Wall clock time and date at job start Wed Apr 1 2020 02:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47148 * 2 1 4 4 C 1.35909 * 116.99920 * 180.02562 * 3 2 1 5 5 C 1.38846 * 119.98825 * 359.97438 * 4 3 2 6 6 C 1.38245 * 120.24462 * 180.02562 * 5 4 3 7 7 C 1.38009 * 120.20443 * 359.97438 * 6 5 4 8 8 C 1.39568 * 119.96591 * 359.97438 * 7 6 5 9 9 C 1.47853 * 120.11699 * 180.02562 * 8 7 6 10 10 O 1.21550 * 120.00354 * 319.06395 * 9 8 7 11 11 N 1.34776 * 120.00044 * 139.06768 * 9 8 7 12 12 C 1.46531 * 120.97744 * 354.17028 * 11 9 8 13 13 C 1.51784 * 110.13459 * 233.74830 * 12 11 9 14 14 C 1.49510 * 115.06659 * 318.38090 * 13 12 11 15 15 H 1.08999 * 105.92383 * 157.46363 * 14 13 12 16 16 C 1.52678 * 116.96863 * 40.06532 * 14 13 12 17 17 H 1.08995 * 112.03146 * 83.76207 * 16 14 13 18 18 C 1.56115 * 101.71202 * 203.76368 * 16 14 13 19 19 C 1.55095 * 101.11742 * 37.83533 * 18 16 14 20 20 N 1.46250 * 113.52304 * 272.75660 * 14 13 12 21 21 C 1.36938 * 125.96254 * 315.02428 * 20 14 13 22 22 H 1.08003 * 120.00025 * 359.97438 * 21 20 14 23 23 C 1.38810 * 120.00304 * 179.97438 * 21 20 14 24 24 N 1.31618 * 119.99904 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00246 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46868 * 90.00076 * 25 23 21 27 27 H 1.48495 * 109.47320 * 210.00092 * 25 23 21 28 28 H 1.48504 * 109.47125 * 330.00740 * 25 23 21 29 29 C 1.45041 * 120.59572 * 174.72992 * 11 9 8 30 30 C 1.38461 * 119.98416 * 180.25927 * 4 3 2 31 31 H 1.09002 * 109.47226 * 300.00255 * 1 2 3 32 32 H 1.08998 * 109.47371 * 59.99929 * 1 2 3 33 33 H 1.09000 * 109.47423 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46845 * 240.00610 * 2 1 3 35 35 H 1.08998 * 109.47371 * 120.00071 * 2 1 3 36 36 H 1.08004 * 119.88182 * 0.02562 * 5 4 3 37 37 H 1.07993 * 119.90071 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.01761 * 180.02562 * 7 6 5 39 39 H 1.08994 * 109.36377 * 113.53958 * 12 11 9 40 40 H 1.09003 * 109.35731 * 353.94839 * 12 11 9 41 41 H 1.08998 * 108.36664 * 196.93122 * 13 12 11 42 42 H 1.09009 * 108.22570 * 79.72510 * 13 12 11 43 43 H 1.09005 * 111.09601 * 155.80615 * 18 16 14 44 44 H 1.08993 * 111.09917 * 279.85985 * 18 16 14 45 45 H 1.09004 * 110.35444 * 81.82068 * 19 18 16 46 46 H 1.09005 * 110.35187 * 204.09560 * 19 18 16 47 47 H 0.97002 * 119.99984 * 179.97438 * 24 23 21 48 48 H 1.09002 * 110.02428 * 0.96160 * 29 11 9 49 49 H 1.08998 * 108.14455 * 241.30125 * 29 11 9 50 50 H 1.08004 * 120.10178 * 0.02562 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1992 0.4240 -0.0005 6 6 5.5706 0.5990 -0.0005 7 6 6.1083 1.8700 -0.0011 8 6 5.2664 2.9832 -0.0022 9 6 5.8389 4.3463 -0.0034 10 8 6.8074 4.5994 0.6862 11 7 5.2870 5.3084 -0.7690 12 6 4.2008 4.9988 -1.7026 13 6 4.5565 5.4823 -3.0967 14 6 5.2109 6.8254 -3.1537 15 1 5.7545 6.8533 -4.0980 16 6 6.2438 7.1386 -2.0739 17 1 7.2291 6.7455 -2.3243 18 6 6.2191 8.6995 -2.0551 19 6 4.7083 8.9773 -2.2686 20 7 4.2607 7.9354 -3.2168 21 6 3.1507 7.9993 -4.0161 22 1 2.9138 7.1793 -4.6779 23 6 2.3299 9.1180 -3.9759 24 7 2.6188 10.1176 -3.1698 25 14 0.8160 9.2055 -5.0668 26 1 -0.3482 8.6325 -4.3447 27 1 0.5358 10.6224 -5.4120 28 1 1.0569 8.4311 -6.3108 29 6 5.7652 6.6757 -0.6952 30 6 3.8826 2.8049 0.0049 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 3.7841 -0.5731 -0.0005 37 1 6.2231 -0.2615 -0.0001 38 1 7.1800 2.0032 -0.0015 39 1 3.2875 5.4926 -1.3710 40 1 4.0391 3.9211 -1.7242 41 1 3.6433 5.5198 -3.6906 42 1 5.2288 4.7532 -3.5492 43 1 6.5570 9.0856 -1.0934 44 1 6.8130 9.1112 -2.8711 45 1 4.1693 8.8878 -1.3254 46 1 4.5620 9.9689 -2.6971 47 1 2.0454 10.8995 -3.1419 48 1 6.5865 6.7459 0.0180 49 1 4.9399 7.3066 -0.3652 50 1 3.2260 3.6624 0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036830203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:23 Heat of formation + Delta-G solvation = -8.761645 kcal Electronic energy + Delta-G solvation = -31050.874610 eV Core-core repulsion = 27044.385286 eV Total energy + Delta-G solvation = -4006.489324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.81879 -39.87497 -38.41611 -37.20945 -35.25984 -32.90501 -32.30154 -31.81145 -31.41355 -29.70351 -29.25094 -27.68978 -25.74791 -24.57052 -23.85545 -23.02222 -22.36543 -22.17220 -20.18501 -19.97257 -18.68580 -17.69959 -16.82623 -16.53489 -16.39234 -16.25455 -16.04618 -15.72786 -15.11908 -14.82569 -14.41972 -14.12816 -13.93732 -13.69248 -13.68762 -13.59385 -13.00013 -12.90489 -12.80314 -12.64377 -12.29614 -12.18657 -12.06699 -11.87055 -11.67497 -11.36410 -11.20530 -11.16356 -11.03790 -10.96237 -10.75237 -10.51629 -10.16620 -10.11485 -9.92932 -9.75997 -9.62564 -9.51575 -9.08786 -8.63311 -8.44135 -8.23258 -6.80933 -5.67918 -3.06729 0.77257 1.21730 2.73614 2.92238 3.22537 3.38534 3.43836 3.45691 3.65223 4.44154 4.47273 4.50641 4.58269 4.72102 4.77494 4.90815 5.03739 5.06191 5.17216 5.25124 5.26599 5.30777 5.38224 5.46190 5.47161 5.54878 5.58021 5.67572 5.72386 5.74972 5.88772 5.95584 5.99847 6.11566 6.13523 6.21398 6.26961 6.32961 6.36464 6.43043 6.45733 6.61112 6.71127 6.77529 6.95103 7.00124 7.15861 7.51109 7.62256 7.64722 7.85249 8.28462 8.33266 9.20358 9.82820 10.49643 11.38143 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010316 B = 0.003485 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.521626 B = 8033.536091 C =10200.213310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.055 3.945 3 O -0.313 6.313 4 C 0.124 3.876 5 C -0.192 4.192 6 C -0.087 4.087 7 C -0.106 4.106 8 C -0.082 4.082 9 C 0.557 3.443 10 O -0.543 6.543 11 N -0.589 5.589 12 C 0.107 3.893 13 C -0.136 4.136 14 C 0.172 3.828 15 H 0.010 0.990 16 C -0.106 4.106 17 H 0.077 0.923 18 C -0.142 4.142 19 C 0.157 3.843 20 N -0.594 5.594 21 C -0.221 4.221 22 H 0.077 0.923 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.119 3.881 30 C -0.120 4.120 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.014 0.986 46 H 0.098 0.902 47 H 0.252 0.748 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 -20.057 6.348 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.227 6.227 4 C 0.079 3.921 5 C -0.211 4.211 6 C -0.105 4.105 7 C -0.125 4.125 8 C -0.085 4.085 9 C 0.345 3.655 10 O -0.421 6.421 11 N -0.320 5.320 12 C -0.015 4.015 13 C -0.176 4.176 14 C 0.064 3.936 15 H 0.027 0.973 16 C -0.126 4.126 17 H 0.095 0.905 18 C -0.181 4.181 19 C 0.032 3.968 20 N -0.319 5.319 21 C -0.349 4.349 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.004 4.004 30 C -0.139 4.139 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.032 0.968 46 H 0.116 0.884 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.095 0.905 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.161 -19.596 6.632 20.801 hybrid contribution -0.887 -0.255 -0.658 1.133 sum 1.274 -19.852 5.975 20.770 Atomic orbital electron populations 1.21783 0.92595 1.02825 1.03859 1.22797 0.96064 0.81894 1.01298 1.86120 1.18617 1.29328 1.88609 1.18786 0.82585 0.93683 0.97047 1.21380 0.94426 0.98065 1.07213 1.20876 0.94267 0.97087 0.98236 1.21091 1.00147 0.91065 1.00207 1.19727 0.92857 0.93915 1.01969 1.18248 0.82873 0.84191 0.80166 1.90754 1.26369 1.81908 1.43108 1.47501 1.36107 1.08980 1.39380 1.21665 0.89403 1.00790 0.89626 1.21264 1.02442 0.98068 0.95798 1.19447 0.90424 0.88092 0.95640 0.97256 1.22296 0.98097 0.97517 0.94650 0.90511 1.23289 1.01156 0.93275 1.00422 1.21918 0.86664 0.95913 0.92295 1.44506 1.27365 1.13854 1.46152 1.18967 0.99305 1.01846 1.14804 0.90492 1.24747 0.99187 0.96814 0.99668 1.69847 1.38801 1.07726 1.40449 0.86138 0.82937 0.76899 0.79913 1.21683 1.21715 1.20741 1.21420 1.00428 0.80823 0.97715 1.20701 0.94063 0.95752 1.03431 0.91418 0.91253 0.90398 0.91964 0.92076 0.85261 0.85154 0.84970 0.90856 0.89775 0.89811 0.93245 0.92020 0.91929 0.96773 0.88409 0.93766 0.89512 0.90537 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.05 0.41 5.46 37.16 0.20 0.61 16 3 O -0.31 -3.54 10.13 -19.45 -0.20 -3.73 16 4 C 0.12 1.45 6.68 -39.27 -0.26 1.19 16 5 C -0.19 -1.85 9.03 -39.35 -0.36 -2.20 16 6 C -0.09 -0.83 10.03 -39.66 -0.40 -1.23 16 7 C -0.11 -1.27 9.64 -39.17 -0.38 -1.65 16 8 C -0.08 -1.14 5.10 -104.99 -0.54 -1.68 16 9 C 0.56 9.27 7.30 -12.33 -0.09 9.18 16 10 O -0.54 -10.41 16.33 5.32 0.09 -10.33 16 11 N -0.59 -9.82 2.93 -176.59 -0.52 -10.34 16 12 C 0.11 1.73 5.01 -4.64 -0.02 1.70 16 13 C -0.14 -2.41 5.59 -29.07 -0.16 -2.57 16 14 C 0.17 3.47 2.66 -69.95 -0.19 3.29 16 15 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16 16 C -0.11 -1.90 3.72 -89.06 -0.33 -2.23 16 17 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 18 C -0.14 -2.68 6.46 -23.95 -0.15 -2.83 16 19 C 0.16 3.68 5.35 -2.21 -0.01 3.67 16 20 N -0.59 -14.42 3.30 -165.66 -0.55 -14.97 16 21 C -0.22 -5.86 9.57 -15.06 -0.14 -6.00 16 22 H 0.08 1.97 7.01 -52.48 -0.37 1.60 16 23 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 24 N -0.92 -26.21 10.18 55.49 0.56 -25.65 16 25 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 C 0.12 2.08 5.42 -4.77 -0.03 2.05 16 30 C -0.12 -1.58 7.34 -39.02 -0.29 -1.87 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 35 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 36 H 0.13 0.90 6.28 -52.48 -0.33 0.57 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 40 H 0.08 1.19 4.78 -51.93 -0.25 0.94 16 41 H 0.08 1.59 6.60 -51.93 -0.34 1.24 16 42 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 43 H 0.06 1.03 7.98 -51.93 -0.41 0.62 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.01 0.36 7.10 -51.93 -0.37 -0.01 16 46 H 0.10 2.61 6.09 -51.93 -0.32 2.29 16 47 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.09 1.50 6.97 -51.93 -0.36 1.14 16 49 H 0.08 1.45 6.49 -51.93 -0.34 1.11 16 50 H 0.14 1.89 6.70 -52.48 -0.35 1.54 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -31.17 384.68 -10.28 -41.45 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.59 Total: 2.67 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.86 Total: -1.48 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.50 Total: -50.95 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.11 Total: -14.06 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.17 -10.28 -41.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036830203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.691 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds