Wall clock time and date at job start Wed Apr 1 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42900 * 109.47164 * 2 1 4 4 C 1.35714 * 117.00299 * 179.97438 * 3 2 1 5 5 C 1.38992 * 119.90762 * 359.72795 * 4 3 2 6 6 C 1.37707 * 120.08473 * 179.75940 * 5 4 3 7 7 C 1.39726 * 119.91049 * 0.53415 * 6 5 4 8 8 C 1.47609 * 120.08821 * 179.74190 * 7 6 5 9 9 O 1.21580 * 119.99556 * 314.36158 * 8 7 6 10 10 N 1.34771 * 119.99925 * 134.36828 * 8 7 6 11 11 C 1.46602 * 119.68781 * 3.94073 * 10 8 7 12 12 C 1.53535 * 110.81479 * 227.73651 * 11 10 8 13 13 C 1.51524 * 107.42828 * 309.21867 * 12 11 10 14 14 H 1.09004 * 108.81326 * 306.41137 * 13 12 11 15 15 C 1.55363 * 107.78024 * 64.71207 * 13 12 11 16 16 H 1.08996 * 112.27260 * 50.83994 * 15 13 12 17 17 C 1.53738 * 100.22427 * 169.06432 * 15 13 12 18 18 C 1.55290 * 101.84044 * 320.91028 * 17 15 13 19 19 N 1.45470 * 117.34349 * 181.74923 * 13 12 11 20 20 C 1.36935 * 126.40187 * 30.65263 * 19 13 12 21 21 H 1.07998 * 120.00256 * 3.92538 * 20 19 13 22 22 C 1.38816 * 119.99843 * 183.93535 * 20 19 13 23 23 N 1.31612 * 119.99731 * 352.15371 * 22 20 19 24 24 Si 1.86798 * 119.99922 * 172.15526 * 22 20 19 25 25 H 1.48510 * 109.46791 * 94.98638 * 24 22 20 26 26 H 1.48500 * 109.46885 * 214.98245 * 24 22 20 27 27 H 1.48498 * 109.47155 * 334.98670 * 24 22 20 28 28 C 1.47726 * 119.68163 * 184.22106 * 10 8 7 29 29 C 1.39730 * 119.82734 * 359.71840 * 7 6 5 30 30 C 1.37702 * 119.91323 * 0.02562 * 29 7 6 31 31 H 1.09002 * 109.47493 * 60.00103 * 1 2 3 32 32 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.47287 * 300.00153 * 1 2 3 34 34 H 1.08999 * 109.47386 * 239.99952 * 2 1 3 35 35 H 1.09002 * 109.47493 * 119.99896 * 2 1 3 36 36 H 1.08001 * 119.96128 * 359.97438 * 5 4 3 37 37 H 1.07995 * 120.04294 * 180.26920 * 6 5 4 38 38 H 1.08994 * 109.24880 * 348.10877 * 11 10 8 39 39 H 1.09000 * 109.25187 * 107.53607 * 11 10 8 40 40 H 1.09003 * 109.95910 * 189.66764 * 12 11 10 41 41 H 1.08993 * 109.78319 * 68.66932 * 12 11 10 42 42 H 1.08997 * 110.95733 * 79.04485 * 17 15 13 43 43 H 1.09004 * 110.95480 * 202.77785 * 17 15 13 44 44 H 1.09001 * 109.92105 * 141.82968 * 18 17 15 45 45 H 1.09004 * 109.92179 * 263.13599 * 18 17 15 46 46 H 0.97000 * 119.99835 * 180.02562 * 23 22 20 47 47 H 1.09001 * 110.06692 * 247.14670 * 28 10 8 48 48 H 1.08993 * 110.07084 * 8.61350 * 28 10 8 49 49 H 1.08005 * 120.04773 * 180.02562 * 29 7 6 50 50 H 1.08000 * 119.95962 * 180.02562 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5251 0.0005 5 6 4.1967 0.4216 0.0068 6 6 5.5624 0.5978 0.0023 7 6 6.0984 1.8882 0.0029 8 6 7.5618 2.0816 0.0039 9 8 8.2603 1.4313 0.7571 10 7 8.1234 2.9791 -0.8300 11 6 7.2690 3.8209 -1.6729 12 6 7.7685 3.8243 -3.1248 13 6 9.2482 4.1491 -3.0948 14 1 9.3940 5.0735 -2.5359 15 6 9.9739 2.9881 -2.3605 16 1 9.7044 2.0119 -2.7635 17 6 11.4373 3.3382 -2.6760 18 6 11.3387 3.8234 -4.1478 19 7 9.9368 4.2468 -4.3725 20 6 9.3912 4.6541 -5.5606 21 1 8.3693 5.0019 -5.5946 22 6 10.1516 4.6196 -6.7215 23 7 11.4371 4.3446 -6.6582 24 14 9.3502 4.9637 -8.3734 25 1 9.5284 6.3965 -8.7212 26 1 9.9845 4.1185 -9.4168 27 1 7.9009 4.6497 -8.2955 28 6 9.5944 3.1009 -0.8905 29 6 5.2456 2.9950 0.0019 30 6 3.8810 2.8105 0.0010 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.7816 -0.5755 0.0116 37 1 6.2183 -0.2602 0.0028 38 1 6.2487 3.4385 -1.6456 39 1 7.2800 4.8414 -1.2901 40 1 7.2345 4.5806 -3.7002 41 1 7.6136 2.8418 -3.5705 42 1 11.7962 4.1360 -2.0258 43 1 12.0744 2.4572 -2.5979 44 1 12.0112 4.6664 -4.3069 45 1 11.5935 3.0085 -4.8255 46 1 11.9685 4.3209 -7.4693 47 1 9.9061 4.0684 -0.4968 48 1 10.0600 2.2977 -0.3195 49 1 5.6560 3.9940 0.0019 50 1 3.2211 3.6654 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036883101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:41 Heat of formation + Delta-G solvation = -9.288889 kcal Electronic energy + Delta-G solvation = -30414.383044 eV Core-core repulsion = 26407.870857 eV Total energy + Delta-G solvation = -4006.512187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.86081 -39.96948 -38.42631 -37.27288 -35.40702 -32.82548 -32.37624 -31.57998 -31.34835 -30.40097 -29.25016 -27.96506 -25.19502 -24.50109 -24.01589 -22.76467 -22.39634 -21.84582 -20.19859 -19.90343 -19.20782 -18.53660 -17.38020 -16.51043 -16.39747 -16.30087 -15.88535 -15.18288 -14.93516 -14.80740 -14.49991 -14.13284 -13.95214 -13.84467 -13.75245 -13.70503 -13.18907 -12.99766 -12.97557 -12.69034 -12.48458 -12.40504 -12.17283 -12.05902 -11.67019 -11.45458 -11.40189 -11.11708 -11.06555 -10.86859 -10.75262 -10.69755 -10.17210 -10.09164 -9.92102 -9.70994 -9.65344 -9.47900 -9.23620 -8.59688 -8.56128 -8.39350 -6.84510 -5.73867 -3.04853 0.84259 1.07230 2.72337 2.79013 3.05664 3.38724 3.44532 3.46364 3.56284 4.42374 4.45982 4.48639 4.49347 4.52986 4.67461 4.79682 4.93816 4.99842 5.05552 5.13105 5.18817 5.26883 5.34614 5.34728 5.36110 5.53240 5.57536 5.59426 5.62749 5.72101 5.80796 5.84795 5.91384 6.01070 6.03827 6.13850 6.17491 6.19264 6.24281 6.34583 6.38690 6.50727 6.61701 6.64757 6.84001 7.04469 7.06653 7.48508 7.54445 7.61886 7.80046 8.21938 8.23335 9.18302 9.82373 10.50918 11.39420 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.002686 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.179336 B =10423.305225 C =12051.947002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.148 3.852 5 C -0.215 4.215 6 C -0.026 4.026 7 C -0.162 4.162 8 C 0.560 3.440 9 O -0.545 6.545 10 N -0.599 5.599 11 C 0.099 3.901 12 C -0.130 4.130 13 C 0.168 3.832 14 H 0.019 0.981 15 C -0.124 4.124 16 H 0.079 0.921 17 C -0.136 4.136 18 C 0.177 3.823 19 N -0.595 5.595 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.127 3.873 29 C -0.050 4.050 30 C -0.158 4.158 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.039 0.961 45 H 0.053 0.947 46 H 0.252 0.748 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.140 0.860 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.190 -6.650 15.103 23.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.227 6.227 4 C 0.102 3.898 5 C -0.234 4.234 6 C -0.045 4.045 7 C -0.165 4.165 8 C 0.348 3.652 9 O -0.424 6.424 10 N -0.331 5.331 11 C -0.024 4.024 12 C -0.169 4.169 13 C 0.060 3.940 14 H 0.037 0.963 15 C -0.144 4.144 16 H 0.098 0.902 17 C -0.175 4.175 18 C 0.052 3.948 19 N -0.319 5.319 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.005 3.995 29 C -0.068 4.068 30 C -0.177 4.177 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.088 0.912 48 H 0.108 0.892 49 H 0.158 0.842 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.894 -6.797 15.236 23.744 hybrid contribution -0.287 -0.011 -1.100 1.137 sum -17.182 -6.808 14.136 23.268 Atomic orbital electron populations 1.21783 0.92586 1.02968 1.03623 1.22845 0.96013 0.81755 1.01694 1.86037 1.19007 1.29645 1.88027 1.19206 0.82278 0.94159 0.94108 1.21170 0.93911 0.98284 1.10049 1.20925 0.94267 0.96176 0.93127 1.19815 0.93302 0.94395 1.09038 1.18277 0.87336 0.79305 0.80252 1.90761 1.63639 1.47670 1.40347 1.48233 1.07550 1.37585 1.39710 1.22135 0.94529 0.94272 0.91491 1.21824 0.98352 1.02813 0.93902 1.20626 0.90730 0.94061 0.88599 0.96326 1.22625 0.97520 1.00430 0.93829 0.90243 1.22713 0.94519 1.00105 1.00127 1.21529 0.85693 0.98472 0.89078 1.44198 1.06412 1.77475 1.03832 1.18975 0.96456 1.36291 0.83694 0.90379 1.24801 0.95802 1.01980 0.97767 1.69955 1.04682 1.55188 1.26799 0.86182 0.78438 0.77526 0.84140 1.21718 1.21688 1.20643 1.21649 0.78119 1.02363 0.97368 1.21233 0.92149 0.98668 0.94765 1.20353 0.94907 0.94988 1.07423 0.91390 0.90277 0.91486 0.91717 0.91816 0.84954 0.84927 0.89135 0.91548 0.90485 0.91416 0.92282 0.92051 0.94282 0.92882 0.93763 0.91221 0.89216 0.84238 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.28 37.15 0.38 -0.36 16 2 C 0.05 0.34 5.45 37.15 0.20 0.54 16 3 O -0.31 -2.99 10.12 -18.85 -0.19 -3.18 16 4 C 0.15 1.53 6.70 -39.02 -0.26 1.27 16 5 C -0.22 -2.14 9.01 -39.50 -0.36 -2.49 16 6 C -0.03 -0.30 9.68 -39.22 -0.38 -0.68 16 7 C -0.16 -2.07 5.10 -104.96 -0.54 -2.61 16 8 C 0.56 8.59 7.26 -12.44 -0.09 8.50 16 9 O -0.55 -9.99 16.37 5.29 0.09 -9.90 16 10 N -0.60 -8.84 3.01 -173.94 -0.52 -9.36 16 11 C 0.10 1.31 4.88 -3.71 -0.02 1.29 16 12 C -0.13 -2.18 5.48 -27.20 -0.15 -2.33 16 13 C 0.17 3.32 2.57 -67.98 -0.17 3.14 16 14 H 0.02 0.39 7.92 -51.93 -0.41 -0.02 16 15 C -0.12 -2.20 2.85 -89.37 -0.26 -2.46 16 16 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 17 C -0.14 -2.51 6.54 -25.13 -0.16 -2.68 16 18 C 0.18 4.23 5.45 -1.92 -0.01 4.22 16 19 N -0.59 -14.70 3.35 -163.09 -0.55 -15.25 16 20 C -0.23 -6.10 9.85 -15.06 -0.15 -6.25 16 21 H 0.08 2.02 7.28 -52.49 -0.38 1.64 16 22 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 23 N -0.92 -26.78 10.49 55.49 0.58 -26.20 16 24 Si 0.91 21.81 29.56 -169.99 -5.02 16.79 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.13 1.96 5.95 -3.76 -0.02 1.93 16 29 C -0.05 -0.53 7.29 -39.22 -0.29 -0.81 16 30 C -0.16 -1.58 9.97 -39.49 -0.39 -1.97 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 34 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 35 H 0.06 0.35 7.64 -51.93 -0.40 -0.04 16 36 H 0.13 1.00 6.28 -52.49 -0.33 0.67 16 37 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.09 1.06 4.41 -51.93 -0.23 0.83 16 39 H 0.07 0.79 8.09 -51.93 -0.42 0.36 16 40 H 0.08 1.30 7.64 -51.93 -0.40 0.90 16 41 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 42 H 0.06 1.01 8.11 -51.93 -0.42 0.58 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.04 1.02 7.79 -51.93 -0.40 0.62 16 45 H 0.05 1.41 7.22 -51.93 -0.37 1.04 16 46 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 48 H 0.09 1.42 7.02 -51.93 -0.36 1.06 16 49 H 0.14 1.27 6.54 -52.48 -0.34 0.93 16 50 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -32.49 388.95 -10.32 -42.80 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.81 Total: 0.48 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.76 Total: -2.05 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.49 Total: -50.81 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.10 Total: -13.08 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.49 -10.32 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036883101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.515 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds