Wall clock time and date at job start Wed Apr 1 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42900 * 109.47164 * 2 1 4 4 C 1.35714 * 117.00299 * 179.97438 * 3 2 1 5 5 C 1.38992 * 119.90762 * 359.72795 * 4 3 2 6 6 C 1.37707 * 120.08473 * 179.75940 * 5 4 3 7 7 C 1.39726 * 119.91049 * 0.53415 * 6 5 4 8 8 C 1.47609 * 120.08821 * 179.74190 * 7 6 5 9 9 O 1.21580 * 119.99556 * 314.36158 * 8 7 6 10 10 N 1.34771 * 119.99925 * 134.36828 * 8 7 6 11 11 C 1.46602 * 119.68781 * 3.94073 * 10 8 7 12 12 C 1.53535 * 110.81479 * 227.73651 * 11 10 8 13 13 C 1.51524 * 107.42828 * 309.21867 * 12 11 10 14 14 H 1.09004 * 108.81326 * 306.41137 * 13 12 11 15 15 C 1.55363 * 107.78024 * 64.71207 * 13 12 11 16 16 H 1.08996 * 112.27260 * 50.83994 * 15 13 12 17 17 C 1.53738 * 100.22427 * 169.06432 * 15 13 12 18 18 C 1.55290 * 101.84044 * 320.91028 * 17 15 13 19 19 N 1.45470 * 117.34349 * 181.74923 * 13 12 11 20 20 C 1.36935 * 126.40187 * 30.65263 * 19 13 12 21 21 H 1.07998 * 120.00256 * 3.92538 * 20 19 13 22 22 C 1.38816 * 119.99843 * 183.93535 * 20 19 13 23 23 N 1.31612 * 119.99731 * 352.15371 * 22 20 19 24 24 Si 1.86798 * 119.99922 * 172.15526 * 22 20 19 25 25 H 1.48510 * 109.46791 * 94.98638 * 24 22 20 26 26 H 1.48500 * 109.46885 * 214.98245 * 24 22 20 27 27 H 1.48498 * 109.47155 * 334.98670 * 24 22 20 28 28 C 1.47726 * 119.68163 * 184.22106 * 10 8 7 29 29 C 1.39730 * 119.82734 * 359.71840 * 7 6 5 30 30 C 1.37702 * 119.91323 * 0.02562 * 29 7 6 31 31 H 1.09002 * 109.47493 * 60.00103 * 1 2 3 32 32 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.47287 * 300.00153 * 1 2 3 34 34 H 1.08999 * 109.47386 * 239.99952 * 2 1 3 35 35 H 1.09002 * 109.47493 * 119.99896 * 2 1 3 36 36 H 1.08001 * 119.96128 * 359.97438 * 5 4 3 37 37 H 1.07995 * 120.04294 * 180.26920 * 6 5 4 38 38 H 1.08994 * 109.24880 * 348.10877 * 11 10 8 39 39 H 1.09000 * 109.25187 * 107.53607 * 11 10 8 40 40 H 1.09003 * 109.95910 * 189.66764 * 12 11 10 41 41 H 1.08993 * 109.78319 * 68.66932 * 12 11 10 42 42 H 1.08997 * 110.95733 * 79.04485 * 17 15 13 43 43 H 1.09004 * 110.95480 * 202.77785 * 17 15 13 44 44 H 1.09001 * 109.92105 * 141.82968 * 18 17 15 45 45 H 1.09004 * 109.92179 * 263.13599 * 18 17 15 46 46 H 0.97000 * 119.99835 * 180.02562 * 23 22 20 47 47 H 1.09001 * 110.06692 * 247.14670 * 28 10 8 48 48 H 1.08993 * 110.07084 * 8.61350 * 28 10 8 49 49 H 1.08005 * 120.04773 * 180.02562 * 29 7 6 50 50 H 1.08000 * 119.95962 * 180.02562 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5251 0.0005 5 6 4.1967 0.4216 0.0068 6 6 5.5624 0.5978 0.0023 7 6 6.0984 1.8882 0.0029 8 6 7.5618 2.0816 0.0039 9 8 8.2603 1.4313 0.7571 10 7 8.1234 2.9791 -0.8300 11 6 7.2690 3.8209 -1.6729 12 6 7.7685 3.8243 -3.1248 13 6 9.2482 4.1491 -3.0948 14 1 9.3940 5.0735 -2.5359 15 6 9.9739 2.9881 -2.3605 16 1 9.7044 2.0119 -2.7635 17 6 11.4373 3.3382 -2.6760 18 6 11.3387 3.8234 -4.1478 19 7 9.9368 4.2468 -4.3725 20 6 9.3912 4.6541 -5.5606 21 1 8.3693 5.0019 -5.5946 22 6 10.1516 4.6196 -6.7215 23 7 11.4371 4.3446 -6.6582 24 14 9.3502 4.9637 -8.3734 25 1 9.5284 6.3965 -8.7212 26 1 9.9845 4.1185 -9.4168 27 1 7.9009 4.6497 -8.2955 28 6 9.5944 3.1009 -0.8905 29 6 5.2456 2.9950 0.0019 30 6 3.8810 2.8105 0.0010 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.7816 -0.5755 0.0116 37 1 6.2183 -0.2602 0.0028 38 1 6.2487 3.4385 -1.6456 39 1 7.2800 4.8414 -1.2901 40 1 7.2345 4.5806 -3.7002 41 1 7.6136 2.8418 -3.5705 42 1 11.7962 4.1360 -2.0258 43 1 12.0744 2.4572 -2.5979 44 1 12.0112 4.6664 -4.3069 45 1 11.5935 3.0085 -4.8255 46 1 11.9685 4.3209 -7.4693 47 1 9.9061 4.0684 -0.4968 48 1 10.0600 2.2977 -0.3195 49 1 5.6560 3.9940 0.0019 50 1 3.2211 3.6654 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036883101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:40 Heat of formation + Delta-G solvation = -27.781755 kcal Electronic energy + Delta-G solvation = -30415.184955 eV Core-core repulsion = 26407.870857 eV Total energy + Delta-G solvation = -4007.314098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.88839 -40.92888 -39.77779 -38.16968 -36.85597 -34.58063 -33.08218 -32.96600 -32.25709 -31.52359 -30.64458 -29.41475 -26.77817 -25.66021 -25.00762 -23.87859 -23.62666 -22.61996 -21.88764 -21.30344 -20.46586 -19.26259 -18.77394 -17.96798 -17.35026 -17.09074 -16.94123 -16.88836 -16.19695 -16.00731 -15.67060 -15.65070 -15.26669 -14.80863 -14.74410 -14.62176 -14.34695 -14.18006 -14.04495 -13.81981 -13.64229 -13.34835 -13.26261 -13.15423 -13.06170 -12.82703 -12.72765 -12.64798 -12.40495 -12.11588 -12.00126 -11.79181 -11.77583 -11.66635 -11.58069 -11.51254 -11.04270 -10.88908 -10.66091 -10.05240 -9.75087 -9.24204 -8.86507 -7.84053 -5.16086 -0.01613 0.28851 1.46351 1.47828 1.56735 1.61305 1.94548 2.18484 2.51239 2.69831 3.34841 3.38735 3.55597 3.73092 3.78782 3.85013 3.91058 4.00674 4.07074 4.12441 4.17457 4.20996 4.23917 4.37086 4.38736 4.40235 4.51517 4.52056 4.65749 4.70074 4.81383 4.81577 4.85024 4.90651 4.95854 4.96087 5.01876 5.07993 5.11923 5.18620 5.22140 5.30003 5.33276 5.45781 5.54226 5.55086 5.61745 5.67346 5.76639 6.21430 6.32667 6.36708 7.05625 7.10142 7.80750 8.49926 9.28852 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.002686 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.179336 B =10423.305225 C =12051.947002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 O -0.324 6.324 4 C 0.146 3.854 5 C -0.213 4.213 6 C -0.038 4.038 7 C -0.184 4.184 8 C 0.561 3.439 9 O -0.581 6.581 10 N -0.600 5.600 11 C 0.107 3.893 12 C -0.123 4.123 13 C 0.158 3.842 14 H 0.026 0.974 15 C -0.109 4.109 16 H 0.060 0.940 17 C -0.121 4.121 18 C 0.181 3.819 19 N -0.616 5.616 20 C -0.228 4.228 21 H 0.088 0.912 22 C -0.070 4.070 23 N -0.953 5.953 24 Si 0.971 3.029 25 H -0.288 1.288 26 H -0.299 1.299 27 H -0.266 1.266 28 C 0.134 3.866 29 C -0.046 4.046 30 C -0.160 4.160 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.154 0.846 37 H 0.129 0.871 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.006 0.994 45 H 0.014 0.986 46 H 0.245 0.755 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.157 0.843 50 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.089 -6.402 16.506 26.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.237 6.237 4 C 0.100 3.900 5 C -0.231 4.231 6 C -0.057 4.057 7 C -0.187 4.187 8 C 0.351 3.649 9 O -0.463 6.463 10 N -0.331 5.331 11 C -0.015 4.015 12 C -0.162 4.162 13 C 0.051 3.949 14 H 0.043 0.957 15 C -0.129 4.129 16 H 0.079 0.921 17 C -0.160 4.160 18 C 0.056 3.944 19 N -0.340 5.340 20 C -0.357 4.357 21 H 0.106 0.894 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.800 3.200 25 H -0.215 1.215 26 H -0.226 1.226 27 H -0.190 1.190 28 C 0.012 3.988 29 C -0.065 4.065 30 C -0.178 4.178 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.172 0.828 37 H 0.147 0.853 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.024 0.976 45 H 0.033 0.967 46 H 0.054 0.946 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.175 0.825 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -19.845 -6.542 16.664 26.727 hybrid contribution 0.525 -0.123 -1.503 1.596 sum -19.320 -6.665 15.162 25.448 Atomic orbital electron populations 1.21811 0.91448 1.04172 1.03294 1.23135 0.96981 0.80593 1.02570 1.86044 1.18444 1.31538 1.87700 1.19408 0.82797 0.94441 0.93359 1.21350 0.93101 0.99480 1.09191 1.21009 0.95104 0.95862 0.93680 1.19732 0.91889 0.95610 1.11516 1.18660 0.88345 0.78387 0.79519 1.90735 1.64766 1.48901 1.41882 1.48275 1.07303 1.37760 1.39751 1.22202 0.94939 0.95583 0.88785 1.21748 0.96278 1.01691 0.96510 1.20868 0.92620 0.94858 0.86518 0.95680 1.22448 0.96476 0.98653 0.95369 0.92120 1.22585 0.95647 1.01272 0.96485 1.21302 0.85221 0.95915 0.91918 1.44489 1.07264 1.77253 1.05002 1.19394 0.96744 1.34883 0.84710 0.89419 1.25628 0.96374 1.03057 1.01222 1.70175 1.05994 1.57142 1.26924 0.85158 0.78131 0.76964 0.79720 1.21541 1.22584 1.19021 1.21525 0.78900 1.03261 0.95074 1.21368 0.92201 0.98730 0.94162 1.20613 0.94894 0.95674 1.06610 0.91852 0.88333 0.91663 0.90988 0.90756 0.82819 0.85341 0.87082 0.88960 0.90377 0.93196 0.90125 0.90494 0.97614 0.96721 0.94622 0.89415 0.89482 0.82528 0.82590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 71.98 0.74 -0.37 16 2 C 0.04 0.43 5.45 71.98 0.39 0.83 16 3 O -0.32 -5.36 10.12 -90.36 -0.91 -6.28 16 4 C 0.15 2.64 6.70 22.63 0.15 2.79 16 5 C -0.21 -3.77 9.01 22.33 0.20 -3.57 16 6 C -0.04 -0.83 9.68 22.50 0.22 -0.61 16 7 C -0.18 -4.39 5.10 -20.08 -0.10 -4.50 16 8 C 0.56 16.46 7.26 86.72 0.63 17.09 16 9 O -0.58 -20.97 16.37 -3.97 -0.06 -21.04 16 10 N -0.60 -16.52 3.01 -822.51 -2.47 -18.99 16 11 C 0.11 2.54 4.88 86.54 0.42 2.97 16 12 C -0.12 -3.96 5.48 30.29 0.17 -3.79 16 13 C 0.16 6.11 2.57 45.51 0.12 6.22 16 14 H 0.03 0.98 7.92 -2.38 -0.02 0.96 16 15 C -0.11 -3.81 2.85 -9.98 -0.03 -3.83 16 16 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 17 C -0.12 -4.44 6.54 31.63 0.21 -4.24 16 18 C 0.18 9.00 5.45 86.85 0.47 9.47 16 19 N -0.62 -30.90 3.35 -669.89 -2.24 -33.14 16 20 C -0.23 -12.45 9.85 84.03 0.83 -11.62 16 21 H 0.09 4.49 7.28 -2.91 -0.02 4.47 16 22 C -0.07 -3.98 5.48 84.86 0.46 -3.52 16 23 N -0.95 -57.80 10.49 21.65 0.23 -57.58 16 24 Si 0.97 45.56 29.56 68.60 2.03 47.59 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 C 0.13 3.91 5.95 85.89 0.51 4.42 16 29 C -0.05 -0.86 7.29 22.50 0.16 -0.69 16 30 C -0.16 -2.71 9.97 22.33 0.22 -2.49 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.07 0.65 7.67 -2.39 -0.02 0.63 16 35 H 0.07 0.62 7.64 -2.39 -0.02 0.60 16 36 H 0.15 1.94 6.28 -2.91 -0.02 1.92 16 37 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 38 H 0.11 2.25 4.41 -2.39 -0.01 2.24 16 39 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 40 H 0.08 2.49 7.64 -2.39 -0.02 2.48 16 41 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 42 H 0.08 2.62 8.11 -2.39 -0.02 2.60 16 43 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 44 H 0.01 0.31 7.79 -2.39 -0.02 0.29 16 45 H 0.01 0.82 7.22 -2.38 -0.02 0.80 16 46 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 47 H 0.09 2.28 8.08 -2.39 -0.02 2.26 16 48 H 0.09 2.64 7.02 -2.39 -0.02 2.62 16 49 H 0.16 2.27 6.54 -2.91 -0.02 2.25 16 50 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -72.88 388.95 3.27 -69.61 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.93 Total: 15.27 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 5.78 Total: 4.56 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.49 Total: -109.71 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.98 Total: -27.32 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -72.88 3.27 -69.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036883101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.830 kcal (2) G-P(sol) polarization free energy of solvation -72.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds