Wall clock time and date at job start Wed Apr 1 2020 02:59:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 O 1.42900 * 109.47004 * 2 1
4 4 C 1.35711 * 116.99758 * 179.97438 * 3 2 1
5 5 C 1.38995 * 119.91253 * 359.72271 * 4 3 2
6 6 C 1.37695 * 120.08757 * 180.27254 * 5 4 3
7 7 C 1.39736 * 119.91341 * 0.02841 * 6 5 4
8 8 C 1.47597 * 120.08953 * 179.97438 * 7 6 5
9 9 O 1.21582 * 120.00516 * 126.31028 * 8 7 6
10 10 N 1.34776 * 119.99865 * 306.31345 * 8 7 6
11 11 C 1.44221 * 115.76151 * 179.65642 * 10 8 7
12 12 C 1.52195 * 112.64165 * 187.31440 * 11 10 8
13 13 C 1.50992 * 111.29877 * 322.94754 * 12 11 10
14 14 H 1.09005 * 108.32276 * 181.21744 * 13 12 11
15 15 C 1.53977 * 111.97403 * 61.02506 * 13 12 11
16 16 H 1.09002 * 112.41913 * 74.98833 * 15 13 12
17 17 C 1.56263 * 100.39732 * 194.89423 * 15 13 12
18 18 C 1.54653 * 102.20688 * 39.14864 * 17 15 13
19 19 N 1.47662 * 106.93582 * 335.91854 * 18 17 15
20 20 C 1.36935 * 126.19621 * 178.34560 * 19 18 17
21 21 H 1.08001 * 119.99751 * 179.97438 * 20 19 18
22 22 C 1.38808 * 120.00176 * 359.97253 * 20 19 18
23 23 N 1.31620 * 120.00249 * 0.02562 * 22 20 19
24 24 Si 1.86801 * 119.99982 * 179.97438 * 22 20 19
25 25 H 1.48504 * 109.47063 * 90.00543 * 24 22 20
26 26 H 1.48502 * 109.47101 * 210.00087 * 24 22 20
27 27 H 1.48493 * 109.47136 * 330.00418 * 24 22 20
28 28 C 1.43519 * 115.76413 * 359.89727 * 10 8 7
29 29 C 1.39728 * 119.82161 * 359.97408 * 7 6 5
30 30 C 1.37702 * 119.91497 * 0.02562 * 29 7 6
31 31 H 1.08998 * 109.47292 * 300.00118 * 1 2 3
32 32 H 1.09006 * 109.46977 * 59.99784 * 1 2 3
33 33 H 1.08994 * 109.47287 * 179.97438 * 1 2 3
34 34 H 1.08995 * 109.46797 * 239.99847 * 2 1 3
35 35 H 1.08994 * 109.46618 * 120.00157 * 2 1 3
36 36 H 1.08000 * 119.95639 * 0.27965 * 5 4 3
37 37 H 1.08000 * 120.04391 * 180.02562 * 6 5 4
38 38 H 1.09001 * 108.82513 * 307.03801 * 11 10 8
39 39 H 1.08995 * 108.82916 * 65.35822 * 11 10 8
40 40 H 1.09001 * 108.54058 * 202.99685 * 12 11 10
41 41 H 1.09000 * 109.99148 * 83.85147 * 12 11 10
42 42 H 1.09000 * 110.86017 * 157.32356 * 17 15 13
43 43 H 1.08999 * 110.85794 * 280.76982 * 17 15 13
44 44 H 1.08996 * 109.96807 * 95.29055 * 18 17 15
45 45 H 1.08995 * 109.96682 * 216.51439 * 18 17 15
46 46 H 0.96990 * 120.00508 * 179.97438 * 23 22 20
47 47 H 1.08994 * 108.17080 * 302.27864 * 28 10 8
48 48 H 1.09005 * 108.16591 * 58.86573 * 28 10 8
49 49 H 1.08003 * 120.04455 * 180.02562 * 29 7 6
50 50 H 1.07998 * 119.95954 * 179.97438 * 30 29 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.3518 1.5251 0.0005
5 6 4.1968 0.4215 0.0069
6 6 5.5624 0.5977 0.0131
7 6 6.0985 1.8881 0.0137
8 6 7.5617 2.0816 0.0209
9 8 8.0872 2.7778 -0.8260
10 7 8.3155 1.4862 0.9664
11 6 9.7343 1.7309 0.8829
12 6 10.5329 0.8894 1.8680
13 6 9.7983 0.7337 3.1779
14 1 10.4202 0.1442 3.8516
15 6 8.4435 0.0243 2.9979
16 1 8.5542 -1.0475 2.8328
17 6 7.7680 0.3547 4.3676
18 6 8.2144 1.8157 4.6084
19 7 9.4584 2.0177 3.8391
20 6 10.1725 3.1825 3.7475
21 1 11.0738 3.2181 3.1536
22 6 9.7379 4.3176 4.4180
23 7 8.6397 4.2742 5.1422
24 14 10.7124 5.9064 4.2937
25 1 10.2184 6.7012 3.1406
26 1 10.5432 6.6900 5.5437
27 1 12.1502 5.5911 4.0979
28 6 7.6018 0.6873 1.9215
29 6 5.2456 2.9949 0.0073
30 6 3.8810 2.8103 0.0011
31 1 -0.3634 0.5138 0.8899
32 1 -0.3633 0.5139 -0.8900
33 1 -0.3633 -1.0276 -0.0005
34 1 1.8933 -0.5138 -0.8899
35 1 1.8933 -0.5138 0.8899
36 1 3.7817 -0.5756 0.0068
37 1 6.2183 -0.2603 0.0176
38 1 10.0749 1.4855 -0.1231
39 1 9.9203 2.7890 1.0666
40 1 11.4866 1.3839 2.0526
41 1 10.7214 -0.0983 1.4472
42 1 6.6827 0.2881 4.2912
43 1 8.1411 -0.3028 5.1529
44 1 7.4442 2.5027 4.2580
45 1 8.4021 1.9773 5.6699
46 1 8.3362 5.0671 5.6110
47 1 6.8628 1.3218 2.4108
48 1 7.0668 -0.0928 1.3799
49 1 5.6561 3.9939 0.0073
50 1 3.2212 3.6653 -0.0034
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001036883099.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:59:33
Heat of formation + Delta-G solvation = -24.494185 kcal
Electronic energy + Delta-G solvation = -31590.533568 eV
Core-core repulsion = 27583.362030 eV
Total energy + Delta-G solvation = -4007.171538 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-42.05572 -40.93842 -39.73006 -38.18830 -36.46747 -34.57030 -33.98062 -32.79752
-32.04381 -31.28928 -30.64988 -29.22433 -26.91301 -25.59975 -25.25616 -24.48705
-23.62433 -22.69700 -21.74749 -21.12992 -19.59122 -19.23272 -18.44249 -18.30993
-17.57986 -17.17410 -17.02270 -16.76973 -16.54806 -15.91162 -15.84542 -15.42347
-15.24298 -15.01288 -14.69402 -14.48199 -14.43371 -14.19236 -13.93341 -13.82060
-13.63988 -13.29296 -13.17613 -13.07440 -12.97737 -12.81545 -12.75838 -12.59746
-12.42952 -12.23365 -12.02639 -11.76261 -11.61720 -11.55851 -11.45081 -11.36214
-11.31002 -10.84082 -10.67524 -10.09807 -9.49039 -9.19625 -8.80369 -7.81123
-5.10919 0.03598 0.29519 1.39314 1.42317 1.48055 1.58806 2.12562
2.21768 2.48652 2.71772 3.37419 3.42717 3.57528 3.72171 3.78602
3.83737 3.90079 4.06872 4.12359 4.14484 4.20479 4.21076 4.23910
4.35650 4.42913 4.50443 4.54017 4.56253 4.59929 4.79955 4.82487
4.87023 4.90605 4.95582 4.99386 5.05594 5.07411 5.10514 5.18567
5.20107 5.30998 5.32939 5.36969 5.42671 5.54184 5.61629 5.72150
5.80111 5.82928 6.23402 6.37310 6.40709 7.13400 7.15074 7.83496
8.49353 9.29843
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.012665 B = 0.003354 C = 0.003277
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2210.280545 B = 8346.570387 C = 8543.206747
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.040 3.960
3 O -0.327 6.327
4 C 0.147 3.853
5 C -0.201 4.201
6 C -0.042 4.042
7 C -0.178 4.178
8 C 0.542 3.458
9 O -0.587 6.587
10 N -0.569 5.569
11 C 0.142 3.858
12 C -0.115 4.115
13 C 0.151 3.849
14 H 0.037 0.963
15 C -0.097 4.097
16 H 0.135 0.865
17 C -0.126 4.126
18 C 0.186 3.814
19 N -0.610 5.610
20 C -0.207 4.207
21 H 0.078 0.922
22 C -0.070 4.070
23 N -0.950 5.950
24 Si 0.957 3.043
25 H -0.300 1.300
26 H -0.296 1.296
27 H -0.268 1.268
28 C 0.125 3.875
29 C -0.050 4.050
30 C -0.163 4.163
31 H 0.060 0.940
32 H 0.061 0.939
33 H 0.102 0.898
34 H 0.079 0.921
35 H 0.078 0.922
36 H 0.170 0.830
37 H 0.160 0.840
38 H 0.064 0.936
39 H 0.025 0.975
40 H 0.065 0.935
41 H 0.105 0.895
42 H 0.082 0.918
43 H 0.079 0.921
44 H 0.002 0.998
45 H 0.001 0.999
46 H 0.240 0.760
47 H 0.040 0.960
48 H 0.097 0.903
49 H 0.114 0.886
50 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.219 -17.803 -9.652 24.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.034 4.034
3 O -0.241 6.241
4 C 0.101 3.899
5 C -0.219 4.219
6 C -0.060 4.060
7 C -0.181 4.181
8 C 0.331 3.669
9 O -0.469 6.469
10 N -0.298 5.298
11 C 0.019 3.981
12 C -0.154 4.154
13 C 0.046 3.954
14 H 0.055 0.945
15 C -0.116 4.116
16 H 0.153 0.847
17 C -0.164 4.164
18 C 0.061 3.939
19 N -0.336 5.336
20 C -0.337 4.337
21 H 0.096 0.904
22 C -0.262 4.262
23 N -0.600 5.600
24 Si 0.787 3.213
25 H -0.228 1.228
26 H -0.222 1.222
27 H -0.192 1.192
28 C 0.003 3.997
29 C -0.069 4.069
30 C -0.182 4.182
31 H 0.079 0.921
32 H 0.080 0.920
33 H 0.120 0.880
34 H 0.097 0.903
35 H 0.096 0.904
36 H 0.188 0.812
37 H 0.177 0.823
38 H 0.083 0.917
39 H 0.044 0.956
40 H 0.083 0.917
41 H 0.123 0.877
42 H 0.101 0.899
43 H 0.098 0.902
44 H 0.020 0.980
45 H 0.019 0.981
46 H 0.049 0.951
47 H 0.058 0.942
48 H 0.115 0.885
49 H 0.133 0.867
50 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -13.037 -17.156 -9.915 23.719
hybrid contribution 0.762 2.062 0.428 2.240
sum -12.274 -15.094 -9.487 21.645
Atomic orbital electron populations
1.21821 0.91677 1.04254 1.03052 1.23194 0.96842 0.80360 1.02997
1.86044 1.18262 1.32024 1.87782 1.19243 0.83072 0.93980 0.93622
1.21447 0.92959 0.99392 1.08098 1.21278 0.95495 0.95122 0.94102
1.19726 0.91620 0.95975 1.10801 1.18909 0.87899 0.78997 0.81074
1.90708 1.75106 1.40683 1.40435 1.46348 1.07028 1.48372 1.28037
1.20403 0.79823 0.98828 0.99069 1.21287 0.98467 1.00855 0.94756
1.20906 0.94756 0.87096 0.92671 0.94494 1.22514 0.94748 1.00641
0.93709 0.84712 1.23182 1.00478 0.95949 0.96828 1.21003 0.87197
0.92443 0.93243 1.45008 1.26576 1.06808 1.55229 1.19209 1.03992
0.87506 1.22999 0.90434 1.25403 0.99142 1.00564 1.01134 1.70142
1.25019 1.27898 1.36981 0.85376 0.78894 0.80939 0.76068 1.22788
1.22232 1.19243 1.20994 0.93876 0.94343 0.90471 1.20899 0.92786
0.98052 0.95130 1.20404 0.94048 0.96341 1.07402 0.92133 0.91960
0.87959 0.90278 0.90408 0.81242 0.82315 0.91750 0.95640 0.91666
0.87708 0.89907 0.90234 0.98002 0.98124 0.95055 0.94192 0.88510
0.86745 0.83944
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.35 10.28 71.98 0.74 -0.61 16
2 C 0.04 0.47 5.45 71.98 0.39 0.86 16
3 O -0.33 -6.60 10.12 -90.33 -0.91 -7.52 16
4 C 0.15 3.35 6.70 22.63 0.15 3.50 16
5 C -0.20 -3.76 9.01 22.32 0.20 -3.56 16
6 C -0.04 -0.94 7.95 22.50 0.18 -0.76 16
7 C -0.18 -5.66 4.69 -20.09 -0.09 -5.76 16
8 C 0.54 21.01 7.02 86.71 0.61 21.62 16
9 O -0.59 -27.19 16.64 -3.97 -0.07 -27.26 16
10 N -0.57 -20.47 3.19 -842.24 -2.69 -23.16 16
11 C 0.14 5.33 5.06 86.54 0.44 5.77 16
12 C -0.12 -3.70 5.20 29.67 0.15 -3.55 16
13 C 0.15 5.42 2.98 44.31 0.13 5.56 16
14 H 0.04 1.30 8.14 -2.38 -0.02 1.29 16
15 C -0.10 -2.70 3.75 -9.70 -0.04 -2.73 16
16 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16
17 C -0.13 -4.01 6.15 32.29 0.20 -3.81 16
18 C 0.19 8.84 4.82 86.72 0.42 9.26 16
19 N -0.61 -29.53 3.08 -669.17 -2.06 -31.59 16
20 C -0.21 -11.45 8.89 84.03 0.75 -10.70 16
21 H 0.08 4.16 7.01 -2.91 -0.02 4.14 16
22 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16
23 N -0.95 -58.52 10.41 21.65 0.23 -58.29 16
24 Si 0.96 48.23 29.55 68.60 2.03 50.26 16
25 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16
26 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16
27 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16
28 C 0.13 3.72 4.14 86.56 0.36 4.08 16
29 C -0.05 -1.60 9.75 22.50 0.22 -1.38 16
30 C -0.16 -4.39 9.97 22.33 0.22 -4.16 16
31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16
32 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16
33 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16
34 H 0.08 0.68 7.66 -2.39 -0.02 0.66 16
35 H 0.08 0.72 7.64 -2.39 -0.02 0.70 16
36 H 0.17 1.84 6.28 -2.91 -0.02 1.82 16
37 H 0.16 2.68 6.32 -2.91 -0.02 2.66 16
38 H 0.06 2.25 7.88 -2.39 -0.02 2.24 16
39 H 0.03 1.19 7.49 -2.39 -0.02 1.18 16
40 H 0.06 2.23 7.48 -2.39 -0.02 2.21 16
41 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16
42 H 0.08 2.31 7.81 -2.39 -0.02 2.29 16
43 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
44 H 0.00 0.10 7.13 -2.39 -0.02 0.08 16
45 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16
46 H 0.24 14.66 8.31 -92.72 -0.77 13.89 16
47 H 0.04 1.42 6.27 -2.39 -0.01 1.41 16
48 H 0.10 2.06 4.79 -2.38 -0.01 2.05 16
49 H 0.11 4.01 8.06 -2.91 -0.02 3.98 16
50 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16
Total: -1.00 -78.67 384.38 2.96 -75.71
By element:
Atomic # 1 Polarization: 10.91 SS G_CDS: 0.94 Total: 11.85 kcal
Atomic # 6 Polarization: 4.50 SS G_CDS: 5.50 Total: 10.00 kcal
Atomic # 7 Polarization: -108.52 SS G_CDS: -4.52 Total: -113.04 kcal
Atomic # 8 Polarization: -33.80 SS G_CDS: -0.98 Total: -34.78 kcal
Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal
Total: -78.67 2.96 -75.71 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036883099.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.214 kcal
(2) G-P(sol) polarization free energy of solvation -78.669 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.456 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.708 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.494 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds