Wall clock time and date at job start Wed Apr 1 2020 03:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21285 * 119.99746 * 2 1 4 4 N 1.34772 * 120.00357 * 180.02562 * 2 1 3 5 5 C 1.46598 * 119.67877 * 359.97331 * 4 2 1 6 6 C 1.53953 * 110.57841 * 227.81949 * 5 4 2 7 7 C 1.51503 * 107.34436 * 308.93091 * 6 5 4 8 8 H 1.09007 * 108.88398 * 306.51903 * 7 6 5 9 9 C 1.55361 * 107.76707 * 64.88775 * 7 6 5 10 10 H 1.09004 * 112.22622 * 50.77185 * 9 7 6 11 11 C 1.53720 * 100.30547 * 168.98581 * 9 7 6 12 12 C 1.55292 * 101.91108 * 320.75688 * 11 9 7 13 13 N 1.45898 * 117.27405 * 181.81562 * 7 6 5 14 14 C 1.46903 * 111.00054 * 89.51785 * 13 7 6 15 15 C 1.50703 * 109.47186 * 188.83252 * 14 13 7 16 16 C 1.38297 * 119.93241 * 89.99631 * 15 14 13 17 17 C 1.38096 * 120.07251 * 179.97438 * 16 15 14 18 18 C 1.38884 * 119.92867 * 0.02562 * 17 16 15 19 19 O 1.35748 * 120.06489 * 179.97438 * 18 17 16 20 20 C 1.34830 * 117.00440 * 5.53969 * 19 18 17 21 21 H 1.07996 * 119.99879 * 354.93905 * 20 19 18 22 22 C 1.38652 * 120.00236 * 174.93884 * 20 19 18 23 23 N 1.31564 * 119.99600 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00376 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47164 * 270.00105 * 24 22 20 26 26 H 1.48499 * 109.47556 * 149.99876 * 24 22 20 27 27 H 1.48505 * 109.46925 * 29.99564 * 24 22 20 28 28 C 1.38874 * 119.85951 * 0.25970 * 18 17 16 29 29 C 1.38103 * 119.93228 * 359.48329 * 28 18 17 30 30 C 1.47717 * 119.68824 * 179.97438 * 4 2 1 31 31 H 1.09009 * 109.46816 * 240.00281 * 1 2 3 32 32 H 1.08998 * 109.46912 * 359.97438 * 1 2 3 33 33 H 1.09002 * 109.47396 * 120.00023 * 1 2 3 34 34 H 1.09000 * 109.25553 * 348.10569 * 5 4 2 35 35 H 1.09006 * 109.25634 * 107.57113 * 5 4 2 36 36 H 1.08995 * 109.88371 * 68.39695 * 6 5 4 37 37 H 1.09000 * 109.88069 * 189.40625 * 6 5 4 38 38 H 1.09000 * 110.94045 * 202.60461 * 11 9 7 39 39 H 1.08993 * 110.94287 * 78.91432 * 11 9 7 40 40 H 1.08997 * 109.92614 * 263.24306 * 12 11 9 41 41 H 1.08998 * 110.09464 * 142.01307 * 12 11 9 42 42 H 1.09000 * 109.47051 * 68.83616 * 14 13 7 43 43 H 1.08999 * 109.47488 * 308.83140 * 14 13 7 44 44 H 1.08005 * 119.96184 * 0.02562 * 16 15 14 45 45 H 1.07994 * 120.03580 * 180.02562 * 17 16 15 46 46 H 0.97000 * 120.00300 * 0.02562 * 23 22 20 47 47 H 1.08005 * 120.03513 * 179.72217 * 28 18 17 48 48 H 1.08003 * 119.96143 * 180.23214 * 29 28 18 49 49 H 1.09005 * 110.06308 * 8.74488 * 30 4 2 50 50 H 1.08997 * 110.07030 * 247.17237 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4409 -2.4326 -0.0005 6 6 2.0036 -3.3885 1.0671 7 6 3.5027 -3.4635 0.8611 8 1 3.7033 -3.7302 -0.1766 9 6 4.0921 -2.0555 1.1507 10 1 3.7566 -1.6570 2.1082 11 6 5.5930 -2.3861 1.1792 12 6 5.6056 -3.7560 1.9104 13 7 4.2549 -4.3513 1.7413 14 6 4.3428 -5.7038 1.1745 15 6 4.9313 -6.6401 2.1983 16 6 4.1011 -7.3120 3.0768 17 6 4.6373 -8.1712 4.0157 18 6 6.0118 -8.3597 4.0775 19 8 6.5419 -9.2032 4.9996 20 6 5.6751 -9.9138 5.7490 21 1 4.6133 -9.7384 5.6587 22 6 6.1469 -10.8698 6.6355 23 7 7.4404 -11.0838 6.7451 24 14 4.9460 -11.8549 7.6732 25 1 4.7019 -11.1458 8.9549 26 1 5.5172 -13.1972 7.9511 27 1 3.6642 -12.0048 6.9385 28 6 6.8433 -7.6790 3.1977 29 6 6.3006 -6.8253 2.2576 30 6 3.6581 -1.1590 -0.0011 31 1 -0.3633 -0.5138 0.8901 32 1 -0.3633 1.0277 0.0005 33 1 -0.3634 -0.5138 -0.8900 34 1 0.3903 -2.2347 0.2121 35 1 1.5272 -2.8996 -0.9817 36 1 1.7850 -3.0023 2.0626 37 1 1.5622 -4.3780 0.9483 38 1 6.1463 -1.6371 1.7456 39 1 5.9904 -2.4802 0.1686 40 1 5.8171 -3.6098 2.9696 41 1 6.3576 -4.4096 1.4684 42 1 4.9793 -5.6863 0.2898 43 1 3.3460 -6.0475 0.8983 44 1 3.0322 -7.1653 3.0280 45 1 3.9884 -8.6958 4.7012 46 1 8.0640 -10.5725 6.2060 47 1 7.9130 -7.8200 3.2462 48 1 6.9465 -6.2985 1.5707 49 1 4.0265 -0.1450 0.1547 50 1 4.0340 -1.5539 -0.9449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036604200.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:28 Heat of formation + Delta-G solvation = -53.456180 kcal Electronic energy + Delta-G solvation = -29852.355877 eV Core-core repulsion = 25843.928453 eV Total energy + Delta-G solvation = -4008.427424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73096 -40.89667 -40.07474 -38.50724 -36.92987 -34.55413 -33.93462 -32.77997 -31.90883 -31.57863 -30.11165 -29.21694 -27.17659 -26.06725 -24.95958 -23.95802 -23.56644 -22.53178 -21.47554 -21.18459 -20.27201 -19.97645 -18.69306 -17.96130 -17.17912 -16.96303 -16.68205 -16.60311 -16.38877 -16.12105 -15.69014 -15.61075 -15.23245 -15.10184 -15.04058 -14.68373 -14.34983 -14.25860 -14.04776 -14.01999 -13.72807 -13.48415 -13.12280 -13.02049 -12.93148 -12.91510 -12.68318 -12.37385 -12.32719 -12.21173 -12.11566 -11.96238 -11.92658 -11.83699 -11.66148 -11.24707 -11.17095 -10.85236 -10.75162 -9.82245 -9.73983 -9.27001 -8.98159 -8.92431 -6.24180 0.54797 0.62709 1.48276 1.59943 1.61671 1.77182 2.00006 2.35642 2.71403 2.99824 3.18335 3.34056 3.48682 3.63846 3.74555 3.82419 3.98623 4.01732 4.07667 4.13657 4.17018 4.25890 4.29327 4.41979 4.45813 4.47483 4.52975 4.56758 4.61825 4.66518 4.69932 4.76703 4.78527 4.79292 4.86475 4.93375 4.97127 5.02557 5.06763 5.15915 5.22903 5.24358 5.30093 5.36425 5.51162 5.53170 5.72410 5.75985 6.03992 6.05959 6.22205 6.31270 6.38401 6.86768 7.14091 7.63548 8.50664 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.001973 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.235873 B =14187.773232 C =14879.035267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.500 3.500 3 O -0.604 6.604 4 N -0.613 5.613 5 C 0.109 3.891 6 C -0.115 4.115 7 C 0.072 3.928 8 H 0.057 0.943 9 C -0.103 4.103 10 H 0.071 0.929 11 C -0.125 4.125 12 C 0.042 3.958 13 N -0.527 5.527 14 C 0.113 3.887 15 C -0.146 4.146 16 C -0.049 4.049 17 C -0.241 4.241 18 C 0.114 3.886 19 O -0.255 6.255 20 C -0.485 4.485 21 H 0.091 0.909 22 C -0.047 4.047 23 N -0.919 5.919 24 Si 1.148 2.852 25 H -0.265 1.265 26 H -0.273 1.273 27 H -0.258 1.258 28 C -0.206 4.206 29 C -0.060 4.060 30 C 0.125 3.875 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.093 0.907 44 H 0.139 0.861 45 H 0.114 0.886 46 H 0.259 0.741 47 H 0.111 0.889 48 H 0.144 0.856 49 H 0.075 0.925 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.655 18.465 -18.141 30.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.291 3.709 3 O -0.486 6.486 4 N -0.345 5.345 5 C -0.013 4.013 6 C -0.154 4.154 7 C -0.036 4.036 8 H 0.075 0.925 9 C -0.122 4.122 10 H 0.090 0.910 11 C -0.164 4.164 12 C -0.086 4.086 13 N -0.251 5.251 14 C -0.014 4.014 15 C -0.147 4.147 16 C -0.068 4.068 17 C -0.261 4.261 18 C 0.064 3.936 19 O -0.163 6.163 20 C -0.561 4.561 21 H 0.108 0.892 22 C -0.243 4.243 23 N -0.554 5.554 24 Si 0.963 3.037 25 H -0.190 1.190 26 H -0.198 1.198 27 H -0.182 1.182 28 C -0.225 4.225 29 C -0.078 4.078 30 C 0.003 3.997 31 H 0.128 0.872 32 H 0.104 0.896 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.157 0.843 45 H 0.132 0.868 46 H 0.068 0.932 47 H 0.129 0.871 48 H 0.161 0.839 49 H 0.093 0.907 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.472 17.688 -16.469 28.696 hybrid contribution 1.318 1.040 -1.346 2.152 sum -14.155 18.728 -17.815 29.470 Atomic orbital electron populations 1.21989 0.88445 1.05959 1.06316 1.21673 0.92423 0.82564 0.74216 1.90690 1.72137 1.33049 1.52688 1.48448 1.06697 1.06885 1.72478 1.22020 0.97101 0.82390 0.99808 1.21683 0.93627 1.00602 0.99468 1.22096 0.95236 0.91098 0.95217 0.92528 1.22361 0.95879 0.95370 0.98637 0.91009 1.22578 0.95497 0.96701 1.01629 1.23182 0.90153 0.94847 1.00377 1.63288 1.13362 1.01434 1.46997 1.20971 1.01028 0.86869 0.92565 1.19612 0.92753 1.01527 1.00813 1.20908 1.00178 0.93180 0.92499 1.21270 0.94121 1.06041 1.04626 1.19831 0.93422 0.91003 0.89314 1.83639 1.37263 1.50660 1.44714 1.22593 0.90877 1.20495 1.22139 0.89183 1.28402 1.00960 0.96687 0.98223 1.70687 1.02747 1.41445 1.40475 0.82543 0.71842 0.74791 0.74496 1.18988 1.19806 1.18232 1.20428 0.98907 1.03733 0.99410 1.20884 0.95147 0.95511 0.96256 1.21492 0.79685 1.00530 0.98019 0.87236 0.89560 0.86723 0.86654 0.89638 0.91856 0.88903 0.90339 0.89733 0.92438 0.92012 0.92953 0.88898 0.84296 0.86776 0.93221 0.87063 0.83859 0.90693 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 8.65 71.24 0.62 -0.59 16 2 C 0.50 8.42 7.78 87.66 0.68 9.10 16 3 O -0.60 -16.38 16.44 -3.05 -0.05 -16.43 16 4 N -0.61 -8.13 3.00 -817.96 -2.45 -10.59 16 5 C 0.11 0.75 6.21 86.68 0.54 1.28 16 6 C -0.12 -1.24 6.06 30.43 0.18 -1.05 16 7 C 0.07 1.04 1.72 45.43 0.08 1.11 16 8 H 0.06 0.72 7.62 -2.38 -0.02 0.71 16 9 C -0.10 -1.61 2.85 -9.98 -0.03 -1.63 16 10 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 11 C -0.13 -1.92 6.53 31.62 0.21 -1.71 16 12 C 0.04 0.84 6.23 86.77 0.54 1.38 16 13 N -0.53 -10.47 5.10 -866.83 -4.42 -14.89 16 14 C 0.11 2.28 4.74 85.56 0.41 2.68 16 15 C -0.15 -4.26 5.11 -19.83 -0.10 -4.36 16 16 C -0.05 -1.65 9.69 22.25 0.22 -1.44 16 17 C -0.24 -10.57 9.17 22.39 0.21 -10.36 16 18 C 0.11 5.68 6.65 22.58 0.15 5.83 16 19 O -0.25 -15.33 9.16 -22.72 -0.21 -15.54 16 20 C -0.49 -28.68 9.49 67.92 0.64 -28.04 16 21 H 0.09 4.97 5.20 -2.91 -0.02 4.96 16 22 C -0.05 -2.73 5.49 84.83 0.47 -2.26 16 23 N -0.92 -58.06 13.70 21.61 0.30 -57.76 16 24 Si 1.15 48.52 29.92 68.60 2.05 50.58 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 27 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 28 C -0.21 -8.59 9.99 22.39 0.22 -8.37 16 29 C -0.06 -1.90 8.76 22.25 0.19 -1.71 16 30 C 0.13 1.88 5.96 85.91 0.51 2.40 16 31 H 0.11 0.37 7.55 -2.38 -0.02 0.36 16 32 H 0.09 0.75 8.12 -2.39 -0.02 0.73 16 33 H 0.11 0.23 7.99 -2.39 -0.02 0.21 16 34 H 0.12 0.23 5.83 -2.39 -0.01 0.22 16 35 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 36 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.21 5.66 -2.39 -0.01 1.20 16 42 H 0.05 0.93 7.89 -2.39 -0.02 0.91 16 43 H 0.09 1.59 8.03 -2.39 -0.02 1.57 16 44 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 45 H 0.11 5.20 5.64 -2.91 -0.02 5.18 16 46 H 0.26 17.11 7.97 -92.71 -0.74 16.37 16 47 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 48 H 0.14 3.55 6.93 -2.91 -0.02 3.53 16 49 H 0.07 1.47 7.00 -2.38 -0.02 1.45 16 50 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 Total: -1.00 -79.90 392.29 1.92 -77.99 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.97 Total: 24.39 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 5.73 Total: -37.75 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -6.58 Total: -83.24 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.26 Total: -31.97 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.05 Total: 50.58 kcal Total: -79.90 1.92 -77.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036604200.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.529 kcal (2) G-P(sol) polarization free energy of solvation -79.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds