Wall clock time and date at job start Wed Apr 1 2020 02:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47024 * 2 1 4 4 C 1.35656 * 117.00014 * 179.97438 * 3 2 1 5 5 C 1.38719 * 120.15102 * 0.25845 * 4 3 2 6 6 C 1.38045 * 120.08565 * 180.27438 * 5 4 3 7 7 C 1.38555 * 120.39049 * 359.74084 * 6 5 4 8 8 C 1.37791 * 120.30082 * 359.97438 * 7 6 5 9 9 C 1.39712 * 119.90529 * 0.02562 * 8 7 6 10 10 C 1.47534 * 120.18961 * 179.97438 * 9 8 7 11 11 O 1.21584 * 120.00238 * 125.90929 * 10 9 8 12 12 N 1.34778 * 119.99562 * 305.91040 * 10 9 8 13 13 C 1.46897 * 120.45931 * 174.25453 * 12 10 9 14 14 C 1.53358 * 108.74039 * 124.34061 * 13 12 10 15 15 C 1.52563 * 109.12550 * 52.26001 * 14 13 12 16 16 C 1.52959 * 114.06196 * 75.54013 * 15 14 13 17 17 N 1.47160 * 87.85797 * 139.43926 * 16 15 14 18 18 C 1.36930 * 136.00351 * 153.07401 * 17 16 15 19 19 H 1.08000 * 120.00026 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00151 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00239 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00301 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47054 * 89.99683 * 22 20 18 24 24 H 1.48496 * 109.47382 * 210.00022 * 22 20 18 25 25 H 1.48500 * 109.47020 * 330.00038 * 22 20 18 26 26 C 1.47174 * 87.99329 * 333.33930 * 17 16 15 27 27 C 1.52548 * 113.43136 * 302.66529 * 15 14 13 28 28 C 1.46888 * 120.46471 * 354.22941 * 12 10 9 29 29 H 1.08997 * 109.47401 * 300.00454 * 1 2 3 30 30 H 1.09002 * 109.47044 * 60.00054 * 1 2 3 31 31 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47401 * 239.99545 * 2 1 3 33 33 H 1.09002 * 109.47044 * 119.99946 * 2 1 3 34 34 H 1.08002 * 119.95165 * 359.97438 * 5 4 3 35 35 H 1.08000 * 119.80921 * 179.76128 * 6 5 4 36 36 H 1.07996 * 119.85135 * 180.02562 * 7 6 5 37 37 H 1.07996 * 120.04574 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.59260 * 4.56848 * 13 12 10 39 39 H 1.08994 * 109.59219 * 244.11571 * 13 12 10 40 40 H 1.09000 * 109.53196 * 292.36762 * 14 13 12 41 41 H 1.09001 * 109.58519 * 172.18736 * 14 13 12 42 42 H 1.09007 * 113.49160 * 24.68951 * 16 15 14 43 43 H 1.09002 * 113.49209 * 254.18776 * 16 15 14 44 44 H 0.97000 * 120.00365 * 179.97438 * 21 20 18 45 45 H 1.08997 * 113.49044 * 141.41641 * 26 17 16 46 46 H 1.09005 * 113.47944 * 271.91624 * 26 17 16 47 47 H 1.08999 * 109.52534 * 177.21605 * 27 15 14 48 48 H 1.08991 * 109.52963 * 297.42378 * 27 15 14 49 49 H 1.09001 * 109.58969 * 355.42428 * 28 12 10 50 50 H 1.08995 * 109.58711 * 115.86969 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5251 0.0005 5 6 4.1991 0.4272 -0.0043 6 6 5.5674 0.6096 0.0019 7 6 6.1042 1.8870 0.0077 8 6 5.2769 2.9888 0.0068 9 6 3.8902 2.8186 0.0004 10 6 2.9984 3.9940 -0.0001 11 8 2.1426 4.1074 -0.8562 12 7 3.1326 4.9419 0.9485 13 6 2.3372 6.1754 0.8864 14 6 1.5624 6.3287 2.2010 15 6 2.5345 6.2107 3.3709 16 6 3.4001 7.4526 3.5901 17 7 3.2027 7.2671 5.0366 18 6 3.8983 7.5799 6.1738 19 1 4.8451 8.0946 6.1033 20 6 3.3866 7.2353 7.4173 21 7 2.2329 6.6075 7.5033 22 14 4.3351 7.6627 8.9688 23 1 3.9220 9.0063 9.4473 24 1 4.0472 6.6531 10.0190 25 1 5.7905 7.6684 8.6734 26 6 1.9328 6.5918 4.7242 27 6 3.3137 4.8993 3.3822 28 6 4.0758 4.7559 2.0591 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7881 -0.5715 -0.0082 35 1 6.2234 -0.2483 0.0020 36 1 7.1760 2.0196 0.0122 37 1 5.6997 3.9825 0.0109 38 1 1.6362 6.1167 0.0538 39 1 2.9990 7.0306 0.7504 40 1 0.8085 5.5447 2.2733 41 1 1.0771 7.3044 2.2275 42 1 2.9518 8.3683 3.2044 43 1 4.4347 7.3227 3.2727 44 1 1.8755 6.3664 8.3722 45 1 1.7275 5.7345 5.3653 46 1 1.0860 7.2737 4.6467 47 1 4.0210 4.9029 4.2115 48 1 2.6214 4.0652 3.4962 49 1 4.5198 3.7623 1.9990 50 1 4.8585 5.5124 2.0043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035844104.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:51 Heat of formation + Delta-G solvation = 15.688061 kcal Electronic energy + Delta-G solvation = -31059.916386 eV Core-core repulsion = 27054.487281 eV Total energy + Delta-G solvation = -4005.429105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.86636 -39.81784 -38.55064 -37.53998 -35.64411 -32.65320 -32.25157 -31.73550 -30.57288 -30.24107 -29.68713 -26.90300 -24.95208 -24.48511 -24.15484 -23.14680 -22.72697 -21.82516 -21.15950 -19.80461 -18.46965 -17.68370 -16.76806 -16.65199 -16.37232 -16.32293 -15.75127 -15.23648 -14.83795 -14.78902 -14.54917 -14.50128 -13.79025 -13.77992 -13.59813 -13.47934 -13.44915 -12.88685 -12.82378 -12.57028 -12.27049 -12.18747 -12.14644 -12.01053 -11.80472 -11.60595 -11.26366 -11.05405 -11.01607 -10.95729 -10.83510 -10.76488 -10.36347 -10.21881 -9.70720 -9.69108 -9.54723 -9.15666 -9.13910 -8.77584 -8.44827 -8.29184 -6.83692 -5.74309 -3.06109 0.84163 1.18521 2.78720 2.94285 3.14085 3.39385 3.44153 3.46220 3.57501 4.41752 4.47348 4.54750 4.66827 4.69140 4.80687 4.93011 4.99188 5.07332 5.09223 5.14025 5.21908 5.23044 5.42113 5.43317 5.46567 5.54261 5.56982 5.60353 5.69250 5.74514 5.83440 5.91040 5.94008 5.98633 6.04444 6.09006 6.21255 6.24303 6.34532 6.41446 6.47497 6.56582 6.66090 6.71350 6.86388 6.90303 7.17506 7.26137 7.40283 7.58429 7.60149 8.00444 8.32453 9.06228 9.72968 10.68749 11.43067 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013175 B = 0.002854 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.724914 B = 9807.114425 C =10013.929878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.298 6.298 4 C 0.175 3.825 5 C -0.216 4.216 6 C -0.062 4.062 7 C -0.163 4.163 8 C -0.048 4.048 9 C -0.158 4.158 10 C 0.568 3.432 11 O -0.535 6.535 12 N -0.600 5.600 13 C 0.116 3.884 14 C -0.113 4.113 15 C -0.114 4.114 16 C 0.128 3.872 17 N -0.608 5.608 18 C -0.215 4.215 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.166 3.834 27 C -0.093 4.093 28 C 0.106 3.894 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.036 0.964 44 H 0.253 0.747 45 H 0.069 0.931 46 H 0.023 0.977 47 H 0.088 0.912 48 H 0.059 0.941 49 H 0.082 0.918 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.575 -13.918 -17.239 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.210 6.210 4 C 0.128 3.872 5 C -0.235 4.235 6 C -0.080 4.080 7 C -0.182 4.182 8 C -0.067 4.067 9 C -0.161 4.161 10 C 0.356 3.644 11 O -0.413 6.413 12 N -0.333 5.333 13 C -0.006 4.006 14 C -0.152 4.152 15 C -0.116 4.116 16 C 0.001 3.999 17 N -0.334 5.334 18 C -0.343 4.343 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.041 3.959 27 C -0.131 4.131 28 C -0.016 4.016 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.041 0.959 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.100 0.900 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.015 -13.683 -17.304 22.265 hybrid contribution 0.523 0.127 1.099 1.223 sum 3.538 -13.556 -16.205 21.422 Atomic orbital electron populations 1.21767 0.92479 1.02707 1.04004 1.22851 0.96332 0.81752 1.01257 1.86193 1.18286 1.29293 1.87239 1.18894 0.82877 0.92569 0.92887 1.21201 0.94389 0.97864 1.10031 1.21073 0.94206 0.97521 0.95214 1.20987 1.00127 0.92105 1.04947 1.21144 0.90731 0.99843 0.94986 1.19232 0.93973 0.91454 1.11485 1.18007 0.83043 0.81898 0.81432 1.90755 1.34752 1.77434 1.38329 1.48027 1.41570 1.18866 1.24794 1.21619 0.94779 0.85125 0.99041 1.21722 0.97845 1.02118 0.93539 1.22070 0.97572 0.95503 0.96427 1.22395 0.96693 0.94057 0.86720 1.45565 1.20761 1.67419 0.99623 1.18913 1.00834 1.31995 0.82544 0.90289 1.24769 0.97222 1.01223 0.97251 1.69833 1.19006 1.44646 1.23157 0.86151 0.79023 0.77588 0.83199 1.21707 1.21678 1.20645 1.22036 0.88815 0.95898 0.89185 1.21398 0.99339 0.96275 0.96099 1.21947 0.91575 1.01917 0.86157 0.91266 0.91325 0.90381 0.91989 0.91891 0.85025 0.85445 0.85229 0.84736 0.89446 0.91461 0.91817 0.90807 0.95226 0.94588 0.93735 0.91252 0.95891 0.89392 0.92197 0.89987 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.87 16 2 C 0.05 0.49 5.46 37.16 0.20 0.69 16 3 O -0.30 -4.09 9.34 -21.59 -0.20 -4.29 16 4 C 0.18 2.27 6.69 -38.69 -0.26 2.02 16 5 C -0.22 -2.13 9.03 -39.47 -0.36 -2.49 16 6 C -0.06 -0.53 10.03 -39.54 -0.40 -0.93 16 7 C -0.16 -1.45 10.02 -39.63 -0.40 -1.85 16 8 C -0.05 -0.52 7.73 -39.19 -0.30 -0.83 16 9 C -0.16 -2.15 4.62 -104.84 -0.48 -2.63 16 10 C 0.57 9.11 6.81 -12.47 -0.08 9.03 16 11 O -0.54 -10.25 16.17 2.37 0.04 -10.21 16 12 N -0.60 -8.89 2.94 -173.85 -0.51 -9.40 16 13 C 0.12 1.69 6.35 -3.64 -0.02 1.67 16 14 C -0.11 -1.78 5.30 -26.77 -0.14 -1.92 16 15 C -0.11 -2.09 0.84 -155.02 -0.13 -2.22 16 16 C 0.13 2.55 7.63 -8.22 -0.06 2.49 16 17 N -0.61 -15.35 3.55 -184.68 -0.66 -16.00 16 18 C -0.22 -5.98 10.74 -15.06 -0.16 -6.14 16 19 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -27.23 11.51 55.49 0.64 -26.59 16 22 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.17 3.89 6.54 -8.22 -0.05 3.84 16 27 C -0.09 -1.59 5.27 -26.78 -0.14 -1.73 16 28 C 0.11 1.48 5.52 -3.64 -0.02 1.46 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 33 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 34 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 1.27 7.76 -52.49 -0.41 0.86 16 38 H 0.09 1.31 6.97 -51.93 -0.36 0.95 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.11 8.10 -51.93 -0.42 0.68 16 42 H 0.03 0.59 8.06 -51.92 -0.42 0.17 16 43 H 0.04 0.68 7.53 -51.93 -0.39 0.29 16 44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.07 1.81 7.11 -51.93 -0.37 1.45 16 46 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 47 H 0.09 1.70 7.95 -51.93 -0.41 1.29 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.08 1.05 5.27 -51.93 -0.27 0.77 16 50 H 0.07 0.91 7.60 -51.93 -0.39 0.52 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -34.13 395.93 -10.20 -44.33 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.92 Total: -0.07 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.53 Total: -0.74 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.53 Total: -51.99 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.16 Total: -14.50 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.13 -10.20 -44.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035844104.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.015 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds