Wall clock time and date at job start Wed Apr 1 2020 02:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.46865 * 2 1 4 4 C 1.35711 * 116.99759 * 180.02562 * 3 2 1 5 5 C 1.38994 * 119.91372 * 180.02562 * 4 3 2 6 6 C 1.37705 * 120.09271 * 180.02562 * 5 4 3 7 7 C 1.39739 * 119.90721 * 359.97438 * 6 5 4 8 8 C 1.47603 * 120.08627 * 180.02562 * 7 6 5 9 9 O 1.21582 * 119.99836 * 349.06428 * 8 7 6 10 10 N 1.34772 * 120.00114 * 169.06435 * 8 7 6 11 11 C 1.48250 * 127.00396 * 173.41216 * 10 8 7 12 12 C 1.55264 * 103.44634 * 141.56318 * 11 10 8 13 13 C 1.53222 * 102.46366 * 36.19352 * 12 11 10 14 14 C 1.53944 * 111.56276 * 101.21832 * 13 12 11 15 15 C 1.54593 * 102.67547 * 153.88364 * 14 13 12 16 16 N 1.47133 * 107.44620 * 339.26301 * 15 14 13 17 17 C 1.36944 * 125.60357 * 179.02740 * 16 15 14 18 18 H 1.07999 * 119.99664 * 179.97438 * 17 16 15 19 19 C 1.38811 * 120.00064 * 359.97438 * 17 16 15 20 20 N 1.31622 * 119.99952 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00074 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47212 * 90.00045 * 21 19 17 23 23 H 1.48498 * 109.47195 * 210.00597 * 21 19 17 24 24 H 1.48500 * 109.47255 * 330.00210 * 21 19 17 25 25 C 1.47699 * 108.78772 * 358.99567 * 16 15 14 26 26 C 1.47893 * 127.00367 * 353.43771 * 10 8 7 27 27 C 1.39727 * 119.82409 * 0.27809 * 7 6 5 28 28 C 1.37705 * 119.91229 * 359.42194 * 27 7 6 29 29 H 1.09008 * 109.46812 * 299.99519 * 1 2 3 30 30 H 1.08995 * 109.47760 * 59.99381 * 1 2 3 31 31 H 1.09003 * 109.47022 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46812 * 240.00481 * 2 1 3 33 33 H 1.09001 * 109.47341 * 120.00615 * 2 1 3 34 34 H 1.08004 * 119.95720 * 0.02562 * 5 4 3 35 35 H 1.07995 * 120.04914 * 180.02562 * 6 5 4 36 36 H 1.09006 * 110.62210 * 260.04792 * 11 10 8 37 37 H 1.08999 * 110.62798 * 23.06727 * 11 10 8 38 38 H 1.09001 * 110.80745 * 277.94485 * 12 11 10 39 39 H 1.09000 * 110.80913 * 154.44036 * 12 11 10 40 40 H 1.08998 * 110.73378 * 35.63125 * 14 13 12 41 41 H 1.09000 * 110.87409 * 272.19902 * 14 13 12 42 42 H 1.08991 * 109.87272 * 219.75690 * 15 14 13 43 43 H 1.09003 * 109.87161 * 98.76857 * 15 14 13 44 44 H 0.96993 * 119.99669 * 180.02562 * 20 19 17 45 45 H 1.09007 * 110.39133 * 141.41654 * 25 16 15 46 46 H 1.08997 * 110.39253 * 263.80037 * 25 16 15 47 47 H 1.08994 * 110.04514 * 85.87168 * 26 10 8 48 48 H 1.08997 * 110.04574 * 324.40332 * 26 10 8 49 49 H 1.08006 * 120.04101 * 179.71953 * 27 7 6 50 50 H 1.07999 * 119.95607 * 180.31545 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5251 -0.0005 5 6 3.8810 2.8103 0.0000 6 6 5.2456 2.9950 -0.0011 7 6 6.0985 1.8881 -0.0022 8 6 7.5618 2.0815 -0.0028 9 8 8.0289 3.1862 -0.2021 10 7 8.3801 1.0336 0.2176 11 6 9.8593 1.0203 0.1186 12 6 10.2922 0.1129 1.3018 13 6 9.1846 -0.9455 1.3293 14 6 9.6416 -2.2600 0.6711 15 6 8.7526 -3.3153 1.3680 16 7 8.2745 -2.7262 2.6287 17 6 7.4429 -3.3369 3.5291 18 1 7.1482 -2.8186 4.4296 19 6 6.9787 -4.6220 3.2845 20 7 7.3383 -5.2538 2.1872 21 14 5.8449 -5.4553 4.5131 22 1 4.4329 -5.1476 4.1713 23 1 6.0570 -6.9242 4.4652 24 1 6.1434 -4.9564 5.8795 25 6 8.8396 -1.3683 2.7636 26 6 7.9855 -0.3375 0.6071 27 6 5.5624 0.5978 -0.0080 28 6 4.1967 0.4215 -0.0007 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.2211 3.6654 0.0012 35 1 5.6561 3.9939 -0.0003 36 1 10.1766 0.5900 -0.8314 37 1 10.2613 2.0263 0.2390 38 1 10.3127 0.6764 2.2346 39 1 11.2611 -0.3455 1.1038 40 1 10.6958 -2.4476 0.8752 41 1 9.4519 -2.2434 -0.4022 42 1 9.3360 -4.2122 1.5759 43 1 7.9045 -3.5647 0.7304 44 1 7.0136 -6.1516 2.0161 45 1 8.1012 -0.6905 3.1921 46 1 9.7385 -1.3905 3.3796 47 1 7.7470 -0.9238 -0.2802 48 1 7.1249 -0.3030 1.2752 49 1 6.2184 -0.2602 -0.0134 50 1 3.7816 -0.5755 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041812161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:37 Heat of formation + Delta-G solvation = -16.597125 kcal Electronic energy + Delta-G solvation = -30908.807816 eV Core-core repulsion = 26901.978720 eV Total energy + Delta-G solvation = -4006.829096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.89894 -40.99266 -39.82388 -38.17743 -37.16690 -34.48195 -33.29094 -32.36975 -31.96147 -31.10871 -30.26085 -29.58413 -27.50240 -26.11119 -25.16421 -24.19391 -23.45317 -22.54567 -22.06294 -20.88753 -20.34586 -19.21635 -18.75523 -18.42547 -17.29931 -17.15518 -16.86005 -16.68477 -16.43508 -16.06663 -15.57149 -15.42994 -15.32004 -14.97025 -14.64161 -14.47247 -14.35374 -14.27515 -14.03790 -13.78189 -13.53527 -13.27113 -13.19176 -13.00779 -12.93001 -12.87713 -12.74346 -12.69587 -12.55582 -12.38939 -12.02131 -11.85466 -11.80094 -11.72459 -11.47037 -11.35532 -11.20411 -10.98373 -10.65600 -10.16549 -9.81445 -9.32177 -8.84193 -7.81584 -5.15673 -0.18226 0.25089 1.46791 1.47952 1.56241 1.72919 1.88822 2.10676 2.51112 2.74767 3.32437 3.36576 3.48151 3.60660 3.67903 3.77258 3.78656 3.90457 4.00921 4.08053 4.16513 4.26874 4.27881 4.29863 4.34724 4.42402 4.47400 4.54409 4.69090 4.70955 4.79599 4.82908 4.84597 4.90822 4.91408 4.95323 5.03614 5.06686 5.09587 5.13787 5.16249 5.24923 5.28424 5.33816 5.41710 5.49952 5.58432 5.74624 5.84380 6.24005 6.27407 6.41426 7.03161 7.15366 7.81732 8.45783 9.28132 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007110 B = 0.004467 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3937.225713 B = 6266.347542 C = 9635.481539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.040 3.960 3 O -0.320 6.320 4 C 0.153 3.847 5 C -0.164 4.164 6 C -0.023 4.023 7 C -0.192 4.192 8 C 0.579 3.421 9 O -0.579 6.579 10 N -0.616 5.616 11 C 0.105 3.895 12 C -0.108 4.108 13 C -0.076 4.076 14 C -0.115 4.115 15 C 0.184 3.816 16 N -0.624 5.624 17 C -0.238 4.238 18 H 0.076 0.924 19 C -0.058 4.058 20 N -0.947 5.947 21 Si 0.968 3.032 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.274 1.274 25 C 0.147 3.853 26 C 0.121 3.879 27 C -0.065 4.065 28 C -0.222 4.222 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.004 0.996 43 H 0.015 0.985 44 H 0.246 0.754 45 H 0.033 0.967 46 H 0.029 0.971 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.152 0.848 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 12.139 -7.286 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 O -0.233 6.233 4 C 0.107 3.893 5 C -0.182 4.182 6 C -0.042 4.042 7 C -0.195 4.195 8 C 0.372 3.628 9 O -0.462 6.462 10 N -0.348 5.348 11 C -0.016 4.016 12 C -0.146 4.146 13 C -0.077 4.077 14 C -0.153 4.153 15 C 0.059 3.941 16 N -0.350 5.350 17 C -0.367 4.367 18 H 0.094 0.906 19 C -0.252 4.252 20 N -0.596 5.596 21 Si 0.797 3.203 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.199 1.199 25 C 0.022 3.978 26 C -0.001 4.001 27 C -0.083 4.083 28 C -0.240 4.240 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.176 0.824 35 H 0.165 0.835 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.023 0.977 43 H 0.033 0.967 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.098 0.902 48 H 0.092 0.908 49 H 0.169 0.831 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.090 12.724 -7.370 15.560 hybrid contribution -0.607 -1.310 0.807 1.654 sum -5.697 11.414 -6.563 14.346 Atomic orbital electron populations 1.21798 0.90886 1.04184 1.03554 1.23139 0.97368 0.80558 1.02338 1.86019 1.18363 1.31380 1.87552 1.19443 0.82810 0.94348 0.92725 1.20580 0.94796 0.95448 1.07367 1.21141 0.91852 0.98783 0.92425 1.19788 0.92384 0.94884 1.12466 1.18006 0.86392 0.82639 0.75804 1.90712 1.77898 1.24569 1.52993 1.48896 1.08571 1.10094 1.67283 1.22713 0.78106 1.01217 0.99599 1.22558 0.98338 0.95290 0.98420 1.21566 0.95171 0.95507 0.95500 1.22790 0.99948 0.92901 0.99678 1.20996 0.94239 0.92797 0.86022 1.44834 1.55114 1.13281 1.21773 1.19368 1.20025 0.97191 1.00122 0.90571 1.25477 1.02448 0.97767 0.99484 1.70161 1.49394 1.13035 1.27008 0.85233 0.78843 0.77311 0.78907 1.21215 1.22224 1.19885 1.21562 0.95901 0.86005 0.94365 1.22292 0.97659 0.81261 0.98901 1.22180 0.95863 0.97363 0.92934 1.21418 0.93914 0.99210 1.09492 0.91598 0.91153 0.88550 0.90926 0.91708 0.82449 0.83549 0.89041 0.89844 0.90651 0.87251 0.90000 0.89650 0.97738 0.96681 0.94484 0.94836 0.95340 0.90175 0.90767 0.83136 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.04 0.73 5.45 71.98 0.39 1.12 16 3 O -0.32 -7.30 10.12 -90.32 -0.91 -8.22 16 4 C 0.15 3.81 6.70 22.63 0.15 3.97 16 5 C -0.16 -3.81 9.97 22.32 0.22 -3.59 16 6 C -0.02 -0.60 9.58 22.51 0.22 -0.38 16 7 C -0.19 -5.63 5.85 -20.08 -0.12 -5.75 16 8 C 0.58 18.50 7.80 86.72 0.68 19.18 16 9 O -0.58 -21.14 16.59 -3.97 -0.07 -21.20 16 10 N -0.62 -17.54 3.31 -813.71 -2.70 -20.23 16 11 C 0.10 2.43 7.13 86.82 0.62 3.05 16 12 C -0.11 -2.44 6.20 31.45 0.19 -2.25 16 13 C -0.08 -2.24 0.74 -51.76 -0.04 -2.28 16 14 C -0.11 -3.59 5.86 31.46 0.18 -3.41 16 15 C 0.18 8.35 5.33 86.80 0.46 8.81 16 16 N -0.62 -29.95 3.41 -693.31 -2.36 -32.31 16 17 C -0.24 -12.80 10.28 84.03 0.86 -11.93 16 18 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.06 -3.20 5.49 84.86 0.47 -2.73 16 20 N -0.95 -54.49 10.30 21.65 0.22 -54.27 16 21 Si 0.97 44.35 29.55 68.60 2.03 46.38 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 25 C 0.15 5.56 6.03 86.31 0.52 6.08 16 26 C 0.12 3.55 4.26 85.98 0.37 3.92 16 27 C -0.07 -1.85 8.31 22.50 0.19 -1.66 16 28 C -0.22 -5.79 9.01 22.33 0.20 -5.59 16 29 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.20 7.65 -2.38 -0.02 1.18 16 33 H 0.06 1.21 7.65 -2.39 -0.02 1.19 16 34 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.15 3.54 7.68 -2.91 -0.02 3.52 16 36 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.08 1.97 7.82 -2.39 -0.02 1.95 16 38 H 0.07 1.74 7.93 -2.39 -0.02 1.72 16 39 H 0.11 1.99 7.59 -2.39 -0.02 1.97 16 40 H 0.08 2.30 7.74 -2.39 -0.02 2.28 16 41 H 0.08 2.32 7.69 -2.39 -0.02 2.30 16 42 H 0.00 0.23 7.49 -2.39 -0.02 0.21 16 43 H 0.01 0.76 7.38 -2.39 -0.02 0.74 16 44 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 45 H 0.03 1.30 7.76 -2.38 -0.02 1.28 16 46 H 0.03 1.07 8.04 -2.39 -0.02 1.05 16 47 H 0.08 2.28 6.64 -2.39 -0.02 2.26 16 48 H 0.07 2.46 5.52 -2.39 -0.01 2.45 16 49 H 0.15 4.32 3.57 -2.91 -0.01 4.31 16 50 H 0.14 3.39 6.28 -2.91 -0.02 3.38 16 Total: -1.00 -68.22 390.09 3.46 -64.75 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.94 Total: 19.77 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 6.31 Total: 5.33 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -4.83 Total: -106.81 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.98 Total: -29.42 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.22 3.46 -64.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041812161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.156 kcal (2) G-P(sol) polarization free energy of solvation -68.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds