Wall clock time and date at job start Wed Apr 1 2020 02:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47024 * 2 1 4 4 C 1.35656 * 117.00014 * 179.97438 * 3 2 1 5 5 C 1.38719 * 120.15102 * 0.25845 * 4 3 2 6 6 C 1.38045 * 120.08565 * 180.27438 * 5 4 3 7 7 C 1.38555 * 120.39049 * 359.74084 * 6 5 4 8 8 C 1.37791 * 120.30082 * 359.97438 * 7 6 5 9 9 C 1.39712 * 119.90529 * 0.02562 * 8 7 6 10 10 C 1.47534 * 120.18961 * 179.97438 * 9 8 7 11 11 O 1.21584 * 120.00238 * 125.90929 * 10 9 8 12 12 N 1.34778 * 119.99562 * 305.91040 * 10 9 8 13 13 C 1.46897 * 120.45931 * 174.25453 * 12 10 9 14 14 C 1.53358 * 108.74039 * 124.34061 * 13 12 10 15 15 C 1.52563 * 109.12550 * 52.26001 * 14 13 12 16 16 C 1.52959 * 114.06196 * 75.54013 * 15 14 13 17 17 N 1.47160 * 87.85797 * 139.43926 * 16 15 14 18 18 C 1.36930 * 136.00351 * 153.07401 * 17 16 15 19 19 H 1.08000 * 120.00026 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00151 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00239 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00301 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47054 * 89.99683 * 22 20 18 24 24 H 1.48496 * 109.47382 * 210.00022 * 22 20 18 25 25 H 1.48500 * 109.47020 * 330.00038 * 22 20 18 26 26 C 1.47174 * 87.99329 * 333.33930 * 17 16 15 27 27 C 1.52548 * 113.43136 * 302.66529 * 15 14 13 28 28 C 1.46888 * 120.46471 * 354.22941 * 12 10 9 29 29 H 1.08997 * 109.47401 * 300.00454 * 1 2 3 30 30 H 1.09002 * 109.47044 * 60.00054 * 1 2 3 31 31 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47401 * 239.99545 * 2 1 3 33 33 H 1.09002 * 109.47044 * 119.99946 * 2 1 3 34 34 H 1.08002 * 119.95165 * 359.97438 * 5 4 3 35 35 H 1.08000 * 119.80921 * 179.76128 * 6 5 4 36 36 H 1.07996 * 119.85135 * 180.02562 * 7 6 5 37 37 H 1.07996 * 120.04574 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.59260 * 4.56848 * 13 12 10 39 39 H 1.08994 * 109.59219 * 244.11571 * 13 12 10 40 40 H 1.09000 * 109.53196 * 292.36762 * 14 13 12 41 41 H 1.09001 * 109.58519 * 172.18736 * 14 13 12 42 42 H 1.09007 * 113.49160 * 24.68951 * 16 15 14 43 43 H 1.09002 * 113.49209 * 254.18776 * 16 15 14 44 44 H 0.97000 * 120.00365 * 179.97438 * 21 20 18 45 45 H 1.08997 * 113.49044 * 141.41641 * 26 17 16 46 46 H 1.09005 * 113.47944 * 271.91624 * 26 17 16 47 47 H 1.08999 * 109.52534 * 177.21605 * 27 15 14 48 48 H 1.08991 * 109.52963 * 297.42378 * 27 15 14 49 49 H 1.09001 * 109.58969 * 355.42428 * 28 12 10 50 50 H 1.08995 * 109.58711 * 115.86969 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5251 0.0005 5 6 4.1991 0.4272 -0.0043 6 6 5.5674 0.6096 0.0019 7 6 6.1042 1.8870 0.0077 8 6 5.2769 2.9888 0.0068 9 6 3.8902 2.8186 0.0004 10 6 2.9984 3.9940 -0.0001 11 8 2.1426 4.1074 -0.8562 12 7 3.1326 4.9419 0.9485 13 6 2.3372 6.1754 0.8864 14 6 1.5624 6.3287 2.2010 15 6 2.5345 6.2107 3.3709 16 6 3.4001 7.4526 3.5901 17 7 3.2027 7.2671 5.0366 18 6 3.8983 7.5799 6.1738 19 1 4.8451 8.0946 6.1033 20 6 3.3866 7.2353 7.4173 21 7 2.2329 6.6075 7.5033 22 14 4.3351 7.6627 8.9688 23 1 3.9220 9.0063 9.4473 24 1 4.0472 6.6531 10.0190 25 1 5.7905 7.6684 8.6734 26 6 1.9328 6.5918 4.7242 27 6 3.3137 4.8993 3.3822 28 6 4.0758 4.7559 2.0591 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7881 -0.5715 -0.0082 35 1 6.2234 -0.2483 0.0020 36 1 7.1760 2.0196 0.0122 37 1 5.6997 3.9825 0.0109 38 1 1.6362 6.1167 0.0538 39 1 2.9990 7.0306 0.7504 40 1 0.8085 5.5447 2.2733 41 1 1.0771 7.3044 2.2275 42 1 2.9518 8.3683 3.2044 43 1 4.4347 7.3227 3.2727 44 1 1.8755 6.3664 8.3722 45 1 1.7275 5.7345 5.3653 46 1 1.0860 7.2737 4.6467 47 1 4.0210 4.9029 4.2115 48 1 2.6214 4.0652 3.4962 49 1 4.5198 3.7623 1.9990 50 1 4.8585 5.5124 2.0043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035844104.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:49 Heat of formation + Delta-G solvation = -4.231584 kcal Electronic energy + Delta-G solvation = -31060.780167 eV Core-core repulsion = 27054.487281 eV Total energy + Delta-G solvation = -4006.292886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.93061 -41.05207 -39.87130 -38.36043 -37.06584 -34.45888 -33.20997 -32.73474 -31.87294 -31.53541 -30.50795 -28.71767 -26.61368 -25.70532 -25.04972 -24.45921 -24.00956 -22.76098 -22.49736 -20.99536 -19.52138 -18.76931 -18.64954 -17.98723 -17.37509 -17.13682 -16.90772 -16.72801 -16.13326 -16.02590 -15.84509 -15.62253 -15.37370 -15.11343 -14.61481 -14.56178 -14.36176 -14.16539 -14.12081 -13.69211 -13.63351 -13.42418 -13.12778 -12.93195 -12.91258 -12.87082 -12.80404 -12.61807 -12.51157 -12.18474 -12.15313 -11.96631 -11.74984 -11.64747 -11.63529 -11.15239 -10.91328 -10.87746 -10.79080 -9.95482 -9.60409 -9.21318 -8.87887 -7.87517 -5.20382 0.04137 0.42873 1.46240 1.48183 1.56737 1.64612 2.04231 2.21100 2.49114 2.76558 3.33784 3.44095 3.48286 3.61283 3.83036 3.87357 3.95700 4.01668 4.09082 4.15099 4.19209 4.26438 4.31924 4.34488 4.37319 4.43107 4.51477 4.58593 4.67080 4.75278 4.79057 4.84554 4.85648 4.88597 4.89436 4.92145 5.05771 5.13273 5.14934 5.19721 5.25813 5.28707 5.33576 5.36161 5.50335 5.54079 5.58298 5.73888 5.80073 5.95405 6.34261 6.45631 6.93047 7.13740 7.63447 8.65678 9.30126 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013175 B = 0.002854 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.724914 B = 9807.114425 C =10013.929878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.151 3.849 5 C -0.217 4.217 6 C -0.054 4.054 7 C -0.159 4.159 8 C -0.053 4.053 9 C -0.191 4.191 10 C 0.567 3.433 11 O -0.577 6.577 12 N -0.599 5.599 13 C 0.120 3.880 14 C -0.105 4.105 15 C -0.087 4.087 16 C 0.133 3.867 17 N -0.636 5.636 18 C -0.223 4.223 19 H 0.087 0.913 20 C -0.069 4.069 21 N -0.955 5.955 22 Si 0.977 3.023 23 H -0.290 1.290 24 H -0.296 1.296 25 H -0.264 1.264 26 C 0.161 3.839 27 C -0.088 4.088 28 C 0.120 3.880 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.146 0.854 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.055 0.945 44 H 0.246 0.754 45 H 0.032 0.968 46 H 0.010 0.990 47 H 0.065 0.935 48 H 0.049 0.951 49 H 0.098 0.902 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.446 -14.964 -18.450 24.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.247 6.247 4 C 0.104 3.896 5 C -0.236 4.236 6 C -0.072 4.072 7 C -0.177 4.177 8 C -0.071 4.071 9 C -0.194 4.194 10 C 0.357 3.643 11 O -0.457 6.457 12 N -0.331 5.331 13 C -0.002 4.002 14 C -0.144 4.144 15 C -0.089 4.089 16 C 0.008 3.992 17 N -0.361 5.361 18 C -0.351 4.351 19 H 0.105 0.895 20 C -0.262 4.262 21 N -0.604 5.604 22 Si 0.806 3.194 23 H -0.217 1.217 24 H -0.223 1.223 25 H -0.189 1.189 26 C 0.035 3.965 27 C -0.126 4.126 28 C -0.002 4.002 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.171 0.829 35 H 0.180 0.820 36 H 0.178 0.822 37 H 0.164 0.836 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.028 0.972 47 H 0.084 0.916 48 H 0.067 0.933 49 H 0.116 0.884 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.917 -14.718 -18.540 24.400 hybrid contribution -0.378 0.401 1.441 1.543 sum 5.540 -14.317 -17.099 22.979 Atomic orbital electron populations 1.21807 0.92290 1.04163 1.02562 1.23116 0.96577 0.80479 1.02707 1.86149 1.19210 1.31723 1.87637 1.19223 0.83056 0.93339 0.94004 1.21505 0.94847 0.97959 1.09241 1.21552 0.94015 0.98698 0.92953 1.21384 1.01427 0.91608 1.03272 1.21342 0.89660 1.01274 0.94848 1.19276 0.94849 0.90761 1.14553 1.18473 0.82739 0.82357 0.80750 1.90717 1.36688 1.78337 1.39950 1.48086 1.41521 1.18784 1.24721 1.21609 0.95053 0.85893 0.97657 1.21648 0.97150 1.02449 0.93159 1.21843 0.96987 0.95641 0.94405 1.22524 0.98104 0.94949 0.83661 1.45887 1.21218 1.67758 1.01269 1.19339 1.01220 1.30867 0.83682 0.89542 1.25615 0.98337 1.01834 1.00396 1.70041 1.20807 1.46368 1.23192 0.85091 0.78524 0.76746 0.79080 1.21696 1.22295 1.18880 1.22008 0.88497 0.94346 0.91649 1.21305 0.98777 0.95144 0.97398 1.21886 0.91038 1.03586 0.83736 0.92869 0.92549 0.87439 0.90251 0.90498 0.82856 0.81969 0.82239 0.83634 0.89897 0.89325 0.92786 0.89756 0.93924 0.92675 0.94522 0.94998 0.97191 0.91629 0.93271 0.88428 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 10.28 71.98 0.74 -1.75 16 2 C 0.05 0.81 5.46 71.98 0.39 1.20 16 3 O -0.33 -9.30 9.34 -86.92 -0.81 -10.11 16 4 C 0.15 3.81 6.69 22.85 0.15 3.96 16 5 C -0.22 -3.75 9.03 22.34 0.20 -3.55 16 6 C -0.05 -0.72 10.03 22.30 0.22 -0.49 16 7 C -0.16 -2.23 10.02 22.24 0.22 -2.01 16 8 C -0.05 -1.02 7.73 22.52 0.17 -0.84 16 9 C -0.19 -5.05 4.62 -20.01 -0.09 -5.14 16 10 C 0.57 18.16 6.81 86.69 0.59 18.75 16 11 O -0.58 -22.61 16.17 -1.19 -0.02 -22.63 16 12 N -0.60 -17.24 2.94 -822.20 -2.42 -19.65 16 13 C 0.12 3.35 6.35 86.42 0.55 3.89 16 14 C -0.11 -3.27 5.30 30.57 0.16 -3.11 16 15 C -0.09 -3.20 0.84 -52.51 -0.04 -3.24 16 16 C 0.13 5.13 7.63 83.31 0.64 5.77 16 17 N -0.64 -32.36 3.55 -738.21 -2.62 -34.98 16 18 C -0.22 -12.42 10.74 84.03 0.90 -11.51 16 19 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 21 N -0.95 -58.53 11.51 21.65 0.25 -58.28 16 22 Si 0.98 45.76 29.55 68.60 2.03 47.79 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 26 C 0.16 7.80 6.54 83.30 0.55 8.35 16 27 C -0.09 -3.00 5.27 30.57 0.16 -2.84 16 28 C 0.12 3.15 5.52 86.43 0.48 3.63 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.09 7.65 -2.39 -0.02 1.07 16 33 H 0.08 1.10 7.67 -2.39 -0.02 1.08 16 34 H 0.15 1.84 6.30 -2.91 -0.02 1.82 16 35 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.15 2.35 7.76 -2.91 -0.02 2.33 16 38 H 0.08 2.45 6.97 -2.39 -0.02 2.44 16 39 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.08 2.46 8.10 -2.39 -0.02 2.44 16 42 H 0.04 1.59 8.06 -2.38 -0.02 1.57 16 43 H 0.06 1.94 7.53 -2.39 -0.02 1.92 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.03 1.76 7.11 -2.39 -0.02 1.75 16 46 H 0.01 0.52 8.09 -2.38 -0.02 0.50 16 47 H 0.07 2.56 7.95 -2.39 -0.02 2.54 16 48 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.10 2.33 5.27 -2.39 -0.01 2.31 16 50 H 0.09 2.05 7.60 -2.39 -0.02 2.04 16 Total: -1.00 -77.75 395.93 3.80 -73.95 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.93 Total: 16.33 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 6.46 Total: 7.58 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -4.79 Total: -112.91 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.83 Total: -32.75 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -77.75 3.80 -73.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035844104.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.723 kcal (2) G-P(sol) polarization free energy of solvation -77.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds