Wall clock time and date at job start Wed Apr 1 2020 02:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47148 * 2 1 4 4 C 1.35909 * 116.99920 * 180.02562 * 3 2 1 5 5 C 1.38846 * 119.98825 * 359.97438 * 4 3 2 6 6 C 1.38245 * 120.24462 * 180.02562 * 5 4 3 7 7 C 1.38009 * 120.20443 * 359.97438 * 6 5 4 8 8 C 1.39568 * 119.96591 * 359.97438 * 7 6 5 9 9 C 1.47853 * 120.11699 * 180.02562 * 8 7 6 10 10 O 1.21550 * 120.00354 * 319.06395 * 9 8 7 11 11 N 1.34776 * 120.00044 * 139.06768 * 9 8 7 12 12 C 1.46531 * 120.97744 * 354.17028 * 11 9 8 13 13 C 1.51784 * 110.13459 * 233.74830 * 12 11 9 14 14 C 1.49510 * 115.06659 * 318.38090 * 13 12 11 15 15 H 1.08999 * 105.92383 * 157.46363 * 14 13 12 16 16 C 1.52678 * 116.96863 * 40.06532 * 14 13 12 17 17 H 1.08995 * 112.03146 * 83.76207 * 16 14 13 18 18 C 1.56115 * 101.71202 * 203.76368 * 16 14 13 19 19 C 1.55095 * 101.11742 * 37.83533 * 18 16 14 20 20 N 1.46250 * 113.52304 * 272.75660 * 14 13 12 21 21 C 1.36938 * 125.96254 * 315.02428 * 20 14 13 22 22 H 1.08003 * 120.00025 * 359.97438 * 21 20 14 23 23 C 1.38810 * 120.00304 * 179.97438 * 21 20 14 24 24 N 1.31618 * 119.99904 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00246 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46868 * 90.00076 * 25 23 21 27 27 H 1.48495 * 109.47320 * 210.00092 * 25 23 21 28 28 H 1.48504 * 109.47125 * 330.00740 * 25 23 21 29 29 C 1.45041 * 120.59572 * 174.72992 * 11 9 8 30 30 C 1.38461 * 119.98416 * 180.25927 * 4 3 2 31 31 H 1.09002 * 109.47226 * 300.00255 * 1 2 3 32 32 H 1.08998 * 109.47371 * 59.99929 * 1 2 3 33 33 H 1.09000 * 109.47423 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46845 * 240.00610 * 2 1 3 35 35 H 1.08998 * 109.47371 * 120.00071 * 2 1 3 36 36 H 1.08004 * 119.88182 * 0.02562 * 5 4 3 37 37 H 1.07993 * 119.90071 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.01761 * 180.02562 * 7 6 5 39 39 H 1.08994 * 109.36377 * 113.53958 * 12 11 9 40 40 H 1.09003 * 109.35731 * 353.94839 * 12 11 9 41 41 H 1.08998 * 108.36664 * 196.93122 * 13 12 11 42 42 H 1.09009 * 108.22570 * 79.72510 * 13 12 11 43 43 H 1.09005 * 111.09601 * 155.80615 * 18 16 14 44 44 H 1.08993 * 111.09917 * 279.85985 * 18 16 14 45 45 H 1.09004 * 110.35444 * 81.82068 * 19 18 16 46 46 H 1.09005 * 110.35187 * 204.09560 * 19 18 16 47 47 H 0.97002 * 119.99984 * 179.97438 * 24 23 21 48 48 H 1.09002 * 110.02428 * 0.96160 * 29 11 9 49 49 H 1.08998 * 108.14455 * 241.30125 * 29 11 9 50 50 H 1.08004 * 120.10178 * 0.02562 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1992 0.4240 -0.0005 6 6 5.5706 0.5990 -0.0005 7 6 6.1083 1.8700 -0.0011 8 6 5.2664 2.9832 -0.0022 9 6 5.8389 4.3463 -0.0034 10 8 6.8074 4.5994 0.6862 11 7 5.2870 5.3084 -0.7690 12 6 4.2008 4.9988 -1.7026 13 6 4.5565 5.4823 -3.0967 14 6 5.2109 6.8254 -3.1537 15 1 5.7545 6.8533 -4.0980 16 6 6.2438 7.1386 -2.0739 17 1 7.2291 6.7455 -2.3243 18 6 6.2191 8.6995 -2.0551 19 6 4.7083 8.9773 -2.2686 20 7 4.2607 7.9354 -3.2168 21 6 3.1507 7.9993 -4.0161 22 1 2.9138 7.1793 -4.6779 23 6 2.3299 9.1180 -3.9759 24 7 2.6188 10.1176 -3.1698 25 14 0.8160 9.2055 -5.0668 26 1 -0.3482 8.6325 -4.3447 27 1 0.5358 10.6224 -5.4120 28 1 1.0569 8.4311 -6.3108 29 6 5.7652 6.6757 -0.6952 30 6 3.8826 2.8049 0.0049 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 3.7841 -0.5731 -0.0005 37 1 6.2231 -0.2615 -0.0001 38 1 7.1800 2.0032 -0.0015 39 1 3.2875 5.4926 -1.3710 40 1 4.0391 3.9211 -1.7242 41 1 3.6433 5.5198 -3.6906 42 1 5.2288 4.7532 -3.5492 43 1 6.5570 9.0856 -1.0934 44 1 6.8130 9.1112 -2.8711 45 1 4.1693 8.8878 -1.3254 46 1 4.5620 9.9689 -2.6971 47 1 2.0454 10.8995 -3.1419 48 1 6.5865 6.7459 0.0180 49 1 4.9399 7.3066 -0.3652 50 1 3.2260 3.6624 0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036830203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:22 Heat of formation + Delta-G solvation = -26.040776 kcal Electronic energy + Delta-G solvation = -31051.623890 eV Core-core repulsion = 27044.385286 eV Total energy + Delta-G solvation = -4007.238603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.98551 -40.93203 -39.81611 -38.16577 -36.78675 -34.68378 -33.42620 -32.93726 -32.43948 -31.00309 -30.50520 -29.27823 -27.18811 -26.14858 -24.92686 -24.26894 -23.46293 -23.10918 -21.93297 -21.17173 -20.01612 -19.04552 -18.22116 -17.97695 -17.33979 -17.11954 -17.06662 -16.95575 -16.69502 -16.19641 -15.97694 -15.67921 -15.33963 -14.73496 -14.66002 -14.52550 -14.36704 -14.15214 -14.09808 -13.92331 -13.38771 -13.30938 -13.08404 -13.07213 -13.02823 -12.82391 -12.66006 -12.62636 -12.48654 -12.20093 -11.96267 -11.90643 -11.71040 -11.64883 -11.60476 -11.42146 -11.29220 -11.01166 -10.67568 -10.02984 -9.66705 -9.26983 -8.80016 -7.75107 -5.15334 -0.15833 0.36462 1.48053 1.48812 1.57251 1.57445 1.90399 2.23270 2.51502 2.71400 3.33578 3.37318 3.63186 3.74074 3.77318 3.82827 3.99680 4.00683 4.08879 4.09447 4.15531 4.20007 4.22210 4.31214 4.38261 4.39870 4.45443 4.48903 4.57939 4.71736 4.76618 4.77889 4.87431 4.90373 4.93127 4.96267 5.06809 5.13691 5.14206 5.23468 5.27867 5.33241 5.38577 5.40231 5.49410 5.54694 5.63991 5.67288 5.84926 6.31774 6.32649 6.41470 6.97336 7.14329 7.83223 8.49595 9.29659 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010316 B = 0.003485 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.521626 B = 8033.536091 C =10200.213310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.044 3.956 3 O -0.335 6.335 4 C 0.119 3.881 5 C -0.179 4.179 6 C -0.074 4.074 7 C -0.113 4.113 8 C -0.101 4.101 9 C 0.559 3.441 10 O -0.572 6.572 11 N -0.591 5.591 12 C 0.119 3.881 13 C -0.132 4.132 14 C 0.167 3.833 15 H 0.001 0.999 16 C -0.095 4.095 17 H 0.099 0.901 18 C -0.128 4.128 19 C 0.161 3.839 20 N -0.611 5.611 21 C -0.225 4.225 22 H 0.083 0.917 23 C -0.066 4.066 24 N -0.950 5.950 25 Si 0.973 3.027 26 H -0.289 1.289 27 H -0.298 1.298 28 H -0.269 1.269 29 C 0.125 3.875 30 C -0.137 4.137 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.134 0.866 39 H 0.054 0.946 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.068 0.932 45 H -0.010 1.010 46 H 0.063 0.937 47 H 0.244 0.756 48 H 0.092 0.908 49 H 0.056 0.944 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 -23.915 6.134 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.030 4.030 3 O -0.250 6.250 4 C 0.073 3.927 5 C -0.198 4.198 6 C -0.092 4.092 7 C -0.132 4.132 8 C -0.104 4.104 9 C 0.349 3.651 10 O -0.453 6.453 11 N -0.321 5.321 12 C -0.003 4.003 13 C -0.171 4.171 14 C 0.060 3.940 15 H 0.019 0.981 16 C -0.114 4.114 17 H 0.117 0.883 18 C -0.167 4.167 19 C 0.037 3.963 20 N -0.336 5.336 21 C -0.354 4.354 22 H 0.101 0.899 23 C -0.258 4.258 24 N -0.600 5.600 25 Si 0.802 3.198 26 H -0.216 1.216 27 H -0.224 1.224 28 H -0.194 1.194 29 C 0.002 3.998 30 C -0.156 4.156 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.181 0.819 37 H 0.185 0.815 38 H 0.152 0.848 39 H 0.072 0.928 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.008 0.992 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.110 0.890 49 H 0.074 0.926 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.742 -23.496 6.407 24.508 hybrid contribution -1.084 0.829 -0.561 1.475 sum 1.658 -22.667 5.846 23.468 Atomic orbital electron populations 1.21828 0.92105 1.04179 1.02921 1.23126 0.96563 0.80437 1.02845 1.86110 1.18465 1.31842 1.88535 1.18877 0.83231 0.93675 0.96908 1.21768 0.94224 0.98873 1.04918 1.21269 0.94768 0.97103 0.96063 1.21266 1.00147 0.91536 1.00281 1.19539 0.93405 0.92784 1.04658 1.18689 0.82264 0.85081 0.79095 1.90725 1.27820 1.82617 1.44121 1.47500 1.36184 1.08739 1.39663 1.21565 0.88384 1.01915 0.88471 1.21169 1.02074 0.97162 0.96733 1.19661 0.90087 0.88178 0.96040 0.98109 1.22265 0.98368 0.96702 0.94094 0.88292 1.23149 0.97512 0.94184 1.01882 1.21673 0.89691 0.94284 0.90699 1.44744 1.27404 1.15557 1.45867 1.19327 0.99745 1.01683 1.14648 0.89875 1.25522 1.02087 0.96832 1.01382 1.70091 1.39630 1.08085 1.42148 0.85156 0.79624 0.76357 0.78698 1.21610 1.22435 1.19382 1.21250 0.99794 0.81283 0.97470 1.20587 0.93629 0.96402 1.04993 0.92249 0.92323 0.87874 0.90355 0.90367 0.81937 0.81463 0.84761 0.92809 0.87449 0.91181 0.90873 0.89706 0.91372 0.99240 0.91923 0.94604 0.89008 0.92590 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.04 0.54 5.46 71.98 0.39 0.93 16 3 O -0.33 -7.02 10.13 -92.52 -0.94 -7.96 16 4 C 0.12 2.53 6.68 22.47 0.15 2.68 16 5 C -0.18 -2.74 9.03 22.42 0.20 -2.53 16 6 C -0.07 -1.12 10.03 22.22 0.22 -0.90 16 7 C -0.11 -2.45 9.64 22.54 0.22 -2.24 16 8 C -0.10 -2.72 5.10 -20.10 -0.10 -2.82 16 9 C 0.56 18.42 7.30 86.79 0.63 19.05 16 10 O -0.57 -21.81 16.33 -3.87 -0.06 -21.87 16 11 N -0.59 -19.70 2.93 -830.89 -2.43 -22.13 16 12 C 0.12 3.83 5.01 85.97 0.43 4.26 16 13 C -0.13 -4.60 5.59 29.08 0.16 -4.44 16 14 C 0.17 6.74 2.66 43.82 0.12 6.86 16 15 H 0.00 0.05 8.08 -2.39 -0.02 0.03 16 16 C -0.09 -3.34 3.72 -9.78 -0.04 -3.38 16 17 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 18 C -0.13 -4.82 6.46 32.39 0.21 -4.61 16 19 C 0.16 7.90 5.35 86.84 0.46 8.36 16 20 N -0.61 -30.43 3.30 -678.03 -2.24 -32.67 16 21 C -0.23 -12.19 9.57 84.03 0.80 -11.38 16 22 H 0.08 4.29 7.01 -2.91 -0.02 4.27 16 23 C -0.07 -3.67 5.49 84.86 0.47 -3.21 16 24 N -0.95 -56.38 10.18 21.65 0.22 -56.16 16 25 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 26 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 29 C 0.12 4.40 5.42 86.69 0.47 4.87 16 30 C -0.14 -3.50 7.34 22.63 0.17 -3.34 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.70 7.66 -2.38 -0.02 0.68 16 35 H 0.08 0.68 7.66 -2.39 -0.02 0.66 16 36 H 0.16 1.38 6.28 -2.91 -0.02 1.36 16 37 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.05 1.94 8.13 -2.39 -0.02 1.92 16 40 H 0.11 2.99 4.78 -2.39 -0.01 2.98 16 41 H 0.07 2.65 6.60 -2.39 -0.02 2.64 16 42 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.08 2.78 7.98 -2.38 -0.02 2.76 16 44 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 45 H -0.01 -0.55 7.10 -2.39 -0.02 -0.56 16 46 H 0.06 3.52 6.09 -2.38 -0.01 3.50 16 47 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 48 H 0.09 3.15 6.97 -2.39 -0.02 3.14 16 49 H 0.06 2.20 6.49 -2.39 -0.02 2.18 16 50 H 0.13 3.51 6.70 -2.91 -0.02 3.49 16 Total: -1.00 -70.20 384.68 3.23 -66.98 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.94 Total: 19.20 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.71 Total: 7.26 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.45 Total: -110.96 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -1.00 Total: -29.83 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.20 3.23 -66.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036830203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.934 kcal (2) G-P(sol) polarization free energy of solvation -70.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds