Wall clock time and date at job start Wed Apr 1 2020 02:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.46865 * 2 1 4 4 C 1.35711 * 116.99759 * 180.02562 * 3 2 1 5 5 C 1.38994 * 119.91372 * 180.02562 * 4 3 2 6 6 C 1.37705 * 120.09271 * 180.02562 * 5 4 3 7 7 C 1.39739 * 119.90721 * 359.97438 * 6 5 4 8 8 C 1.47603 * 120.08627 * 180.02562 * 7 6 5 9 9 O 1.21582 * 119.99836 * 349.06428 * 8 7 6 10 10 N 1.34772 * 120.00114 * 169.06435 * 8 7 6 11 11 C 1.48250 * 127.00396 * 173.41216 * 10 8 7 12 12 C 1.55264 * 103.44634 * 141.56318 * 11 10 8 13 13 C 1.53222 * 102.46366 * 36.19352 * 12 11 10 14 14 C 1.53944 * 111.56276 * 101.21832 * 13 12 11 15 15 C 1.54593 * 102.67547 * 153.88364 * 14 13 12 16 16 N 1.47133 * 107.44620 * 339.26301 * 15 14 13 17 17 C 1.36944 * 125.60357 * 179.02740 * 16 15 14 18 18 H 1.07999 * 119.99664 * 179.97438 * 17 16 15 19 19 C 1.38811 * 120.00064 * 359.97438 * 17 16 15 20 20 N 1.31622 * 119.99952 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00074 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47212 * 90.00045 * 21 19 17 23 23 H 1.48498 * 109.47195 * 210.00597 * 21 19 17 24 24 H 1.48500 * 109.47255 * 330.00210 * 21 19 17 25 25 C 1.47699 * 108.78772 * 358.99567 * 16 15 14 26 26 C 1.47893 * 127.00367 * 353.43771 * 10 8 7 27 27 C 1.39727 * 119.82409 * 0.27809 * 7 6 5 28 28 C 1.37705 * 119.91229 * 359.42194 * 27 7 6 29 29 H 1.09008 * 109.46812 * 299.99519 * 1 2 3 30 30 H 1.08995 * 109.47760 * 59.99381 * 1 2 3 31 31 H 1.09003 * 109.47022 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46812 * 240.00481 * 2 1 3 33 33 H 1.09001 * 109.47341 * 120.00615 * 2 1 3 34 34 H 1.08004 * 119.95720 * 0.02562 * 5 4 3 35 35 H 1.07995 * 120.04914 * 180.02562 * 6 5 4 36 36 H 1.09006 * 110.62210 * 260.04792 * 11 10 8 37 37 H 1.08999 * 110.62798 * 23.06727 * 11 10 8 38 38 H 1.09001 * 110.80745 * 277.94485 * 12 11 10 39 39 H 1.09000 * 110.80913 * 154.44036 * 12 11 10 40 40 H 1.08998 * 110.73378 * 35.63125 * 14 13 12 41 41 H 1.09000 * 110.87409 * 272.19902 * 14 13 12 42 42 H 1.08991 * 109.87272 * 219.75690 * 15 14 13 43 43 H 1.09003 * 109.87161 * 98.76857 * 15 14 13 44 44 H 0.96993 * 119.99669 * 180.02562 * 20 19 17 45 45 H 1.09007 * 110.39133 * 141.41654 * 25 16 15 46 46 H 1.08997 * 110.39253 * 263.80037 * 25 16 15 47 47 H 1.08994 * 110.04514 * 85.87168 * 26 10 8 48 48 H 1.08997 * 110.04574 * 324.40332 * 26 10 8 49 49 H 1.08006 * 120.04101 * 179.71953 * 27 7 6 50 50 H 1.07999 * 119.95607 * 180.31545 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5251 -0.0005 5 6 3.8810 2.8103 0.0000 6 6 5.2456 2.9950 -0.0011 7 6 6.0985 1.8881 -0.0022 8 6 7.5618 2.0815 -0.0028 9 8 8.0289 3.1862 -0.2021 10 7 8.3801 1.0336 0.2176 11 6 9.8593 1.0203 0.1186 12 6 10.2922 0.1129 1.3018 13 6 9.1846 -0.9455 1.3293 14 6 9.6416 -2.2600 0.6711 15 6 8.7526 -3.3153 1.3680 16 7 8.2745 -2.7262 2.6287 17 6 7.4429 -3.3369 3.5291 18 1 7.1482 -2.8186 4.4296 19 6 6.9787 -4.6220 3.2845 20 7 7.3383 -5.2538 2.1872 21 14 5.8449 -5.4553 4.5131 22 1 4.4329 -5.1476 4.1713 23 1 6.0570 -6.9242 4.4652 24 1 6.1434 -4.9564 5.8795 25 6 8.8396 -1.3683 2.7636 26 6 7.9855 -0.3375 0.6071 27 6 5.5624 0.5978 -0.0080 28 6 4.1967 0.4215 -0.0007 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.2211 3.6654 0.0012 35 1 5.6561 3.9939 -0.0003 36 1 10.1766 0.5900 -0.8314 37 1 10.2613 2.0263 0.2390 38 1 10.3127 0.6764 2.2346 39 1 11.2611 -0.3455 1.1038 40 1 10.6958 -2.4476 0.8752 41 1 9.4519 -2.2434 -0.4022 42 1 9.3360 -4.2122 1.5759 43 1 7.9045 -3.5647 0.7304 44 1 7.0136 -6.1516 2.0161 45 1 8.1012 -0.6905 3.1921 46 1 9.7385 -1.3905 3.3796 47 1 7.7470 -0.9238 -0.2802 48 1 7.1249 -0.3030 1.2752 49 1 6.2184 -0.2602 -0.0134 50 1 3.7816 -0.5755 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041812161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:38 Heat of formation + Delta-G solvation = 0.316915 kcal Electronic energy + Delta-G solvation = -30908.074368 eV Core-core repulsion = 26901.978720 eV Total energy + Delta-G solvation = -4006.095648 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.74352 -39.91782 -38.52792 -37.11420 -35.65054 -32.83672 -32.27292 -31.31162 -30.76071 -29.69567 -28.92557 -28.26089 -25.94874 -24.64389 -24.16476 -22.93943 -22.41270 -21.56058 -20.28891 -19.74533 -19.04427 -18.20117 -17.29612 -16.92135 -16.31111 -16.14622 -15.63802 -15.33527 -14.84634 -14.66567 -14.31976 -14.17718 -13.83217 -13.72757 -13.53624 -13.43287 -13.36772 -12.99740 -12.90362 -12.66600 -12.20394 -12.07631 -11.92447 -11.89462 -11.86529 -11.55886 -11.34076 -11.29779 -10.94424 -10.90873 -10.88909 -10.62500 -10.25125 -10.11471 -10.04969 -9.83978 -9.70303 -9.62852 -9.12392 -8.66975 -8.60229 -8.28725 -6.88728 -5.76757 -3.10096 0.90455 1.28261 2.89785 2.96698 3.05637 3.34678 3.41179 3.42483 3.83781 4.44044 4.50673 4.59518 4.70630 4.72168 4.78161 4.88022 4.94410 4.97852 5.03931 5.15945 5.25931 5.31479 5.37402 5.42630 5.46353 5.54617 5.58293 5.65522 5.72119 5.76867 5.78279 5.86919 5.92177 5.97369 5.99896 6.06372 6.14094 6.23350 6.25261 6.29499 6.40641 6.46371 6.48629 6.59243 6.68414 6.76702 7.21977 7.50592 7.55242 7.63085 7.77096 8.19733 8.25271 9.16880 9.76641 10.42490 11.34735 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007110 B = 0.004467 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3937.225713 B = 6266.347542 C = 9635.481539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.315 6.315 4 C 0.155 3.845 5 C -0.167 4.167 6 C -0.022 4.022 7 C -0.174 4.174 8 C 0.583 3.417 9 O -0.552 6.552 10 N -0.618 5.618 11 C 0.107 3.893 12 C -0.119 4.119 13 C -0.086 4.086 14 C -0.132 4.132 15 C 0.177 3.823 16 N -0.605 5.605 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.922 5.922 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.149 3.851 26 C 0.113 3.887 27 C -0.060 4.060 28 C -0.214 4.214 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.046 0.954 44 H 0.252 0.748 45 H 0.039 0.961 46 H 0.024 0.976 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.157 0.843 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 11.168 -6.983 14.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.228 6.228 4 C 0.108 3.892 5 C -0.185 4.185 6 C -0.040 4.040 7 C -0.177 4.177 8 C 0.374 3.626 9 O -0.431 6.431 10 N -0.351 5.351 11 C -0.016 4.016 12 C -0.157 4.157 13 C -0.088 4.088 14 C -0.171 4.171 15 C 0.052 3.948 16 N -0.332 5.332 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.023 3.977 26 C -0.008 4.008 27 C -0.078 4.078 28 C -0.233 4.233 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.092 0.908 48 H 0.109 0.891 49 H 0.174 0.826 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.008 11.738 -7.077 14.593 hybrid contribution -0.582 -1.003 0.674 1.341 sum -5.589 10.735 -6.403 13.692 Atomic orbital electron populations 1.21775 0.92626 1.03039 1.03379 1.22890 0.95950 0.81560 1.02136 1.86012 1.19030 1.29897 1.87874 1.19301 0.82326 0.94221 0.93323 1.20337 0.94909 0.94826 1.08449 1.21008 0.91494 0.98828 0.92716 1.19740 0.92781 0.94195 1.11000 1.17788 0.85768 0.82840 0.76202 1.90737 1.77343 1.23657 1.51399 1.48861 1.07611 1.10639 1.67954 1.22531 0.79484 1.00887 0.98656 1.22580 0.98439 0.96476 0.98252 1.21697 0.93860 0.95041 0.98205 1.22919 1.00292 0.94888 0.98987 1.21224 0.94974 0.92121 0.86462 1.44580 1.55328 1.11511 1.21769 1.19047 1.19947 0.96889 0.99643 0.90528 1.24761 1.00699 0.97021 0.97786 1.69957 1.48260 1.13205 1.25524 0.86166 0.80517 0.78842 0.80537 1.21680 1.21674 1.20709 1.21418 0.96278 0.88182 0.91807 1.22430 0.98425 0.80955 0.99025 1.22227 0.95475 0.97687 0.92438 1.21293 0.94137 0.98469 1.09411 0.91508 0.91610 0.90179 0.91649 0.91355 0.84708 0.84214 0.91034 0.90002 0.90752 0.89836 0.91875 0.91959 0.93910 0.93592 0.93785 0.94295 0.95871 0.90794 0.89127 0.82639 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.05 0.48 5.45 37.16 0.20 0.68 16 3 O -0.31 -3.79 10.12 -18.84 -0.19 -3.98 16 4 C 0.15 1.99 6.70 -39.02 -0.26 1.73 16 5 C -0.17 -2.05 9.97 -39.50 -0.39 -2.44 16 6 C -0.02 -0.29 9.58 -39.22 -0.38 -0.66 16 7 C -0.17 -2.58 5.85 -104.96 -0.61 -3.19 16 8 C 0.58 9.49 7.80 -12.44 -0.10 9.39 16 9 O -0.55 -10.23 16.59 5.29 0.09 -10.14 16 10 N -0.62 -9.21 3.31 -171.16 -0.57 -9.78 16 11 C 0.11 1.38 7.13 -1.88 -0.01 1.37 16 12 C -0.12 -1.53 6.20 -25.42 -0.16 -1.69 16 13 C -0.09 -1.35 0.74 -153.86 -0.11 -1.47 16 14 C -0.13 -2.20 5.86 -25.40 -0.15 -2.34 16 15 C 0.18 3.95 5.33 -2.86 -0.02 3.93 16 16 N -0.61 -14.38 3.41 -170.49 -0.58 -14.96 16 17 C -0.23 -6.02 10.28 -15.06 -0.15 -6.17 16 18 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 20 N -0.92 -25.81 10.30 55.49 0.57 -25.23 16 21 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.15 2.88 6.03 -3.14 -0.02 2.86 16 26 C 0.11 1.72 4.26 -3.47 -0.01 1.71 16 27 C -0.06 -0.85 8.31 -39.22 -0.33 -1.18 16 28 C -0.21 -2.83 9.01 -39.49 -0.36 -3.19 16 29 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.58 7.65 -51.92 -0.40 0.18 16 33 H 0.07 0.66 7.65 -51.93 -0.40 0.27 16 34 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.14 1.74 7.68 -52.49 -0.40 1.34 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.07 7.82 -51.93 -0.41 0.66 16 38 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 39 H 0.08 0.95 7.59 -51.93 -0.39 0.55 16 40 H 0.06 0.98 7.74 -51.93 -0.40 0.58 16 41 H 0.06 0.93 7.69 -51.93 -0.40 0.53 16 42 H 0.04 1.08 7.49 -51.93 -0.39 0.69 16 43 H 0.05 1.13 7.38 -51.93 -0.38 0.75 16 44 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.04 0.76 7.76 -51.93 -0.40 0.36 16 46 H 0.02 0.45 8.04 -51.93 -0.42 0.04 16 47 H 0.07 1.09 6.64 -51.93 -0.34 0.74 16 48 H 0.09 1.50 5.52 -51.93 -0.29 1.21 16 49 H 0.16 2.21 3.57 -52.48 -0.19 2.03 16 50 H 0.14 1.62 6.28 -52.49 -0.33 1.29 16 LS Contribution 390.09 15.07 5.88 5.88 Total: -1.00 -31.10 390.09 -10.01 -41.11 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.61 Total: 2.47 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -2.57 Total: -1.69 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.58 Total: -49.97 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.10 Total: -14.12 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.10 -10.01 -41.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041812161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.430 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds