 14 13 12 44 44 H 1.09001 * 110.71668 * 35.79351 * 19 17 3 45 45 H 1.09005 * 110.72040 * 159.06254 * 19 17 3 46 46 H 1.09000 * 109.87967 * 97.22019 * 20 19 17 47 47 H 1.08999 * 109.88178 * 218.23109 * 20 19 17 48 48 H 0.96993 * 120.00507 * 180.02562 * 25 24 22 49 49 H 1.08998 * 110.37558 * 265.31276 * 30 21 20 50 50 H 1.09000 * 110.40997 * 142.95078 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3022 1.9957 -1.1655 5 8 2.6222 3.1655 -1.1721 6 6 2.2219 1.2292 -2.4605 7 1 2.7817 0.2965 -2.3908 8 6 0.7485 0.9565 -2.8455 9 6 0.7895 1.0893 -4.3556 10 6 -0.0944 0.7100 -5.3415 11 6 0.2058 0.9534 -6.6700 12 6 1.3940 1.5780 -7.0021 13 6 2.2790 1.9617 -6.0161 14 6 3.5711 2.6412 -6.3900 15 6 1.9829 1.7231 -4.6761 16 8 2.6942 2.0305 -3.5568 17 6 2.1982 2.0946 1.2669 18 1 2.1041 1.4138 2.1129 19 6 1.1972 3.2739 1.3881 20 6 1.8897 4.3986 0.5900 21 7 3.3251 4.0831 0.5469 22 6 4.2866 4.8249 -0.0857 23 1 5.3184 4.5073 -0.0587 24 6 3.9350 5.9852 -0.7618 25 7 2.6774 6.3720 -0.7953 26 14 5.2465 6.9968 -1.6255 27 1 6.5712 6.3517 -1.4401 28 1 4.9339 7.0788 -3.0749 29 1 5.2772 8.3644 -1.0475 30 6 3.5583 2.8355 1.2989 31 1 -0.3633 0.4163 0.9395 32 1 -0.3633 -1.0218 -0.1092 33 1 -0.3633 0.6054 -0.8304 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 0.4486 -0.0493 -2.5510 37 1 0.0866 1.7030 -2.4066 38 1 -1.0213 0.2224 -5.0778 39 1 -0.4854 0.6566 -7.4450 40 1 1.6305 1.7660 -8.0389 41 1 3.4188 3.7201 -6.4200 42 1 4.3346 2.4025 -5.6497 43 1 3.8944 2.2925 -7.3708 44 1 0.2393 3.0145 0.9372 45 1 1.0678 3.5643 2.4308 46 1 1.4879 4.4360 -0.4225 47 1 1.7329 5.3561 1.0865 48 1 2.4317 7.1825 -1.2680 49 1 3.8441 3.0596 2.3265 50 1 4.3279 2.2365 0.8121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034057842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:55 Heat of formation + Delta-G solvation = 25.941212 kcal Electronic energy + Delta-G solvation = -32692.228299 eV Core-core repulsion = 28687.243803 eV Total energy + Delta-G solvation = -4004.984495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.46538 -41.01394 -38.67214 -37.48358 -36.75316 -34.61092 -34.04589 -32.08076 -31.33927 -30.85729 -30.41205 -28.64822 -27.74973 -26.42456 -25.32143 -24.07534 -23.10645 -22.28166 -21.81454 -21.78128 -19.49737 -18.84159 -18.56993 -17.96856 -17.73603 -17.00348 -16.75971 -16.38721 -16.13036 -15.89853 -15.61326 -15.01136 -14.97441 -14.80048 -14.39706 -14.30303 -14.06809 -13.86637 -13.73454 -13.69110 -13.55394 -13.43644 -13.27286 -13.18620 -12.89482 -12.76284 -12.65776 -12.57214 -12.35909 -12.19531 -12.16119 -11.98368 -11.88365 -11.71766 -11.66092 -11.46956 -11.33478 -10.57200 -10.00541 -9.65484 -9.39048 -9.05515 -8.30463 -7.65959 -4.89030 0.31422 0.40330 1.35926 1.40018 1.47109 1.75599 2.00166 2.56666 2.59322 2.73820 3.32891 3.46227 3.53090 3.75921 3.83931 3.84661 3.97009 4.01979 4.06473 4.20196 4.23338 4.29960 4.37646 4.39377 4.51716 4.53549 4.61604 4.65753 4.66228 4.69638 4.75952 4.78031 4.85337 4.92637 4.94805 5.05074 5.08551 5.11532 5.19973 5.23826 5.42527 5.46027 5.50659 5.52775 5.55232 5.73049 5.83897 5.98480 6.08746 6.24145 6.41488 6.70690 7.31193 7.74205 8.03168 8.65356 9.45868 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009315 B = 0.005385 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.143555 B = 5198.780535 C = 7499.463094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.450 3.550 5 O -0.447 6.447 6 C 0.066 3.934 7 H 0.119 0.881 8 C -0.077 4.077 9 C -0.184 4.184 10 C -0.074 4.074 11 C -0.142 4.142 12 C -0.088 4.088 13 C -0.129 4.129 14 C -0.107 4.107 15 C 0.069 3.931 16 O -0.314 6.314 17 C 0.152 3.848 18 H 0.140 0.860 19 C -0.144 4.144 20 C 0.205 3.795 21 N -0.584 5.584 22 C -0.193 4.193 23 H 0.060 0.940 24 C -0.064 4.064 25 N -0.945 5.945 26 Si 0.954 3.046 27 H -0.271 1.271 28 H -0.306 1.306 29 H -0.291 1.291 30 C 0.119 3.881 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.074 0.926 38 H 0.156 0.844 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.020 0.980 47 H -0.023 1.023 48 H 0.231 0.769 49 H 0.037 0.963 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.986 -22.389 -5.348 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.022 4.022 3 N -0.341 5.341 4 C 0.234 3.766 5 O -0.314 6.314 6 C 0.007 3.993 7 H 0.137 0.863 8 C -0.114 4.114 9 C -0.185 4.185 10 C -0.092 4.092 11 C -0.160 4.160 12 C -0.106 4.106 13 C -0.130 4.130 14 C -0.164 4.164 15 C 0.024 3.976 16 O -0.228 6.228 17 C 0.048 3.952 18 H 0.157 0.843 19 C -0.183 4.183 20 C 0.081 3.919 21 N -0.308 5.308 22 C -0.324 4.324 23 H 0.078 0.922 24 C -0.256 4.256 25 N -0.597 5.597 26 Si 0.785 3.215 27 H -0.195 1.195 28 H -0.235 1.235 29 H -0.219 1.219 30 C -0.007 4.007 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.155 0.845 37 H 0.093 0.907 38 H 0.173 0.827 39 H 0.181 0.819 40 H 0.175 0.825 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.115 0.885 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.038 0.962 47 H -0.005 1.005 48 H 0.041 0.959 49 H 0.054 0.946 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -8.552 -21.392 -5.426 23.668 hybrid contribution 0.946 1.457 -0.487 1.804 sum -7.606 -19.934 -5.912 22.140 Atomic orbital electron populations 1.22395 0.95109 1.03391 1.02425 1.21890 0.95187 0.80503 1.04619 1.47779 1.67567 1.14936 1.03805 1.20691 0.81417 0.88932 0.85602 1.91538 1.39928 1.14814 1.85150 1.23363 0.96793 0.93323 0.85860 0.86319 1.21806 0.93673 1.05069 0.90843 1.21047 0.95648 1.05550 0.96256 1.20673 0.98677 0.98363 0.91481 1.21450 0.97589 1.00501 0.96468 1.21132 0.93327 0.97093 0.99035 1.19510 0.99742 1.04622 0.89140 1.20660 0.93698 0.99521 1.02535 1.19983 0.92033 0.97337 0.88254 1.86967 1.58581 1.60281 1.16969 1.22224 0.93583 0.93158 0.86269 0.84297 1.23196 0.98233 0.96357 1.00503 1.20760 0.83686 0.91862 0.95618 1.44338 1.03553 1.24303 1.58643 1.19043 0.88050 1.01307 1.23965 0.92197 1.25233 0.97504 1.00230 1.02653 1.70206 1.16263 1.24479 1.48710 0.85331 0.79474 0.78956 0.77726 1.19537 1.23480 1.21893 1.22076 0.96074 0.87772 0.94788 0.92458 0.88890 0.93342 0.87911 0.89716 0.84471 0.90718 0.82659 0.81853 0.82533 0.92736 0.93649 0.88457 0.91325 0.90016 0.96211 1.00459 0.95910 0.94573 0.95737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 9.46 71.98 0.68 -1.79 16 2 C 0.10 1.67 5.64 86.38 0.49 2.16 16 3 N -0.60 -17.76 2.56 -790.11 -2.02 -19.78 16 4 C 0.45 17.88 6.49 87.66 0.57 18.45 16 5 O -0.45 -24.30 8.48 15.14 0.13 -24.17 16 6 C 0.07 2.19 3.05 30.43 0.09 2.28 16 7 H 0.12 3.17 7.13 -2.39 -0.02 3.16 16 8 C -0.08 -1.98 4.47 30.73 0.14 -1.85 16 9 C -0.18 -5.16 6.27 -19.53 -0.12 -5.29 16 10 C -0.07 -1.55 10.03 22.18 0.22 -1.32 16 11 C -0.14 -2.66 10.07 22.31 0.22 -2.44 16 12 C -0.09 -1.97 9.66 22.21 0.21 -1.75 16 13 C -0.13 -3.97 5.90 -19.69 -0.12 -4.08 16 14 C -0.11 -3.20 9.98 71.23 0.71 -2.49 16 15 C 0.07 2.44 6.73 22.68 0.15 2.59 16 16 O -0.31 -13.49 10.27 -76.92 -0.79 -14.28 16 17 C 0.15 4.81 3.80 46.39 0.18 4.99 16 18 H 0.14 2.98 7.89 -2.39 -0.02 2.96 16 19 C -0.14 -5.38 6.53 31.78 0.21 -5.18 16 20 C 0.21 11.16 4.20 86.73 0.36 11.52 16 21 N -0.58 -32.46 1.77 -691.73 -1.22 -33.68 16 22 C -0.19 -12.15 8.98 84.03 0.75 -11.40 16 23 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 24 C -0.06 -4.15 5.48 84.86 0.47 -3.69 16 25 N -0.94 -64.29 10.31 21.65 0.22 -64.07 16 26 Si 0.95 52.66 29.55 68.60 2.03 54.69 16 27 H -0.27 -14.12 7.11 99.48 0.71 -13.41 16 28 H -0.31 -17.33 7.11 99.48 0.71 -16.63 16 29 H -0.29 -15.69 7.11 99.48 0.71 -14.99 16 30 C 0.12 5.04 6.29 86.84 0.55 5.59 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.85 5.25 -2.39 -0.01 0.84 16 34 H 0.10 1.21 7.96 -2.39 -0.02 1.20 16 35 H 0.08 1.21 5.69 -2.39 -0.01 1.19 16 36 H 0.14 2.23 6.60 -2.38 -0.02 2.21 16 37 H 0.07 2.23 7.16 -2.39 -0.02 2.21 16 38 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.04 1.52 8.01 -2.39 -0.02 1.50 16 43 H 0.10 2.11 8.08 -2.39 -0.02 2.09 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 46 H 0.02 1.27 5.46 -2.39 -0.01 1.25 16 47 H -0.02 -1.41 7.50 -2.39 -0.02 -1.43 16 48 H 0.23 15.53 8.31 -92.71 -0.77 14.76 16 49 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -92.20 381.31 5.05 -87.15 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.94 Total: 7.84 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.77 Total: 6.31 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -3.02 Total: -117.54 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -0.66 Total: -38.46 kcal Atomic # 14 Polarization: 52.66 SS G_CDS: 2.03 Total: 54.69 kcal Total: -92.20 5.05 -87.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034057842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.096 kcal (2) G-P(sol) polarization free energy of solvation -92.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds